Non-Coding RNA Search

Ss1.1-Pig4-TMW8032H01.3

Sequence:


               
               GGAAGAAGGGGAAGAGGAGGTTCAGGAAGATTTGACTGAGGAGAAAAAAAGGCAACTGGA
ACATAATGCTGAGGAGACCTATGGTGAAAATGATGAAAATGCCGATGAGAAAAACAATGA
TGGAGAAGAGCAAGAAGTTCGAGAGGACAACCGCCCCAAAGGCCGAGAGGAGCACTATGA
GGAGGAGGACGAGGAGGAGGAGGATGGGGCGGCTGCTGCTGAGAAATCACGGCGAAGAGC
TGAAATGTAGCAGTGCCCAATCTCACAGACAGTGCTCAGCTGACGGATTCTTTTCAAGCT
GCTCAAAAATAAATCTGCCTACTGAACTCTAGGATATTTAATTACAAAAATTAAGAATTT
AGACTTTTTTAACTTTTATATTAGAAATGCTCATACATTTATATGAATATATTTTGATAA
CCTAGCTTAGAGCCTCTTTTTATATTCAAGCAAAACATGAATGAGAAGAACAACAGCGAA
GCAGACCTTAGGCTATGAATCTCATTTTTCATAGATTATGTGATGTTGGAAGAGACATTG
ATTTTGTCTATGTTTTAACTTGTTAACTTCTCTGTCTTCTAGTTTTCAGGTGTTCTGTTA
ATTTGCCTTTGATGAAATGCAGGGTTTCAAAATAGGGAATACTGCAAAATGCTGTGCAGA
CTTTAAGAAGAATGGTCAGTTTACTAACTGCTGCCTTTCCAAGGTTCTTGTGTATAGTTC
TGAAAGAATTTTCACCAGTTTGTGTATCTCTGGGATAAGAGCCATGGACAGAGTTACACA
CAGAGAGATACTTTTGTTATAAAGACACTGTTTTTCAGGCTTTTTAGATCAGTTAGAAAA
ATGTTTGGCTTTACTTAAAATCACAGCTCTTCCTCTTGAAAGGAATTACATTTAAAAGTG
AAACAATACTAAAACTCACTTGACAGTATTCTAGACTTAGATATTTCAGTATTCAAACAA
GGTATGACACATCAGTGTATTAACCTTTTTGAAGGACTGACACCTTGTTTAATAACTAAT
TTAGTGTGTATGGGTGGTGTCTTCCATGTGAACACCCCTTCTTTCCTGGAGTCACCCAGT
GATATCCTTTTTTAGTATCTAGTTCTCTACAGTAATATATATTTCCCCTACAGGCTCTGT
GCCCTAATATGTAATCTTCGGTGACCAGCATGAATATGAAGACATGCCAAATTGTATAAT
AGAATAGGATATTTTTCAAAAACATTGGTGAAATATACATGGTGATATAGTTGACCCTCA
TGATTTCTCCATTTGCTGGGATTGGGTCTGAATTATGCCCATGGATAGACATTTTAATGA
TTATGAATTATTTTTAAAAATCCCTTAAAATAAAAAAATTAAAAATCAAAAATTTCTCAT
TGGGTATAGACATATTTCAGTCTTGAACATAGATTTTTAACTCTATAGAACTAGGTAATA
TGATACGTATGTGTGTGGTTTTATAATACTACTTTCAAATTAACAAAAACATTCAATTTC
TACCATTGTTGTAAGAATGTAATTTTATTTTTTAATAACCACACTCATGTATGGTTTTGA
TTATCCCAGTTGAGTGATTGTGTATGTATGCATAGGAATGTTTTATTCAAATGTATTTTG
GATTTTCAGTAATCATAAATCAGATCTTACTTTTATGTATAAAAATCCTTTATGTAATGT
AAAATGTATAATATTGTACATAATATTCAGAATACAATTATTTTGGTAAATTAGTTTGTA
TTTTTAATGTCCCAGTTCCAGTATTTAATTATTTGAAACATATTGAAACTTGGTAATAGT
CAATAAAGCTATAAAAAGCAAGTGGTAAATCTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGAAGGGGAAGAGGAGGTTCAGGAAGATTTGACTGAGGAGAAAAAAAGGCAACTGGA
ACATAATGCTGAGGAGACCTATGGTGAAAATGATGAAAATGCCGATGAGAAAAACAATGA
TGGAGAAGAGCAAGAAGTTCGAGAGGACAACCGCCCCAAAGGCCGAGAGGAGCACTATGA
GGAGGAGGACGAGGAGGAGGAGGATGGGGCGGCTGCTGCTGAGAAATCACGGCGAAGAGC
TGAAATGTAGCAGTGCCCAATCTCACAGACAGTGCTCAGCTGACGGATTCTTTTCAAGCT
GCTCAAAAATAAATCTGCCTACTGAACTCTAGGATATTTAATTACAAAAATTAAGAATTT
AGACTTTTTTAACTTTTATATTAGAAATGCTCATACATTTATATGAATATATTTTGATAA
CCTAGCTTAGAGCCTCTTTTTATATTCAAGCAAAACATGAATGAGAAGAACAACAGCGAA
GCAGACCTTAGGCTATGAATCTCATTTTTCATAGATTATGTGATGTTGGAAGAGACATTG
ATTTTGTCTATGTTTTAACTTGTTAACTTCTCTGTCTTCTAGTTTTCAGGTGTTCTGTTA
ATTTGCCTTTGATGAAATGCAGGGTTTCAAAATAGGGAATACTGCAAAATGCTGTGCAGA
CTTTAAGAAGAATGGTCAGTTTACTAACTGCTGCCTTTCCAAGGTTCTTGTGTATAGTTC
TGAAAGAATTTTCACCAGTTTGTGTATCTCTGGGATAAGAGCCATGGACAGAGTTACACA
CAGAGAGATACTTTTGTTATAAAGACACTGTTTTTCAGGCTTTTTAGATCAGTTAGAAAA
ATGTTTGGCTTTACTTAAAATCACAGCTCTTCCTCTTGAAAGGAATTACATTTAAAAGTG
AAACAATACTAAAACTCACTTGACAGTATTCTAGACTTAGATATTTCAGTATTCAAACAA
GGTATGACACATCAGTGTATTAACCTTTTTGAAGGACTGACACCTTGTTTAATAACTAAT
TTAGTGTGTATGGGTGGTGTCTTCCATGTGAACACCCCTTCTTTCCTGGAGTCACCCAGT
GATATCCTTTTTTAGTATCTAGTTCTCTACAGTAATATATATTTCCCCTACAGGCTCTGT
GCCCTAATATGTAATCTTCGGTGACCAGCATGAATATGAAGACATGCCAAATTGTATAAT
AGAATAGGATATTTTTCAAAAACATTGGTGAAATATACATGGTGATATAGTTGACCCTCA
TGATTTCTCCATTTGCTGGGATTGGGTCTGAATTATGCCCATGGATAGACATTTTAATGA
TTATGAATTATTTTTAAAAATCCCTTAAAATAAAAAAATTAAAAATCAAAAATTTCTCAT
TGGGTATAGACATATTTCAGTCTTGAACATAGATTTTTAACTCTATAGAACTAGGTAATA
TGATACGTATGTGTGTGGTTTTATAATACTACTTTCAAATTAACAAAAACATTCAATTTC
TACCATTGTTGTAAGAATGTAATTTTATTTTTTAATAACCACACTCATGTATGGTTTTGA
TTATCCCAGTTGAGTGATTGTGTATGTATGCATAGGAATGTTTTATTCAAATGTATTTTG
GATTTTCAGTAATCATAAATCAGATCTTACTTTTATGTATAAAAATCCTTTATGTAATGT
AAAATGTATAATATTGTACATAATATTCAGAATACAATTATTTTGGTAAATTAGTTTGTA
TTTTTAATGTCCCAGTTCCAGTATTTAATTATTTGAAACATATTGAAACTTGGTAATAGT
CAATAAAGCTATAAAAAGCAAGTGGTAAATCTTTTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8BWP9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BWP9_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               98-1836, gnl|bosTau2|chr1 (66568472-66566738)
               

