Non-Coding RNA Search

Ss1.1-Pig4-TMW8032F10.3

Sequence:


               
               TGGGAAGGTCAAAAGACCTTGGACCAGAAGGGGATCCTTGGAAGAGAGCGGGGTCTTGCT
CTCCCTTAGCACTCCCTTCTCCTTCTAGGATCTCTCCTCAGCTAGAGTGAGCAATGCAAT
TCTCCACTCTCCATCTAAACTGCCTGCTAGGCTCACATCACCTGCCCACTATGTTTACTT
TGTTATTCTGGGGTAACATGTATATATGTGCATGTGCCCATGCTGCTATTACCCAGGCAA
GGCTAGAGCGTGTATCATTCCTGTCCTCTCCCTGCGTAAGACTTGACCTGGGGAACCTGT
GCTCTCTTTATTGTTGCTGTCTCTGGAGAGACCCTGGGGAGGGTGTGATGGTGGAGACCC
TCTCCTTTTCCTTGTTAACATTCACTTTGATTGCAGAACCTGAGAGCTGACTGGCTGGCA
CAGAGCCTGCTTGGGGGTAGGGGTAGGGTAAGGTGGTGAGGAGCAGAAAGCTGAACCTGG
GAGGATTCTGAAGCTAAAAGTGGAAAGGGGCTGCTGACTAGAAAGCCCCGGCAAAGGGGA
TGAGTCGGCTGGAGATTCAGAGCACTCGCCTAGCCCTTCCTCCATACGGGAGCCCAGACA
AATCTCTGAACTTGTCTAATTTGCAAAAAAGTTCTTTCATTGCTGTTACTCAAGCCCCAA
ATTCCCATGACTGGAGGACAGGGCTTGTTAACCCAAAAAACCAACCTGCCTCTCCGCAAG
GAATAAAGACGAAGGCTCCTGGAGCCATTTTAACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGAAGGTCAAAAGACCTTGGACCAGAAGGGGATCCTTGGAAGAGAGCGGGGTCTTGCT
CTCCCTTAGCACTCCCTTCTCCTTCTAGGATCTCTCCTCAGCTAGAGTGAGCAATGCAAT
TCTCCACTCTCCATCTAAACTGCCTGCTAGGCTCACATCACCTGCCCACTATGTTTACTT
TGTTATTCTGGGGTAACATGTATATATGTGCATGTGCCCATGCTGCTATTACCCAGGCAA
GGCTAGAGCGTGTATCATTCCTGTCCTCTCCCTGCGTAAGACTTGACCTGGGGAACCTGT
GCTCTCTTTATTGTTGCTGTCTCTGGAGAGACCCTGGGGAGGGTGTGATGGTGGAGACCC
TCTCCTTTTCCTTGTTAACATTCACTTTGATTGCAGAACCTGAGAGCTGACTGGCTGGCA
CAGAGCCTGCTTGGGGGTAGGGGTAGGGTAAGGTGGTGAGGAGCAGAAAGCTGAACCTGG
GAGGATTCTGAAGCTAAAAGTGGAAAGGGGCTGCTGACTAGAAAGCCCCGGCAAAGGGGA
TGAGTCGGCTGGAGATTCAGAGCACTCGCCTAGCCCTTCCTCCATACGGGAGCCCAGACA
AATCTCTGAACTTGTCTAATTTGCAAAAAAGTTCTTTCATTGCTGTTACTCAAGCCCCAA
ATTCCCATGACTGGAGGACAGGGCTTGTTAACCCAAAAAACCAACCTGCCTCTCCGCAAG
GAATAAAGACGAAGGCTCCTGGAGCCATTTTAACTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               572-754, - strand, RNAz p=0.99794

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               572-754, - strand, RNAz p=0.99794

Similar Transcript(s): 1 entry(ies)

More info

Similar Transcript(s): 1 entry(ies)

Help | Less info


               
               572-753, DB806324 full-length enriched swine cDNA library, adult alveolar 
(dbj|DB806324.1|), blast E-value=0, identity=95.63%

Similar Transcript(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               572-753, DB806324 full-length enriched swine cDNA library, adult alveolar 
(dbj|DB806324.1|), blast E-value=0, identity=95.63%

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-436, gnl|bosTau2|chr5 (34344831-34344412)
               

               
               1-436, gnl|Hg17|chr12 (56448830-56448394)
               

               
               1-436, gnl|Mm7|chr10 (126543264-126543775)
               


               
               572-754, gnl|bosTau2|chr5 (34344047-34343866)
               

               
               572-754, gnl|Hg17|chr12 (56447831-56447668)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-436, gnl|bosTau2|chr5 (34344831-34344412)
               

               
               1-436, gnl|Hg17|chr12 (56448830-56448394)
               

               
               1-436, gnl|Mm7|chr10 (126543264-126543775)
               


               
               572-754, gnl|bosTau2|chr5 (34344047-34343866)
               

               
               572-754, gnl|Hg17|chr12 (56447831-56447668)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               cov (0.132153)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               cov (0.132153)

	1-436, gnl\|bosTau2\|chr5 (34344831-34344412)
	1-436, gnl\|Hg17\|chr12 (56448830-56448394)
	1-436, gnl\|Mm7\|chr10 (126543264-126543775)

	572-754, gnl\|bosTau2\|chr5 (34344047-34343866)
	572-754, gnl\|Hg17\|chr12 (56447831-56447668)

	pgl (0.236967)
	mas (0.210305)
	cut (0.169924)
	cag (0.151194)
	cov (0.132153)