Non-Coding RNA Search

Ss1.1-Pig4-TMW8032F20.3

Sequence:


               
               TTTGCAGTCCACTGTACCTGGGTCACAAGCAATGCCTACTCCAGCCCAAGTGTGGTCCTG
GCCTCTTACAATCATGATGGCACCAGGAATATTTTAGATGATTTTAGAGAAGCTTACTTT
TGGCTAAGGCAAAATACAGATGAACATGCCCGAGTGATGTCTTGGTGGGATTACGGCTAT
CAAATAGCTGGGATGGCCAATAGAACTACTTTGGTGGATAATAACACTTGGAATAACAGC
CACATAGCACTGGTGGGAAAAGCTATGTCTTCAAATGAAACAGCAGCGTATAAAATCATG
AGGAGTCTGGATGTAGATTATGTTTTGGTTATTTTTGGAGGGGTTATTGGATATTCTGGT
GATGACATCAACAAGTTTCTCTGGATGGTTAGAATAGCTGAAGGGGAACATCCAAAAGAC
ATTCGGGAAAGTGACTATTTCACCCCACAAGGAGAATTCCGCGTAGACAAAGCAGGATCC
CCTACTTTGTTGAATTGCCTTATGTATAAAATGTCATACTACAGATTTGGAGAAATGCAG
CTGGATTTCCGTACACCCCCAGGTTTCGATAGAACACGCAATGCTGAGATTGGAAACAAG
GACATTAAATTCAAGCATTTGGAGGAGGCCTTTACCTCAGAACACTGGCTTGTAAGGATA
TATAAAGTGAAAGCACCTGATAACAGGGAGACTTTAGACCATAAACCTCGAGTAACCAAC
ATTTTCCCAAAACAGAAGTATTTGTCAAAGAAGACCGCAAAAAGGAAGCGAGGCTACATT
AAAAATAAACTAGTTTTTAAGAAAGGCAAGAAAATATCTAAGAAGACTGTTTAAATACAC
TGTTCTGGTTCCTAACTTGAAGCAGATGTCCTTGTGAGAACCGGTCTTTGCCTTTAGCTC
ATGTCATGTTTCACAGCAACAGAGGGTACAGAACCATCACTGGTCCAGGTTAATGTACAA
AACTTTCTGGCAATGCCTGATTTTAAGAATAAAATTGGCTTATTGAGAACAGCTGTTTCG
ATTTGTAATGTGAAGCAAGACAGAGCACTGCTGTAAATGTCTAACAGCAGACTTTTTTTA
TTGGTACATATTATCCTTCAAATCTGAGAATTTGGACTAATGGCACCAAAGAACCCTCTA
ATTTGGTCCCTGGCACATGCATACTTGTCAATGTTTTCATTCTTTTACAAGACCTGCATT
TTATTTGAATTACCCAGATAGCAATATGTAAAATACAGATGACAAAAATGTGATGCAAGC
TTCTTGAACCAGTAAACTAGTACAGGTCTGAGAAAGAAGTATTAGAAAAATAATTATACT
TCCTTGAACTATATTTATTTTCATGTTTCTCCAGTACAGAGAATGCAAAGGATGTTTCAT
CAAATGTACACTTTTATTGCTATTGTTTGCTCTCAGAAAAAGCTGCTGTTGCAAAGATGG
ATCTCTAATTGATTCAGATAGTTTTGTTTTGTTTATGTTGAAACATTATTGCTGCTGTTA
GCAGTTGTTTTCACCAGGTACTTACAGAGCAGATCTCATACATTGTTCATTCAAGGGCTA
AATTTATATTCTTTGGAAATCATGGCGATAGCACAGAAGCATGTTGCTTACCAGGATGGG
GTTTGGTATCTTAGTACTGAGGTTAGCATGATGTTTATATGCAAAAGATTAAGGAAGAAA
CTTTTAAAAATGAACAGGTATCCAAAGTTCATTTTGTATGACTCATCTGAATGACAAAGG
ATTTGTAAGCTTTGCCTGGATTTCTCTCATTTTTATAAACAGTTTCATACATCACGATGA
TTTGTCCTCTGCTCTATATTTTGTTAATCCCTTAAACATTTGATGAAACACTCTTTAATG
CTATATGCATTTTCTTACTTTTATTAAAAATGTGACAATTGTCAAAAAATGCACTAAAAT
GTAAATGGAGATTGAACATGTTCACTTTCCAGCTTATAGGCAACTTTATATAGACTTGAA
AATTTTCTCCTGTTCAGTAAAAGTGAAAGAGAATGGATTTTTCCTGCCACAGGATCTTTT
TTTTTATATATATATATAAATAAGCATAACATACACCACTGCTTTTGGTGGAAAAGTGCA
GAATAGTATGTACCTTTTATGAAGAAAAGTGTAATTTACAATATTCAGTGAGAATGTTAC
TGCTGATTTTCTTTTCCAAAGTGTAGAATATTCTTTGATTTATAGAATTCATTTTTGACC
CAGATGATGGTTCTTTTACAGACCAATAAAATGGTTCAACATTTTCACAAATAAAGTGTA
ACTAAATCTGGATTTCTGATACCTTGTCATTTGGGGGATTTTATTTTACTTTGTTGCTTT
AAAATTCAATGCAGAGAAGTTGTTGACTGTAGGGGAAATAAAGTTAATTCAAATTTTGTG
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGCAGTCCACTGTACCTGGGTCACAAGCAATGCCTACTCCAGCCCAAGTGTGGTCCTG
