Ss1.1-Pig4-TMW8032F11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCACCACCACTCAGAAGTATTGGATTGACATCCAGTTGCGCTGGGGGGACTATGATTC TCATGACATTGAGCGCTACGCCCGGGCCAAGTTCTTAGACTACACCACAGACAATATGAG TATCTACCCTTCACCCACGGGCGTGCTCATTGCCATTGACCTGGCCTATAACCTGCACAG TGCCTATGGAAACTGGTTCCCTGGCAGCAAGCCTCTCATCCAGCAGGCCATGGCCAAAAT CATGAAGGCAAACCCTGCCTTGTATGTGTTACGGGAACGGATCCGTAAGGGGTTGCAGCT CTATTCTTCTGAGCCCACTGAGCCCTATCTCTCCTCTCAGAACTATGGTGAACTCTTCTC CAACCAGATTATCTGGTTTGTGGATGACACTAATGTCTACAGAGTGACTATCCATAAGAC CTTCGAAGGGAACTTGACCACCAAGCCCATCAATGGGGCCATCTTCATCTTCAACCCACG CACGGGGCAGCTCTTCCTCAAGATCATTCACACGTCTGTGTGGGCTGGACAGAAGCGTCT GGGGCAGTTGGCTAAGTGGAAGACGGCTGAGGAAGTGGCCGCCCTGATCCGCTCTTTGCC AGTGGAGGAGCAGCCCAAGCAGATCATTGTCACCAGGAAGGGCATGCTGGATCCACTGGA GGTGCACTTGCTGGACTTCCCCAATATCGTGATCAAAGGCTCAGAGCTCCAGCTCCCCTT CCAGGCTTGTCTCAAGGTGGAAAAGTTTGGGGATCTCATCCTTAAAGCCACTGAACCGCA GATGGTTCTCTTTAACCTCTACGATGACTGGCTCAAGACCATCTCATCTTACACGGCTTT CTCCCGCCTCATCCTGATTCTGCGCGCCCTGCATGTGAATAACGACCGGGCGAAGGTGAT CCTGAAGCCAGACAAGACGACGATCACGGAACCACACCACATCTGGCCCACTCTGACTGA CGAGGAGTGGATCAAGGTGGAGGTGCAGCTCAAGGACCTTATCTTGGCCGACTACGGCAA GAAAAACAATGTGAATGTGGCATCACTGACACAATCAGAAATCCGAGACATCATCCTGGG TATGGAGATCTCAGCACCATCACAGCAGCGGCAACAGATAGCTGAGATTGAGAAGCAGAC CAAGGAACAGTCGCAGCTGACTGCGACCCAGACTCGTACTGTCAACAAGCACGGTGACGA GATCATCACCTCTACCACCAGCAACTATGAGACCCAGACTTTCTCATCCAAGACAGAATG GAGGGTCAGGGCCATCTCTGCTGCCAACCTGCACCTAAGGACCAATCACATCTATGTTTC ATCTGATGATATCAAGGAGACTGGTTATACCTACATCCTTCCCAAGAATGTGCTCAAGAA GTTTATCTGCATATCTGACCTTCGGGCCCAAATTGCAGGGTACCTGTATGGGGTGAGTCC ACCAGATAACCCCCAGGTGAAGGAGATCCGCTGCATCGTGATGGTGCCACAGTGGGGCAC TCACCAGACCGTGCATCTGCCTGGCCAGCTGCCCCAGCACGAGTACCTCAAGGAAATGGA ACCCTTAGGTTGGATTCATACACAGCCCAACGAGTCCCCCCAGCTATCACCCCAGGATGT CACCACCCATGCCAAGATCATGGCTGACAACCCATCTTGGGATGGCGAGAAGACCATCAT CATCACCTGCAGCTTCACACCAGGCTCCTGCACCCTGACAGCCTACAAGCTGACCCCCAG TGGCTATGAGTGGGGCCGCCAGAACACAGACAAGGGCAACAACCCCAAGGGCTACCTACC GTCGCACTACGAGAGGGTCCAGATGCTACTGTCAGACCGCTTCCTTGGCTTCTTTATGGT CCCTGCCCAGTCCTCATGGAACTACAACTTTATGGGTGTCCGGCATGATCCCAACATGAA GTATGAGCTGCAGCTGGCAAACCCCAAAGAGTTCTACCACGAGGTGCACCGACCTTCCCA CTTCCTCAACTTCGCTCTCCTGCAGGAGGGTGAGGTCTACTCTGCGGACCGAGAGGACCT CTATGCCTAGCTGTCCCCTCACCCCCTGCTTCAGACTCCCCTAAGGCTAGAGCCTTTTAC CCCCACAGACAAGCTGGTGACATTCAGCAGCTTGGCCCCTTTTTCCTCTATTTGTGCTTA TTATGTTGTTGATCTCCTGTGACTTGTAATTCTGAACAAAGTATAATAATAAATTTTGTA TAAATAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCACCACCACTCAGAAGTATTGGATTGACATCCAGTTGCGCTGGGGGGACTATGATTC TCATGACATTGAGCGCTACGCCCGGGCCAAGTTCTTAGACTACACCACAGACAATATGAG TATCTACCCTTCACCCACGGGCGTGCTCATTGCCATTGACCTGGCCTATAACCTGCACAG TGCCTATGGAAACTGGTTCCCTGGCAGCAAGCCTCTCATCCAGCAGGCCATGGCCAAAAT CATGAAGGCAAACCCTGCCTTGTATGTGTTACGGGAACGGATCCGTAAGGGGTTGCAGCT CTATTCTTCTGAGCCCACTGAGCCCTATCTCTCCTCTCAGAACTATGGTGAACTCTTCTC CAACCAGATTATCTGGTTTGTGGATGACACTAATGTCTACAGAGTGACTATCCATAAGAC CTTCGAAGGGAACTTGACCACCAAGCCCATCAATGGGGCCATCTTCATCTTCAACCCACG CACGGGGCAGCTCTTCCTCAAGATCATTCACACGTCTGTGTGGGCTGGACAGAAGCGTCT GGGGCAGTTGGCTAAGTGGAAGACGGCTGAGGAAGTGGCCGCCCTGATCCGCTCTTTGCC AGTGGAGGAGCAGCCCAAGCAGATCATTGTCACCAGGAAGGGCATGCTGGATCCACTGGA GGTGCACTTGCTGGACTTCCCCAATATCGTGATCAAAGGCTCAGAGCTCCAGCTCCCCTT CCAGGCTTGTCTCAAGGTGGAAAAGTTTGGGGATCTCATCCTTAAAGCCACTGAACCGCA GATGGTTCTCTTTAACCTCTACGATGACTGGCTCAAGACCATCTCATCTTACACGGCTTT CTCCCGCCTCATCCTGATTCTGCGCGCCCTGCATGTGAATAACGACCGGGCGAAGGTGAT CCTGAAGCCAGACAAGACGACGATCACGGAACCACACCACATCTGGCCCACTCTGACTGA CGAGGAGTGGATCAAGGTGGAGGTGCAGCTCAAGGACCTTATCTTGGCCGACTACGGCAA GAAAAACAATGTGAATGTGGCATCACTGACACAATCAGAAATCCGAGACATCATCCTGGG TATGGAGATCTCAGCACCATCACAGCAGCGGCAACAGATAGCTGAGATTGAGAAGCAGAC CAAGGAACAGTCGCAGCTGACTGCGACCCAGACTCGTACTGTCAACAAGCACGGTGACGA GATCATCACCTCTACCACCAGCAACTATGAGACCCAGACTTTCTCATCCAAGACAGAATG GAGGGTCAGGGCCATCTCTGCTGCCAACCTGCACCTAAGGACCAATCACATCTATGTTTC ATCTGATGATATCAAGGAGACTGGTTATACCTACATCCTTCCCAAGAATGTGCTCAAGAA GTTTATCTGCATATCTGACCTTCGGGCCCAAATTGCAGGGTACCTGTATGGGGTGAGTCC ACCAGATAACCCCCAGGTGAAGGAGATCCGCTGCATCGTGATGGTGCCACAGTGGGGCAC TCACCAGACCGTGCATCTGCCTGGCCAGCTGCCCCAGCACGAGTACCTCAAGGAAATGGA ACCCTTAGGTTGGATTCATACACAGCCCAACGAGTCCCCCCAGCTATCACCCCAGGATGT CACCACCCATGCCAAGATCATGGCTGACAACCCATCTTGGGATGGCGAGAAGACCATCAT CATCACCTGCAGCTTCACACCAGGCTCCTGCACCCTGACAGCCTACAAGCTGACCCCCAG TGGCTATGAGTGGGGCCGCCAGAACACAGACAAGGGCAACAACCCCAAGGGCTACCTACC GTCGCACTACGAGAGGGTCCAGATGCTACTGTCAGACCGCTTCCTTGGCTTCTTTATGGT CCCTGCCCAGTCCTCATGGAACTACAACTTTATGGGTGTCCGGCATGATCCCAACATGAA GTATGAGCTGCAGCTGGCAAACCCCAAAGAGTTCTACCACGAGGTGCACCGACCTTCCCA CTTCCTCAACTTCGCTCTCCTGCAGGAGGGTGAGGTCTACTCTGCGGACCGAGAGGACCT CTATGCCTAGCTGTCCCCTCACCCCCTGCTTCAGACTCCCCTAAGGCTAGAGCCTTTTAC CCCCACAGACAAGCTGGTGACATTCAGCAGCTTGGCCCCTTTTTCCTCTATTTGTGCTTA TTATGTTGTTGATCTCCTGTGACTTGTAATTCTGAACAAAGTATAATAATAAATTTTGTA TAAATAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 290-1224, - strand, RNAz p=0.876199 | |