               
               98-1836, gnl|Hg17|chr3 (169210911-169209164)
               

               
               98-1836, gnl|Mm7|chr3 (75983824-75982116)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-1836, gnl|bosTau2|chr1 (66568472-66566738)
               

               
               98-1836, gnl|Hg17|chr3 (169210911-169209164)
               

               
               98-1836, gnl|Mm7|chr3 (75983824-75982116)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               ret (0.901133)
               

               
               tra (0.861645)
               

               
               vin (0.665115)
               

               
               bfe (0.449573)
               

               
               kid (0.389206)
               

               
               ova (0.387397)
               

               
               mcp (0.341297)
               

               
               fat (0.294855)
               

               
               nca (0.273748)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.901133)
               

               
               tra (0.861645)
               

               
               vin (0.665115)
               

               
               bfe (0.449573)
               

               
               kid (0.389206)
               

               
               ova (0.387397)
               

               
               mcp (0.341297)
               

               
               fat (0.294855)
               

               
               nca (0.273748)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	98-1836, gnl\|bosTau2\|chr1 (66568472-66566738)
	98-1836, gnl\|Hg17\|chr3 (169210911-169209164)
	98-1836, gnl\|Mm7\|chr3 (75983824-75982116)

	ret (0.901133)
	tra (0.861645)
	vin (0.665115)
	bfe (0.449573)
	kid (0.389206)
	ova (0.387397)
	mcp (0.341297)
	fat (0.294855)
	nca (0.273748)
	thg (0.253582)
	cbe (0.239234)
	mgp (0.230681)
	fli (0.202881)
	ton (0.1755)
	duo (0.172801)
	eye (0.170503)
	fhi (0.169578)
	fco (0.157208)
	tbr (0.154178)
	isp (0.150376)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	pty (0.142714)
	eep (0.122564)
	eru (0.120048)
	jej (0.0989218)