Ss1.1-Pig4-TMW8032F09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGAAAATGGCGTGGGAACAGAATGTCCACAACATTGTCATGGTGACCCAGTGCGTGGAG AAGGGCCGAGTAAAGTGTGACCATTACTGGCCGGCGGACCAGGATTCCCTTTACTACGGG GACCTCATCCTGCAGATGCTCTCGGAGTCTGTGCTGCCAGAGTGGACCATCCGGGAATTT AGGATATGCAGCGAGGAGCAGCTGGATGCGCACAGACTCATCCGCCACTTTCACTACACG GTGTGGCCAGACCACGGCGTCCCGGAGACCACCCAGTCCCTGATCCAGTTTGTGCGCACC GTCAGGGACTACATCAACAGGACCCCGGGGGCTGGGCCCACCGTGGTGCACTGCAGTGCT GGTGTGGGCAGGACTGGAACCTTTATTGCATTGGACCGAATCCTCCAGCAATTAGACTCC AAAGATTCTGTGGACATTTATGGAGCAGTGCATGACCTAAGACTCCACCGGGTTCACATG GTCCAGACCGAGTGTCAGTATGTGTACCTCCATCAGTGTGTAAGAGATGTTCTCAGAGCA AGGAAGCTACGGAGTGAACAGGAAAACCCTTTGTTTCCAATCTACGAAAATGTGAATCCA GAGTATCACAGAGATGCGGGCTATTCAAGGCATTGAGAATGCACCGGAAGATCTCCTGGA TAAAAACTATTCACTTTGTAATTTAAAAACAAAAACAAAAACAAAAACTTGCTTCACGCC CTATAGAGGTGCCAGCTATTTCTGTTGATACTATGTATAATTTATTAATCTGGAGAATTT TTAAGAATTTATGTAATTTAAAGGTAACAGATATTATTGTACATAGTTGTATTTTGTAGT TTCTTTTGTAAATATGTATTTTTTCACAGTGTTTAATATTATAAGCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGAAAATGGCGTGGGAACAGAATGTCCACAACATTGTCATGGTGACCCAGTGCGTGGAG AAGGGCCGAGTAAAGTGTGACCATTACTGGCCGGCGGACCAGGATTCCCTTTACTACGGG GACCTCATCCTGCAGATGCTCTCGGAGTCTGTGCTGCCAGAGTGGACCATCCGGGAATTT AGGATATGCAGCGAGGAGCAGCTGGATGCGCACAGACTCATCCGCCACTTTCACTACACG GTGTGGCCAGACCACGGCGTCCCGGAGACCACCCAGTCCCTGATCCAGTTTGTGCGCACC GTCAGGGACTACATCAACAGGACCCCGGGGGCTGGGCCCACCGTGGTGCACTGCAGTGCT GGTGTGGGCAGGACTGGAACCTTTATTGCATTGGACCGAATCCTCCAGCAATTAGACTCC AAAGATTCTGTGGACATTTATGGAGCAGTGCATGACCTAAGACTCCACCGGGTTCACATG GTCCAGACCGAGTGTCAGTATGTGTACCTCCATCAGTGTGTAAGAGATGTTCTCAGAGCA AGGAAGCTACGGAGTGAACAGGAAAACCCTTTGTTTCCAATCTACGAAAATGTGAATCCA GAGTATCACAGAGATGCGGGCTATTCAAGGCATTGAGAATGCACCGGAAGATCTCCTGGA TAAAAACTATTCACTTTGTAATTTAAAAACAAAAACAAAAACAAAAACTTGCTTCACGCC CTATAGAGGTGCCAGCTATTTCTGTTGATACTATGTATAATTTATTAATCTGGAGAATTT TTAAGAATTTATGTAATTTAAAGGTAACAGATATTATTGTACATAGTTGTATTTTGTAGT TTCTTTTGTAAATATGTATTTTTTCACAGTGTTTAATATTATAAGCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 193-331, - strand, RNAz p=0.952312 | |
| 232-356, - strand, RNAz p=0.970483 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 193-331, - strand, RNAz p=0.952312 | |
| 232-356, - strand, RNAz p=0.970483 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 70-191, gnl|bosTau2|chr5 (28519492-28519371) | |
| 70-191, gnl|canFam2|chr10 (15273601-15273764) | |
| 70-191, gnl|danRer3|chrNA (202095584-202095735) | |
| 70-191, gnl|dasNov1|scaffold_277666 (1467-1302) | |
| 70-191, gnl|echTel1|scaffold_323816 (19769-19942) | |
| 70-191, gnl|fr1|chrUn (298433026-298432898) | |
| 70-191, gnl|galGal2|chr1 (32758891-32759051) | |
| 70-191, gnl|hg17|chr12 (69214870-69215035) | |
| 70-191, gnl|Hg17|chr12 (69215002-69214881) | |
| 70-191, gnl|loxAfr1|scaffold_1298 (117797-117962) | |
| 70-191, gnl|mm7|chr10 (115876712-115876548) | |
| 70-191, gnl|Mm7|chr10 (115876578-115876699) | |
| 70-191, gnl|monDom2|scaffold_36 (1560975-1561147) | |
| 70-191, gnl|panTro1|chr10 (70878999-70879164) | |
| 70-191, gnl|rheMac2|chr11 (67484816-67484981) | |
| 70-191, gnl|rn3|chr7 (55719473-55719309) | |
| 70-191, gnl|tetNig1|chrUn_random (19175068-19175202) | |
| 70-191, gnl|xenTro1|scaffold_405 (305802-305639) | |
| 193-356, gnl|bosTau2|chr5 (28518987-28518824) | |
| 193-356, gnl|canFam2|chr10 (15273249-15273387) | |
| 193-356, gnl|danRer3|chrNA (202094820-202094957) | |
| 193-356, gnl|dasNov1|scaffold_9028 (20907-20771) | |
| 193-356, gnl|echTel1|scaffold_323816 (19418-19567) | |
| 193-356, gnl|fr1|chrUn (298433345-298433199) | |
| 193-356, gnl|galGal2|chr1 (32758515-32758654) | |
| 193-356, gnl|hg17|chr12 (69214520-69214669) | |
| 193-356, gnl|Hg17|chr12 (69214698-69214535) | |