| 1934-2165, - strand, RNAz p=0.997336 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 290-1224, - strand, RNAz p=0.876199 | |
| 1934-2165, - strand, RNAz p=0.997336 |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 172-418, gnl|bosTau2|chr19 (17296905-17296659) | |
| 172-418, gnl|canFam2|chr9 (49130239-49130499) | |
| 172-418, gnl|danRer3|chr14 (38577528-38577271) | |
| 172-418, gnl|dasNov1|scaffold_10819 (4804-5064) | |
| 172-418, gnl|echTel1|scaffold_318383 (52474-52734) | |
| 172-418, gnl|fr1|chrUn (84990216-84989957) | |
| 172-418, gnl|galGal2|chr19 (5036076-5036336) | |
| 172-418, gnl|hg17|chr17 (1508562-1508822) | |
| 172-418, gnl|Hg17|chr17 (1508816-1508570) | |
| 172-418, gnl|mm7|chr11 (75585092-75584832) | |
| 172-418, gnl|Mm7|chr11 (75584835-75585082) | |
| 172-418, gnl|monDom2|scaffold_86 (2826029-2826284) | |
| 172-418, gnl|oryCun1|scaffold_200944 (44833-45094) | |
| 172-418, gnl|panTro1|chr19_random (5922584-5922324) | |
| 172-418, gnl|rheMac2|chr16 (1460320-1460580) | |
| 172-418, gnl|rn3|chr10 (62839129-62838869) | |
| 172-418, gnl|tetNig1|chr10 (10156020-10156280) | |
| 172-418, gnl|xenTro1|scaffold_416 (810705-810445) | |
| 660-836, gnl|bosTau2|chr19 (17295332-17295156) | |
| 660-836, gnl|canFam2|chr9 (49127892-49128297) | |
| 660-836, gnl|danRer3|chr14 (38578191-38577838) | |
| 660-836, gnl|echTel1|scaffold_318383 (51000-51409) | |
| 660-836, gnl|fr1|chrUn (84990936-84990515) | |
| 660-836, gnl|galGal2|chr19 (5034675-5035134) | |
| 660-836, gnl|hg17|chr17 (1506430-1506832) | |
| 660-836, gnl|Hg17|chr17 (1506611-1506435) | |
| 660-836, gnl|loxAfr1|scaffold_31756 (37869-37467) | |
| 660-836, gnl|mm7|chr11 (75586427-75586029) | |
| 660-836, gnl|Mm7|chr11 (75586240-75586416) | |
| 660-836, gnl|monDom2|scaffold_86 (2825015-2825420) | |
| 660-836, gnl|oryCun1|scaffold_191799 (14432-14825) | |
| 660-836, gnl|panTro1|chr19_random (5924393-5923991) | |
| 660-836, gnl|rheMac2|chr16 (1458063-1458462) | |
| 660-836, gnl|rn3|chr10 (62841043-62840648) | |
| 660-836, gnl|tetNig1|chr10 (10155290-10155713) | |
| 660-836, gnl|xenTro1|scaffold_416 (811659-811208) | |
| 1026-1270, gnl|bosTau2|chr19 (17293917-17293673) | |
| 1026-1270, gnl|canFam2|chr9 (49126212-49126732) | |
| 1026-1270, gnl|danRer3|chr14 (38579111-38578628) | |