GCCTCTTACAATCATGATGGCACCAGGAATATTTTAGATGATTTTAGAGAAGCTTACTTT
TGGCTAAGGCAAAATACAGATGAACATGCCCGAGTGATGTCTTGGTGGGATTACGGCTAT
CAAATAGCTGGGATGGCCAATAGAACTACTTTGGTGGATAATAACACTTGGAATAACAGC
CACATAGCACTGGTGGGAAAAGCTATGTCTTCAAATGAAACAGCAGCGTATAAAATCATG
AGGAGTCTGGATGTAGATTATGTTTTGGTTATTTTTGGAGGGGTTATTGGATATTCTGGT
GATGACATCAACAAGTTTCTCTGGATGGTTAGAATAGCTGAAGGGGAACATCCAAAAGAC
ATTCGGGAAAGTGACTATTTCACCCCACAAGGAGAATTCCGCGTAGACAAAGCAGGATCC
CCTACTTTGTTGAATTGCCTTATGTATAAAATGTCATACTACAGATTTGGAGAAATGCAG
CTGGATTTCCGTACACCCCCAGGTTTCGATAGAACACGCAATGCTGAGATTGGAAACAAG
GACATTAAATTCAAGCATTTGGAGGAGGCCTTTACCTCAGAACACTGGCTTGTAAGGATA
TATAAAGTGAAAGCACCTGATAACAGGGAGACTTTAGACCATAAACCTCGAGTAACCAAC
ATTTTCCCAAAACAGAAGTATTTGTCAAAGAAGACCGCAAAAAGGAAGCGAGGCTACATT
AAAAATAAACTAGTTTTTAAGAAAGGCAAGAAAATATCTAAGAAGACTGTTTAAATACAC
TGTTCTGGTTCCTAACTTGAAGCAGATGTCCTTGTGAGAACCGGTCTTTGCCTTTAGCTC
ATGTCATGTTTCACAGCAACAGAGGGTACAGAACCATCACTGGTCCAGGTTAATGTACAA
AACTTTCTGGCAATGCCTGATTTTAAGAATAAAATTGGCTTATTGAGAACAGCTGTTTCG
ATTTGTAATGTGAAGCAAGACAGAGCACTGCTGTAAATGTCTAACAGCAGACTTTTTTTA
TTGGTACATATTATCCTTCAAATCTGAGAATTTGGACTAATGGCACCAAAGAACCCTCTA
ATTTGGTCCCTGGCACATGCATACTTGTCAATGTTTTCATTCTTTTACAAGACCTGCATT
TTATTTGAATTACCCAGATAGCAATATGTAAAATACAGATGACAAAAATGTGATGCAAGC
TTCTTGAACCAGTAAACTAGTACAGGTCTGAGAAAGAAGTATTAGAAAAATAATTATACT
TCCTTGAACTATATTTATTTTCATGTTTCTCCAGTACAGAGAATGCAAAGGATGTTTCAT
CAAATGTACACTTTTATTGCTATTGTTTGCTCTCAGAAAAAGCTGCTGTTGCAAAGATGG
ATCTCTAATTGATTCAGATAGTTTTGTTTTGTTTATGTTGAAACATTATTGCTGCTGTTA
GCAGTTGTTTTCACCAGGTACTTACAGAGCAGATCTCATACATTGTTCATTCAAGGGCTA
AATTTATATTCTTTGGAAATCATGGCGATAGCACAGAAGCATGTTGCTTACCAGGATGGG
GTTTGGTATCTTAGTACTGAGGTTAGCATGATGTTTATATGCAAAAGATTAAGGAAGAAA
CTTTTAAAAATGAACAGGTATCCAAAGTTCATTTTGTATGACTCATCTGAATGACAAAGG
ATTTGTAAGCTTTGCCTGGATTTCTCTCATTTTTATAAACAGTTTCATACATCACGATGA
TTTGTCCTCTGCTCTATATTTTGTTAATCCCTTAAACATTTGATGAAACACTCTTTAATG
CTATATGCATTTTCTTACTTTTATTAAAAATGTGACAATTGTCAAAAAATGCACTAAAAT
GTAAATGGAGATTGAACATGTTCACTTTCCAGCTTATAGGCAACTTTATATAGACTTGAA
AATTTTCTCCTGTTCAGTAAAAGTGAAAGAGAATGGATTTTTCCTGCCACAGGATCTTTT
TTTTTATATATATATATAAATAAGCATAACATACACCACTGCTTTTGGTGGAAAAGTGCA
GAATAGTATGTACCTTTTATGAAGAAAAGTGTAATTTACAATATTCAGTGAGAATGTTAC
TGCTGATTTTCTTTTCCAAAGTGTAGAATATTCTTTGATTTATAGAATTCATTTTTGACC
CAGATGATGGTTCTTTTACAGACCAATAAAATGGTTCAACATTTTCACAAATAAAGTGTA
ACTAAATCTGGATTTCTGATACCTTGTCATTTGGGGGATTTTATTTTACTTTGTTGCTTT
AAAATTCAATGCAGAGAAGTTGTTGACTGTAGGGGAAATAAAGTTAATTCAAATTTTGTG
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96KY7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96KY7_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1030-1218, - strand, RNAz p=0.88121
               