| 193-356, gnl|loxAfr1|scaffold_1298 (117452-117594) | |
| 193-356, gnl|mm7|chr10 (115877360-115877212) | |
| 193-356, gnl|Mm7|chr10 (115877181-115877344) | |
| 193-356, gnl|monDom2|scaffold_36 (1560590-1560726) | |
| 193-356, gnl|oryCun1|scaffold_80883 (4745-4616) | |
| 193-356, gnl|panTro1|chr10 (70878644-70878793) | |
| 193-356, gnl|rheMac2|chr11 (67484460-67484609) | |
| 193-356, gnl|rn3|chr7 (55720018-55719871) | |
| 193-356, gnl|tetNig1|chrUn_random (19174813-19174949) | |
| 193-356, gnl|xenTro1|scaffold_405 (306991-306843) | |
| 612-881, gnl|bosTau2|chr5 (29169650-29169385) | |
| 612-881, gnl|Hg17|chr12 (69201560-69201304) | |
| 612-881, gnl|Mm7|chr10 (115891736-115892017) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 70-191, gnl|bosTau2|chr5 (28519492-28519371) | |
| 70-191, gnl|canFam2|chr10 (15273601-15273764) | |
| 70-191, gnl|danRer3|chrNA (202095584-202095735) | |
| 70-191, gnl|dasNov1|scaffold_277666 (1467-1302) | |
| 70-191, gnl|echTel1|scaffold_323816 (19769-19942) | |
| 70-191, gnl|fr1|chrUn (298433026-298432898) | |
| 70-191, gnl|galGal2|chr1 (32758891-32759051) | |
| 70-191, gnl|hg17|chr12 (69214870-69215035) | |
| 70-191, gnl|Hg17|chr12 (69215002-69214881) | |
| 70-191, gnl|loxAfr1|scaffold_1298 (117797-117962) | |
| 70-191, gnl|mm7|chr10 (115876712-115876548) | |
| 70-191, gnl|Mm7|chr10 (115876578-115876699) | |
| 70-191, gnl|monDom2|scaffold_36 (1560975-1561147) | |
| 70-191, gnl|panTro1|chr10 (70878999-70879164) | |
| 70-191, gnl|rheMac2|chr11 (67484816-67484981) | |
| 70-191, gnl|rn3|chr7 (55719473-55719309) | |
| 70-191, gnl|tetNig1|chrUn_random (19175068-19175202) | |
| 70-191, gnl|xenTro1|scaffold_405 (305802-305639) | |
| 193-356, gnl|bosTau2|chr5 (28518987-28518824) | |
| 193-356, gnl|canFam2|chr10 (15273249-15273387) | |
| 193-356, gnl|danRer3|chrNA (202094820-202094957) | |
| 193-356, gnl|dasNov1|scaffold_9028 (20907-20771) | |
| 193-356, gnl|echTel1|scaffold_323816 (19418-19567) | |
| 193-356, gnl|fr1|chrUn (298433345-298433199) | |
| 193-356, gnl|galGal2|chr1 (32758515-32758654) | |
| 193-356, gnl|hg17|chr12 (69214520-69214669) | |
| 193-356, gnl|Hg17|chr12 (69214698-69214535) | |
| 193-356, gnl|loxAfr1|scaffold_1298 (117452-117594) | |
| 193-356, gnl|mm7|chr10 (115877360-115877212) | |
| 193-356, gnl|Mm7|chr10 (115877181-115877344) | |
| 193-356, gnl|monDom2|scaffold_36 (1560590-1560726) | |
| 193-356, gnl|oryCun1|scaffold_80883 (4745-4616) | |
| 193-356, gnl|panTro1|chr10 (70878644-70878793) | |
| 193-356, gnl|rheMac2|chr11 (67484460-67484609) | |
| 193-356, gnl|rn3|chr7 (55720018-55719871) | |
| 193-356, gnl|tetNig1|chrUn_random (19174813-19174949) | |
| 193-356, gnl|xenTro1|scaffold_405 (306991-306843) | |
| 612-881, gnl|bosTau2|chr5 (29169650-29169385) | |
| 612-881, gnl|Hg17|chr12 (69201560-69201304) | |
| 612-881, gnl|Mm7|chr10 (115891736-115892017) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| pro (0.512033) | |
| gul (0.355177) | |
| fco (0.314416) | |
| sme (0.305437) | |
| isp (0.300752) | |
| sag (0.182715) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| spl (0.143184) | |
| che (0.136314) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ova (0.129132) | |
| sug (0.127291) | |
| eep (0.122564) | |
| jca (0.11396) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| gul (0.355177) | |
| fco (0.314416) | |
| sme (0.305437) | |
| isp (0.300752) | |
| sag (0.182715) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| spl (0.143184) | |
| che (0.136314) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ova (0.129132) | |
| sug (0.127291) | |
| eep (0.122564) | |
| jca (0.11396) |