| 1026-1270, gnl|dasNov1|scaffold_10819 (1290-1800) | |
| 1026-1270, gnl|echTel1|scaffold_318383 (49490-50012) | |
| 1026-1270, gnl|fr1|chrUn (84991789-84991281) | |
| 1026-1270, gnl|galGal2|chr19 (5033569-5034044) | |
| 1026-1270, gnl|hg17|chr17 (1503573-1504089) | |
| 1026-1270, gnl|Hg17|chr17 (1504064-1503820) | |
| 1026-1270, gnl|loxAfr1|scaffold_213915 (376-897) | |
| 1026-1270, gnl|mm7|chr11 (75588397-75587881) | |
| 1026-1270, gnl|Mm7|chr11 (75587900-75588144) | |
| 1026-1270, gnl|monDom2|scaffold_86 (2823666-2824189) | |
| 1026-1270, gnl|oryCun1|scaffold_191799 (10966-11460) | |
| 1026-1270, gnl|panTro1|chr19_random (5927247-5926731) | |
| 1026-1270, gnl|rheMac2|chr16 (1454809-1455327) | |
| 1026-1270, gnl|rn3|chr10 (62843030-62842510) | |
| 1026-1270, gnl|tetNig1|chr10 (10154360-10154871) | |
| 1026-1270, gnl|xenTro1|scaffold_416 (812840-812288) | |
| 1408-1553, gnl|bosTau2|chr19 (17292446-17292301) | |
| 1408-1553, gnl|canFam2|chr9 (49123965-49124124) | |
| 1408-1553, gnl|danRer3|chr14 (38579604-38579449) | |
| 1408-1553, gnl|dasNov1|scaffold_84083 (658-499) | |
| 1408-1553, gnl|echTel1|scaffold_318383 (48558-48706) | |
| 1408-1553, gnl|fr1|chrUn (84992018-84991861) | |
| 1408-1553, gnl|galGal2|chr19 (5033094-5033250) | |
| 1408-1553, gnl|hg17|chr17 (1501689-1501848) | |
| 1408-1553, gnl|Hg17|chr17 (1501836-1501691) | |
| 1408-1553, gnl|mm7|chr11 (75589993-75589837) | |
| 1408-1553, gnl|Mm7|chr11 (75589844-75589989) | |
| 1408-1553, gnl|monDom2|scaffold_86 (2823421-2823575) | |
| 1408-1553, gnl|oryCun1|scaffold_191799 (7983-8142) | |
| 1408-1553, gnl|rheMac2|chr16 (1452635-1452794) | |
| 1408-1553, gnl|rn3|chr10 (62843529-62843373) | |
| 1408-1553, gnl|tetNig1|chr10 (10154105-10154254) | |
| 1408-1553, gnl|xenTro1|scaffold_416 (813094-812942) | |
| 1895-2228, gnl|bosTau2|chr19 (17291560-17291226) | |
| 1895-2228, gnl|Hg17|chr17 (1501001-1500674) | |
| 1895-2228, gnl|Mm7|chr11 (75590708-75591019) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 172-418, gnl|bosTau2|chr19 (17296905-17296659) | |
| 172-418, gnl|canFam2|chr9 (49130239-49130499) | |
| 172-418, gnl|danRer3|chr14 (38577528-38577271) | |
| 172-418, gnl|dasNov1|scaffold_10819 (4804-5064) | |
| 172-418, gnl|echTel1|scaffold_318383 (52474-52734) | |
| 172-418, gnl|fr1|chrUn (84990216-84989957) | |
| 172-418, gnl|galGal2|chr19 (5036076-5036336) | |
