Non-Coding RNA Search

Ss1.1-Pig4-TMW8032G11.3

Sequence:


               
               CCAAGCAGTCCCCAGGTGACCACCTCGACCCCTTCCTCCGGCAGCACTGAGGCCCAGGGG
GTGGCCGGTCCAGCAGCTGAGATCACAGTGAGTGGTGGCCCTGGAACTGATAGCAAGGAC
AGTGGTGAGCTGGGCTCCCTCCCACTGGGCCCGACAGCGCTGGATACCCGGCCGCTGCAG
TCCTCTGCCCTGTTGGACAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAGTTCATCCGGA
CCCAACCCTTCTACCTCCTTTGAGCCCATCAAGGCAGACCCCACAGGCGTCCTGGAACTC
CCCAAAGAGCTGTCAGAAATCTTTGATCCCACGCGAGAGTGCATGAACTCAGAGCTCTTG
GAGGAGCTGATGTCCTCAGAAGTGTTTGCACCCCTCCTCCGCCTTTCTCCACCCCCTGGA
GACCACGATTACATCTACAACCTGGACGAGAGTGAAGGTGTCTGTGACCTCTTTGATGTG
CCTGTTCTCAACCTCTGACTGACAAGGGCATGCCCTTTGTGGCTGGGACACAGACTGTCT
GACCTGGGGGCTGCCTGGGGACCTCCCCGACCCCATCCCTACACAGCTTGAGAGCTGCAG
ACTCCTGGCTTCCCCAGACTTCCCTCACTGCACAGTTCTGGCCACAAGTCCTACTCCTGC
ACCAACACCTGTACGGTGCTGGCAGAGCAGGGGCAAGGGGCTTAGCCCACTCCACGTGGA
GCCAAAGTGTTTGCCTCTCCTGTTTTGGAGCCTTCCCCTACCTAGTACCCTCCCTGGGCC
CTCCCAGAGTTGAGGCTCAGCTGCCACCCAGTGGCACAGAACCGAGGACCCTCCATCACC
CTCATAGGGCAGCTTGTCCAGCCCCACTGTCTGGTACCTGTCAGCCCCTGTCCCCTCCAG
GAGGAAGCATGGGGTACTTGCCAGCACCACCCAGCCTCCTTCGCTTCTGCCCACACGCAG
TCATACAGCTCTCCTGGTCCTCTCGTGTGCCCCCTTCTGCTGGGCCCCTGGCCCTGAGGA
CCTGTAGGTGGTGGTAAGGCTGCCAACAGGAAGGAGCAGAGAGCTCCAGCTGGGAATCTG
GGCGAGTGAGTCCCTGAGGATTGGCCGAATCTCCGTCTGCCCCCAGCCACCCTCTTGTTT
ATTCATTTACCCTGTTAGAGCCATTTGCAGAGATTTAGAAAGATTTGCAGTAACAAATGG
ATTCCTATATAAAGATTATTTTTATACTTTTTGCAGCAAAAGGAAATTGTAATATTTGTA
CAGTGTCCAAGTGAATAAAGACCGTGCCTAAGGCTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAGCAGTCCCCAGGTGACCACCTCGACCCCTTCCTCCGGCAGCACTGAGGCCCAGGGG
GTGGCCGGTCCAGCAGCTGAGATCACAGTGAGTGGTGGCCCTGGAACTGATAGCAAGGAC
AGTGGTGAGCTGGGCTCCCTCCCACTGGGCCCGACAGCGCTGGATACCCGGCCGCTGCAG
TCCTCTGCCCTGTTGGACAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAGTTCATCCGGA
CCCAACCCTTCTACCTCCTTTGAGCCCATCAAGGCAGACCCCACAGGCGTCCTGGAACTC
CCCAAAGAGCTGTCAGAAATCTTTGATCCCACGCGAGAGTGCATGAACTCAGAGCTCTTG
GAGGAGCTGATGTCCTCAGAAGTGTTTGCACCCCTCCTCCGCCTTTCTCCACCCCCTGGA
GACCACGATTACATCTACAACCTGGACGAGAGTGAAGGTGTCTGTGACCTCTTTGATGTG
CCTGTTCTCAACCTCTGACTGACAAGGGCATGCCCTTTGTGGCTGGGACACAGACTGTCT
GACCTGGGGGCTGCCTGGGGACCTCCCCGACCCCATCCCTACACAGCTTGAGAGCTGCAG
ACTCCTGGCTTCCCCAGACTTCCCTCACTGCACAGTTCTGGCCACAAGTCCTACTCCTGC
ACCAACACCTGTACGGTGCTGGCAGAGCAGGGGCAAGGGGCTTAGCCCACTCCACGTGGA
GCCAAAGTGTTTGCCTCTCCTGTTTTGGAGCCTTCCCCTACCTAGTACCCTCCCTGGGCC
CTCCCAGAGTTGAGGCTCAGCTGCCACCCAGTGGCACAGAACCGAGGACCCTCCATCACC
CTCATAGGGCAGCTTGTCCAGCCCCACTGTCTGGTACCTGTCAGCCCCTGTCCCCTCCAG
GAGGAAGCATGGGGTACTTGCCAGCACCACCCAGCCTCCTTCGCTTCTGCCCACACGCAG
TCATACAGCTCTCCTGGTCCTCTCGTGTGCCCCCTTCTGCTGGGCCCCTGGCCCTGAGGA
CCTGTAGGTGGTGGTAAGGCTGCCAACAGGAAGGAGCAGAGAGCTCCAGCTGGGAATCTG
GGCGAGTGAGTCCCTGAGGATTGGCCGAATCTCCGTCTGCCCCCAGCCACCCTCTTGTTT
ATTCATTTACCCTGTTAGAGCCATTTGCAGAGATTTAGAAAGATTTGCAGTAACAAATGG
ATTCCTATATAAAGATTATTTTTATACTTTTTGCAGCAAAAGGAAATTGTAATATTTGTA
CAGTGTCCAAGTGAATAAAGACCGTGCCTAAGGCTAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61858546|ref|XP_603781.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61858546|ref|XP_603781.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               527-941, - strand, RNAz p=0.997538

