Non-Coding RNA Search

Ss1.1-Pig4-TMW8032H06.5

Sequence:


               
               GGCACCATTAAAAGTCAGCTGGAGGAGTTCCTGCTGTAGCACAATGGGATCAGCAGTGTC
TCTGCATCGCAGGGGTACGGGTTCCATCCCCAGCCCAGCAAAGCGGGTTAAGGTTCTGGC
ATTGTTGCAACTGCAACCTGGTCACAGCTGTAGCTCAGATCTGATCCTGAGAACTCCATA
TGACATGGGGGCAGCCAAAAAAGAAGGAAAATTTTTAAAGGTCAGCTGGAGAGACCTAAA
TCCCCCTCCCTTCACCAGGTACCCAAGAAGTCAGATGTGATGCTTCCCTGGGCCCTCTTC
CCCACCCTCTCCACCCTCCATCTGCCTACCCCAGCCTGGGCCCCTGTGCAAAGCAAAGTT
CCTGTCAGGGCAGCATCTCCCTACTGAGCTGGACCAACAAGCAGAATGCCCCCTCCTCCT
AACCCCAGCTAGGCTGTGGAACAGACCGAAAAAGGCTCGGATTGCAGAAACCCAGCCCTG
CCCCTGCCCCTGCATCCTCCCCCCAACTAGGTGCCAAAGCTTCCTGAAACCAGAAAGCTT
ATTTTCAATGGACTGGACATTTCTCTCCTAATACAAAGCAGCTTCACTCTTCCTCCATCC
CACCCTCAAGAGAAATAGCCCACCACTCTGTTAGCACTGCCCCCCAAACAATGCCCCAAC
ACAGGCAGCCAGCACAGCCAGCACCCCCATCTTGCCCTTTGCCTCCTCTCTGGACCTTGG
CTCCAGGACCGATGGGTGTGAAGGCTCCCCAAGCCCTTCATACCTGAAAGCTAAACCAAA
TCAGCCTTAAGTTACCTCCCACCCAAGAACCAAACCTAAAAATACCACCTCATTTCTAAC
CCTCCCAGCAGACCTGGTATGAAAAGACTTCCCTGGAGGGGAGAGCCATTTCCCACCTCC
CCAGAGGTAACTGTCACCCTGAGACTGTTGAGGGAGAAAGTGTGTTCTGAAGGACAGTTC
CTCTCCCAACTCAGAGAACCCCTCCCTACTTTCTGCTCCCACCACTGACAGTCTCCAGGG
CAGGATGAGCAGAAGTGGTGTGGCAGAAGGTACTCACTTTGGAAGACCTTGGAAAAGCCC
ACTCTGTTGTCTAAGAGCTCGTGGCTGTCCTCTCCTGCAGGTGGTGGTTGCCCTTCCCTG
TGCTCCAAAGAAGGTACCGGTGTTTGCCCTGCATCCTTGCAGCCTCCCCGCCACACCTGT
TGTACTGAGGACTGAGATCCTTTTATTATCGAAAGCAGCCGTCCCACCCCCACCCCCACC
CCCCGCTTCCCTCTGCTTAAACTGGAACACCTGAAGGAGTTCCCAGTGTGGCTCAGGGGC
AGACCCAACTAATATCCATGAGGCTTCAGGTTAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACCATTAAAAGTCAGCTGGAGGAGTTCCTGCTGTAGCACAATGGGATCAGCAGTGTC
TCTGCATCGCAGGGGTACGGGTTCCATCCCCAGCCCAGCAAAGCGGGTTAAGGTTCTGGC
ATTGTTGCAACTGCAACCTGGTCACAGCTGTAGCTCAGATCTGATCCTGAGAACTCCATA
TGACATGGGGGCAGCCAAAAAAGAAGGAAAATTTTTAAAGGTCAGCTGGAGAGACCTAAA
TCCCCCTCCCTTCACCAGGTACCCAAGAAGTCAGATGTGATGCTTCCCTGGGCCCTCTTC
CCCACCCTCTCCACCCTCCATCTGCCTACCCCAGCCTGGGCCCCTGTGCAAAGCAAAGTT
CCTGTCAGGGCAGCATCTCCCTACTGAGCTGGACCAACAAGCAGAATGCCCCCTCCTCCT
AACCCCAGCTAGGCTGTGGAACAGACCGAAAAAGGCTCGGATTGCAGAAACCCAGCCCTG
CCCCTGCCCCTGCATCCTCCCCCCAACTAGGTGCCAAAGCTTCCTGAAACCAGAAAGCTT
ATTTTCAATGGACTGGACATTTCTCTCCTAATACAAAGCAGCTTCACTCTTCCTCCATCC
CACCCTCAAGAGAAATAGCCCACCACTCTGTTAGCACTGCCCCCCAAACAATGCCCCAAC
ACAGGCAGCCAGCACAGCCAGCACCCCCATCTTGCCCTTTGCCTCCTCTCTGGACCTTGG
CTCCAGGACCGATGGGTGTGAAGGCTCCCCAAGCCCTTCATACCTGAAAGCTAAACCAAA
TCAGCCTTAAGTTACCTCCCACCCAAGAACCAAACCTAAAAATACCACCTCATTTCTAAC
CCTCCCAGCAGACCTGGTATGAAAAGACTTCCCTGGAGGGGAGAGCCATTTCCCACCTCC
CCAGAGGTAACTGTCACCCTGAGACTGTTGAGGGAGAAAGTGTGTTCTGAAGGACAGTTC
CTCTCCCAACTCAGAGAACCCCTCCCTACTTTCTGCTCCCACCACTGACAGTCTCCAGGG
CAGGATGAGCAGAAGTGGTGTGGCAGAAGGTACTCACTTTGGAAGACCTTGGAAAAGCCC
ACTCTGTTGTCTAAGAGCTCGTGGCTGTCCTCTCCTGCAGGTGGTGGTTGCCCTTCCCTG
TGCTCCAAAGAAGGTACCGGTGTTTGCCCTGCATCCTTGCAGCCTCCCCGCCACACCTGT
TGTACTGAGGACTGAGATCCTTTTATTATCGAAAGCAGCCGTCCCACCCCCACCCCCACC
CCCCGCTTCCCTCTGCTTAAACTGGAACACCTGAAGGAGTTCCCAGTGTGGCTCAGGGGC
AGACCCAACTAATATCCATGAGGCTTCAGGTTAGAT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               521-636, - strand, RNAz p=0.983825
               