| 172-418, gnl|hg17|chr17 (1508562-1508822) | |
| 172-418, gnl|Hg17|chr17 (1508816-1508570) | |
| 172-418, gnl|mm7|chr11 (75585092-75584832) | |
| 172-418, gnl|Mm7|chr11 (75584835-75585082) | |
| 172-418, gnl|monDom2|scaffold_86 (2826029-2826284) | |
| 172-418, gnl|oryCun1|scaffold_200944 (44833-45094) | |
| 172-418, gnl|panTro1|chr19_random (5922584-5922324) | |
| 172-418, gnl|rheMac2|chr16 (1460320-1460580) | |
| 172-418, gnl|rn3|chr10 (62839129-62838869) | |
| 172-418, gnl|tetNig1|chr10 (10156020-10156280) | |
| 172-418, gnl|xenTro1|scaffold_416 (810705-810445) | |
| 660-836, gnl|bosTau2|chr19 (17295332-17295156) | |
| 660-836, gnl|canFam2|chr9 (49127892-49128297) | |
| 660-836, gnl|danRer3|chr14 (38578191-38577838) | |
| 660-836, gnl|echTel1|scaffold_318383 (51000-51409) | |
| 660-836, gnl|fr1|chrUn (84990936-84990515) | |
| 660-836, gnl|galGal2|chr19 (5034675-5035134) | |
| 660-836, gnl|hg17|chr17 (1506430-1506832) | |
| 660-836, gnl|Hg17|chr17 (1506611-1506435) | |
| 660-836, gnl|loxAfr1|scaffold_31756 (37869-37467) | |
| 660-836, gnl|mm7|chr11 (75586427-75586029) | |
| 660-836, gnl|Mm7|chr11 (75586240-75586416) | |
| 660-836, gnl|monDom2|scaffold_86 (2825015-2825420) | |
| 660-836, gnl|oryCun1|scaffold_191799 (14432-14825) | |
| 660-836, gnl|panTro1|chr19_random (5924393-5923991) | |
| 660-836, gnl|rheMac2|chr16 (1458063-1458462) | |
| 660-836, gnl|rn3|chr10 (62841043-62840648) | |
| 660-836, gnl|tetNig1|chr10 (10155290-10155713) | |
| 660-836, gnl|xenTro1|scaffold_416 (811659-811208) | |
| 1026-1270, gnl|bosTau2|chr19 (17293917-17293673) | |
| 1026-1270, gnl|canFam2|chr9 (49126212-49126732) | |
| 1026-1270, gnl|danRer3|chr14 (38579111-38578628) | |
| 1026-1270, gnl|dasNov1|scaffold_10819 (1290-1800) | |
| 1026-1270, gnl|echTel1|scaffold_318383 (49490-50012) | |
| 1026-1270, gnl|fr1|chrUn (84991789-84991281) | |
| 1026-1270, gnl|galGal2|chr19 (5033569-5034044) | |
| 1026-1270, gnl|hg17|chr17 (1503573-1504089) | |
| 1026-1270, gnl|Hg17|chr17 (1504064-1503820) | |
| 1026-1270, gnl|loxAfr1|scaffold_213915 (376-897) | |
| 1026-1270, gnl|mm7|chr11 (75588397-75587881) | |
| 1026-1270, gnl|Mm7|chr11 (75587900-75588144) | |
| 1026-1270, gnl|monDom2|scaffold_86 (2823666-2824189) | |
| 1026-1270, gnl|oryCun1|scaffold_191799 (10966-11460) | |
| 1026-1270, gnl|panTro1|chr19_random (5927247-5926731) | |