               
               1832-1950, + strand, RNAz p=0.848365

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1030-1218, - strand, RNAz p=0.88121
               

               
               1832-1950, + strand, RNAz p=0.848365

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK075380, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK075380, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               252-437, gnl|bosTau2|chr22 (4274838-4275023)
               

               
               252-437, gnl|Hg17|chr3 (31642449-31642634)
               

               
               252-437, gnl|Mm7|chr9 (114915684-114915433)
               


               
               752-2400, gnl|bosTau2|chr22 (4282139-4283796)
               

               
               752-2400, gnl|Hg17|chr3 (31652478-31654114)
               

               
               752-2400, gnl|Mm7|chr9 (114908857-114907283)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               252-437, gnl|bosTau2|chr22 (4274838-4275023)
               

               
               252-437, gnl|Hg17|chr3 (31642449-31642634)
               

               
               252-437, gnl|Mm7|chr9 (114915684-114915433)
               


               
               752-2400, gnl|bosTau2|chr22 (4282139-4283796)
               

               
               752-2400, gnl|Hg17|chr3 (31652478-31654114)
               

               
               752-2400, gnl|Mm7|chr9 (114908857-114907283)

Expressed library(ies): 34 entry(ies)

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Expressed library(ies): 34 entry(ies)

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               tes (1.03907)
               

               
               liv (1.02399)
               

               
               fco (0.78604)
               

               
               tra (0.738552)
               

               
               mgp (0.692042)
               

               
               tbr (0.462535)
               

               
               mgm (0.360685)
               

               
               jca (0.34188)
               

               
               eye (0.341006)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               spl (0.286369)
               

               
               pty (0.285429)
               

               
               ret (0.257467)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.03907)
               

               
               liv (1.02399)
               

               
               fco (0.78604)
               

               
               tra (0.738552)
               

               
               mgp (0.692042)
               

               
               tbr (0.462535)
               

               
               mgm (0.360685)
               

               
               jca (0.34188)
               

               
               eye (0.341006)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               spl (0.286369)
               

               
               pty (0.285429)
               

               
               ret (0.257467)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1030-1218, - strand, RNAz p=0.88121
	1832-1950, + strand, RNAz p=0.848365

	252-437, gnl\|bosTau2\|chr22 (4274838-4275023)
	252-437, gnl\|Hg17\|chr3 (31642449-31642634)
	252-437, gnl\|Mm7\|chr9 (114915684-114915433)

	752-2400, gnl\|bosTau2\|chr22 (4282139-4283796)
	752-2400, gnl\|Hg17\|chr3 (31652478-31654114)
	752-2400, gnl\|Mm7\|chr9 (114908857-114907283)

	tes (1.03907)
	liv (1.02399)
	fco (0.78604)
	tra (0.738552)
	mgp (0.692042)
	tbr (0.462535)
	mgm (0.360685)
	jca (0.34188)
	eye (0.341006)
	isp (0.300752)
	bfe (0.299715)
	spl (0.286369)
	pty (0.285429)
	ret (0.257467)
	hea (0.204499)
	jej (0.197844)
	fcc (0.197785)
	aor (0.195274)
	col (0.195008)
	sag (0.182715)
	sin (0.174948)
	nje (0.16592)
	csp (0.161186)
	mga (0.160205)
	fat (0.147427)
	ski (0.146735)
	nca (0.136874)
	nmm (0.132802)
	ute (0.132784)
	ova (0.129132)
	bla (0.124347)
	ebs (0.118301)
	cty (0.10408)
	ldo (0.0970026)