               
               711-979, - strand, RNAz p=0.830567
               

               
               1010-1196, - strand, RNAz p=0.985049

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               521-636, - strand, RNAz p=0.983825
               

               
               711-979, - strand, RNAz p=0.830567
               

               
               1010-1196, - strand, RNAz p=0.985049

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               591-689, - strand, RNAmicro p=0.991058

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               591-689, - strand, RNAmicro p=0.991058

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               217-1293, gnl|bosTau2|chr10 (13937901-13938974)
               

               
               217-1293, gnl|Hg17|chr14 (22665800-22664761)
               

               
               217-1293, gnl|Mm7|chr14 (49590569-49589580)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               217-1293, gnl|bosTau2|chr10 (13937901-13938974)
               

               
               217-1293, gnl|Hg17|chr14 (22665800-22664761)
               

               
               217-1293, gnl|Mm7|chr14 (49590569-49589580)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cty (0.20816)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

	521-636, - strand, RNAz p=0.983825
	711-979, - strand, RNAz p=0.830567
	1010-1196, - strand, RNAz p=0.985049

	217-1293, gnl\|bosTau2\|chr10 (13937901-13938974)
	217-1293, gnl\|Hg17\|chr14 (22665800-22664761)
	217-1293, gnl\|Mm7\|chr14 (49590569-49589580)