| 1026-1270, gnl|rheMac2|chr16 (1454809-1455327) | |
| 1026-1270, gnl|rn3|chr10 (62843030-62842510) | |
| 1026-1270, gnl|tetNig1|chr10 (10154360-10154871) | |
| 1026-1270, gnl|xenTro1|scaffold_416 (812840-812288) | |
| 1408-1553, gnl|bosTau2|chr19 (17292446-17292301) | |
| 1408-1553, gnl|canFam2|chr9 (49123965-49124124) | |
| 1408-1553, gnl|danRer3|chr14 (38579604-38579449) | |
| 1408-1553, gnl|dasNov1|scaffold_84083 (658-499) | |
| 1408-1553, gnl|echTel1|scaffold_318383 (48558-48706) | |
| 1408-1553, gnl|fr1|chrUn (84992018-84991861) | |
| 1408-1553, gnl|galGal2|chr19 (5033094-5033250) | |
| 1408-1553, gnl|hg17|chr17 (1501689-1501848) | |
| 1408-1553, gnl|Hg17|chr17 (1501836-1501691) | |
| 1408-1553, gnl|mm7|chr11 (75589993-75589837) | |
| 1408-1553, gnl|Mm7|chr11 (75589844-75589989) | |
| 1408-1553, gnl|monDom2|scaffold_86 (2823421-2823575) | |
| 1408-1553, gnl|oryCun1|scaffold_191799 (7983-8142) | |
| 1408-1553, gnl|rheMac2|chr16 (1452635-1452794) | |
| 1408-1553, gnl|rn3|chr10 (62843529-62843373) | |
| 1408-1553, gnl|tetNig1|chr10 (10154105-10154254) | |
| 1408-1553, gnl|xenTro1|scaffold_416 (813094-812942) | |
| 1895-2228, gnl|bosTau2|chr19 (17291560-17291226) | |
| 1895-2228, gnl|Hg17|chr17 (1501001-1500674) | |
| 1895-2228, gnl|Mm7|chr11 (75590708-75591019) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| lnt (0.426925) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| eep (0.367692) | |
| ebs (0.354904) | |
| fty (0.351679) | |
| cty (0.31224) | |
| cag (0.302389) | |
| pty (0.285429) | |
| cly (0.241284) | |
| med (0.232504) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| jca (0.22792) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| eje (0.197668) | |
| eye (0.170503) | |
| eli (0.151814) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eru (0.120048) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.426925) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| eep (0.367692) | |
| ebs (0.354904) | |
| fty (0.351679) | |
| cty (0.31224) | |
| cag (0.302389) | |
| pty (0.285429) | |
| cly (0.241284) | |
| med (0.232504) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| jca (0.22792) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| eje (0.197668) | |
| eye (0.170503) | |
| eli (0.151814) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eru (0.120048) |