Non-Coding RNA Search

Ss1.1-Pig4-TMW8032H08.3

Sequence:


               
               TCGAGGTGATTTCATCTATTTTTTCTGTTTAAGTATGTTTTGAGATTTTTGTACTTTATG
CTAGTAGCAGCCATTTACTTTTATTTTAACCAGATTAATATGTAATTAATATAAATATGG
GGCCATTCCTTTCTCAGAAGACTGTATTTATTACTTAGTTTTGGTCTAATTTAATAGGGA
ACAAGTAAGACCTTTTGAGAATAGAGGCACTTCAGCTAGATACTTCTAATCTAGGGTGTC
CCACTTTAATCCTATGGATCAAATAATACTACTGACTCATGATGTACCAAGATGTAAGAG
TGCTGATTAAGGGTGAAGTCTCAGCATTAATTCTGAATTTCACCCATTTGTTTTAAACTT
GAATGTTAGATTTTAAATAAGTTATAATTTTGTAATAGATATACTTAACTGATAGTATTA
CTAGGCCATTTTTGAGGCCTTTGTGTTTAAGCACTTTAAAATGAAAATTATTCAAAGAAC
ATGACCTGATATGCGAGATAAGAGTGAACGTCAAGATTTTAAGTTAATTTATTTCCCCCC
CTGACATTTTAAACACATGCGTCTGGTCAGCTGCTCTCTCCTTAAGGTGTTTGCCGATGA
AGTTGCACCCAGCTGAATAGTCAGAAGGTCACTGGTCGACTTTGCCCTGGAGCTGGGCAG
GTCCTTTATGTTCTTGCAGCTTCTAGTTCCACCCAAACTGCTTGGGCTTCTGCCCCCATT
TAGGAGCATTTCACTGTCATTTTATGTATTAGTTTATGAGTGTATACTTTCCATTCATCA
GTAGAAAGATTTTTCCAATTTATGGGAATGAAATTTTTTTAAAGCCTCATTTAGAAAAAC
AAGCTTTCCTACTACCCTCAAGTTTTAGTTTAGAAAAGATTAAAAAATAGAAGTCTAGAG
ATGGTATATCACTAGAATAAAATGAGATTCTGCTTTGATAATAATTAGGTTTTAAATTCA
TTTAGAGGGCCTCACATTTGAAGCAGAACAATTTTATACAGGTTACATGATGAAATGGCT
TAGCAGTTGTTCTCTGGCTCCTTTTCCTTTATAAGTTTTTGGAGGGTAGATGTTTTTGCT
CAGGCAACAGGTCCTTTTTCCCCTCTCTGCTTATCACTGTAAATTGCTCTGTCATAGATT
TTGGTTGGTTGTCTTATCCAGATCTTTTTTTTTTTTGTTACCTAACAGTAGAAGGGAAAC
CTCAGAATTCTGGGTAGTTTTAAAATGCAAGTGGAGTTCTGTGCTGCAGTGGATTAAGGA
TCCAGCATGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGAGGTGATTTCATCTATTTTTTCTGTTTAAGTATGTTTTGAGATTTTTGTACTTTATG
CTAGTAGCAGCCATTTACTTTTATTTTAACCAGATTAATATGTAATTAATATAAATATGG
GGCCATTCCTTTCTCAGAAGACTGTATTTATTACTTAGTTTTGGTCTAATTTAATAGGGA
ACAAGTAAGACCTTTTGAGAATAGAGGCACTTCAGCTAGATACTTCTAATCTAGGGTGTC
CCACTTTAATCCTATGGATCAAATAATACTACTGACTCATGATGTACCAAGATGTAAGAG
TGCTGATTAAGGGTGAAGTCTCAGCATTAATTCTGAATTTCACCCATTTGTTTTAAACTT
GAATGTTAGATTTTAAATAAGTTATAATTTTGTAATAGATATACTTAACTGATAGTATTA
CTAGGCCATTTTTGAGGCCTTTGTGTTTAAGCACTTTAAAATGAAAATTATTCAAAGAAC
ATGACCTGATATGCGAGATAAGAGTGAACGTCAAGATTTTAAGTTAATTTATTTCCCCCC
CTGACATTTTAAACACATGCGTCTGGTCAGCTGCTCTCTCCTTAAGGTGTTTGCCGATGA
AGTTGCACCCAGCTGAATAGTCAGAAGGTCACTGGTCGACTTTGCCCTGGAGCTGGGCAG
GTCCTTTATGTTCTTGCAGCTTCTAGTTCCACCCAAACTGCTTGGGCTTCTGCCCCCATT
TAGGAGCATTTCACTGTCATTTTATGTATTAGTTTATGAGTGTATACTTTCCATTCATCA
GTAGAAAGATTTTTCCAATTTATGGGAATGAAATTTTTTTAAAGCCTCATTTAGAAAAAC
AAGCTTTCCTACTACCCTCAAGTTTTAGTTTAGAAAAGATTAAAAAATAGAAGTCTAGAG
ATGGTATATCACTAGAATAAAATGAGATTCTGCTTTGATAATAATTAGGTTTTAAATTCA
TTTAGAGGGCCTCACATTTGAAGCAGAACAATTTTATACAGGTTACATGATGAAATGGCT
TAGCAGTTGTTCTCTGGCTCCTTTTCCTTTATAAGTTTTTGGAGGGTAGATGTTTTTGCT
CAGGCAACAGGTCCTTTTTCCCCTCTCTGCTTATCACTGTAAATTGCTCTGTCATAGATT
TTGGTTGGTTGTCTTATCCAGATCTTTTTTTTTTTTGTTACCTAACAGTAGAAGGGAAAC
CTCAGAATTCTGGGTAGTTTTAAAATGCAAGTGGAGTTCTGTGCTGCAGTGGATTAAGGA
TCCAGCATGGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               288-447, - strand, RNAz p=0.653478

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               288-447, - strand, RNAz p=0.653478

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               6-771, gnl|bosTau2|chr1 (44332460-44331653)
               

               
               6-771, gnl|Hg17|chr3 (196486738-196485974)
               

               
               6-771, gnl|Mm7|chr16 (30774786-30774052)
               


               
               786-1232, gnl|bosTau2|chr1 (44331498-44331039)
               

               
               786-1232, gnl|Hg17|chr3 (196485955-196485492)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-771, gnl|bosTau2|chr1 (44332460-44331653)
               

               
               6-771, gnl|Hg17|chr3 (196486738-196485974)
               

               
               6-771, gnl|Mm7|chr16 (30774786-30774052)
               


               
               786-1232, gnl|bosTau2|chr1 (44331498-44331039)
               

               
               786-1232, gnl|Hg17|chr3 (196485955-196485492)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	6-771, gnl\|bosTau2\|chr1 (44332460-44331653)
	6-771, gnl\|Hg17\|chr3 (196486738-196485974)
	6-771, gnl\|Mm7\|chr16 (30774786-30774052)

	786-1232, gnl\|bosTau2\|chr1 (44331498-44331039)
	786-1232, gnl\|Hg17\|chr3 (196485955-196485492)