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               527-941, - strand, RNAz p=0.997538

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               86-287, gnl|bosTau2|chr18 (28378251-28378446)
               

               
               86-287, gnl|Hg17|chr16 (65787183-65787408)
               

               
               86-287, gnl|Mm7|chr8 (103899889-103900102)
               


               
               368-1296, gnl|bosTau2|chr18 (28380816-28381754)
               

               
               368-1296, gnl|Hg17|chr16 (65789397-65790322)
               

               
               368-1296, gnl|Mm7|chr8 (103903197-103904009)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-287, gnl|bosTau2|chr18 (28378251-28378446)
               

               
               86-287, gnl|Hg17|chr16 (65787183-65787408)
               

               
               86-287, gnl|Mm7|chr8 (103899889-103900102)
               


               
               368-1296, gnl|bosTau2|chr18 (28380816-28381754)
               

               
               368-1296, gnl|Hg17|chr16 (65789397-65790322)
               

               
               368-1296, gnl|Mm7|chr8 (103903197-103904009)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ill (0.351185)
               

               
               cly (0.241284)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               cly (0.241284)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               nbm (0.0993246)

	86-287, gnl\|bosTau2\|chr18 (28378251-28378446)
	86-287, gnl\|Hg17\|chr16 (65787183-65787408)
	86-287, gnl\|Mm7\|chr8 (103899889-103900102)

	368-1296, gnl\|bosTau2\|chr18 (28380816-28381754)
	368-1296, gnl\|Hg17\|chr16 (65789397-65790322)
	368-1296, gnl\|Mm7\|chr8 (103903197-103904009)

	ill (0.351185)
	cly (0.241284)
	mas (0.210305)
	cty (0.20816)
	ton (0.1755)
	csp (0.161186)
	lnt (0.142308)
	cov (0.132153)
	nbm (0.0993246)