Ss1.1-Pig4-TMW8032H10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGAGGACCTTTTTGGCAGCGCCCATCCGGAGGAGGGTGATTTAGATTTGGCCAGCGAG TCAACAGCACAAGCTCAGTCGAGCAAGGCAGACACCCTGTTAGCGGTAGTGAAAAGGGAG CCCGTGGAGCAGACAGGCGATGGCGAGAGGACGGACTGTGAGCCTGTAGGGCTAGAGAAG CCAGTTGAGCAGAGTAGTAAAGCCTCAGAGCACGCGGAAGCCTGTAGCGAGGAGGCCGCG GAAGCGCCCCCGGAAGCCTCAAGCCCAGAGCCCAGGGATAGCAAAGAAGACGTGAAGAAG TTTGCTTTTGAAGCTTGTAATGAAGTCCCTCCGGCTCCTAAAGAGTCCTCAGCCAGTGAG GGCGCTGATCAGAAAATGAGTTCTGTCGAAGATGACTCGGATCCAAAAAGGCTTTCCAAG GAGGAAAAGGGTCGTAGCAGTTGTGGTAGAAATTTCTGGGTCAGTGGACTTTCTTCTACC ACCAGAGCTACAGATTTGAAGAATCTTTTCAGCAAATATGGAAAGGTGGTGGGCGCCAAG GTTGTGACAAATGCCCGGAGTCCTGGAGCTCGCTGCTACGGCTTTGTTACAATGTCCACA GCAGAAGAGGCCACAAAATGCATTAACCACCTGCACAAAACAGAGCTCCATGGGAAGATG ATCTCAGTGGAAAAAGCGAAAAATGAACCTGTTGGGAAGAAAACATCTGACAAAAGAGAA GGGGAGGGGAAGAAAGAAAAGTCCAACAATGCTGACAGATCTGCAAACCTTAAGAGAGAA GATAAAATCGACAGAAAAGATGATGCTAAAAAGAGTGAAGATGGAAGTGGAGAAAAGAGT AAAGAGCAGGATGATCAGAAACCTGGCCCTTCAGAGCGTTCTCGAACCACAAAATCAGGA AGTCGAGGAACTGAGCGGACTGTAGTGATGGATAAATCTAAAGGTGTGCCTGTTATTAGT GTCAAAACATCAGGATCCAAAGAGAGAGTTTCCAAGAGCCAGGATCGCAAATCTGCTAGT AGAGAGAAGCGGTCTGTTGTGTCCTTTGATAAAGTCAAAGAGCCAAGGAAGTCAAGAGAC TCAGAGTCCCGTAGGGTGCGTGAGCGCAGTGAGCGGGAGCAGCGCATGCAGGCGCAGCTG GAGCGGGAGGAGCGAGAGCGGCTGGCGATTGCTCGCGAGAGGCTGGCCTTCCACAGACAC CGCCTGGAGCGGGAGCGCATGGAGCGGGAGCGGCTAGAACGTGAGCGCATGCATGTGGAG CATGAGCGCAGGCGTGAGCAAGAGCGAATCCACCGTGAGCGTGAGGAGCTACGGCGCCAG CAAGAGCTGCGCTATGAGCAGGAGCGGAGGCCTGCTGTGCGGAGGCCCTATGATGTGGAC GGCAGGCGAGATGATGCGTACTGGCCAGAAGCTAAGCGGGCTGCCCTAGATGAACGCTAC CATTCTGACTTCAACCGCCAGGACCGCTTCCACGACTTTGACCACAGGGACCGGGGCCGC TACCCCGATCACTCAGTCGACAGGAGAGAAGGTTCAAGGTCAATGATGGGAGAACGAGAA GGTCAGCATTACCCGGAACGCCACGGAGGACCAGAGCGCCACGGACGGGACTCTCGTGAT GGGTGGGGTGGATACGGCTCTGACAAAAGGATGAGCGAGGGCCGGGGGCTGCCTCCTCCA CCCAGACGTGACTGGGGGGACCATGGCCGAAGAATAGAGGATGACCGTGCGTGGCAGGGT GCTGCTGACGGAGGCATGATAGACAGGGACCACAAGAGGTGGCAAGGTGGCGAGAGAAGT ATGTCTGGTCACTCTGGGCCAGGTCACATGATGAACCGGGGAGGCATGTCAGGGCGAGGT AGCTTTGCCCCTGGGGGTGCCTCACGGGGCCATGTGATCCCACGCGGTGGCATGCAGGGT GGCTTCGGAGGCCAGAACCGGGGGAGCCGACCCAATGATGCCCGCTTCACTCGCCGCTAC TAAGTGCTTGGAACCCTGTGTTACGTCATGTGGCAACAAGAACGTGTTCTGTTAGGATTT CCCTTAAACTGTGTACAATAATTTTTTTTTATCTGCTGCCATATTGTAGCTCAATACAAT GTGAATTTGTTTTTTGTTCTTTTGTTTTTTTGTAATAAATGTGTTTCTGTTCACATAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGAGGACCTTTTTGGCAGCGCCCATCCGGAGGAGGGTGATTTAGATTTGGCCAGCGAG TCAACAGCACAAGCTCAGTCGAGCAAGGCAGACACCCTGTTAGCGGTAGTGAAAAGGGAG CCCGTGGAGCAGACAGGCGATGGCGAGAGGACGGACTGTGAGCCTGTAGGGCTAGAGAAG CCAGTTGAGCAGAGTAGTAAAGCCTCAGAGCACGCGGAAGCCTGTAGCGAGGAGGCCGCG GAAGCGCCCCCGGAAGCCTCAAGCCCAGAGCCCAGGGATAGCAAAGAAGACGTGAAGAAG TTTGCTTTTGAAGCTTGTAATGAAGTCCCTCCGGCTCCTAAAGAGTCCTCAGCCAGTGAG GGCGCTGATCAGAAAATGAGTTCTGTCGAAGATGACTCGGATCCAAAAAGGCTTTCCAAG GAGGAAAAGGGTCGTAGCAGTTGTGGTAGAAATTTCTGGGTCAGTGGACTTTCTTCTACC ACCAGAGCTACAGATTTGAAGAATCTTTTCAGCAAATATGGAAAGGTGGTGGGCGCCAAG GTTGTGACAAATGCCCGGAGTCCTGGAGCTCGCTGCTACGGCTTTGTTACAATGTCCACA GCAGAAGAGGCCACAAAATGCATTAACCACCTGCACAAAACAGAGCTCCATGGGAAGATG ATCTCAGTGGAAAAAGCGAAAAATGAACCTGTTGGGAAGAAAACATCTGACAAAAGAGAA GGGGAGGGGAAGAAAGAAAAGTCCAACAATGCTGACAGATCTGCAAACCTTAAGAGAGAA GATAAAATCGACAGAAAAGATGATGCTAAAAAGAGTGAAGATGGAAGTGGAGAAAAGAGT AAAGAGCAGGATGATCAGAAACCTGGCCCTTCAGAGCGTTCTCGAACCACAAAATCAGGA AGTCGAGGAACTGAGCGGACTGTAGTGATGGATAAATCTAAAGGTGTGCCTGTTATTAGT GTCAAAACATCAGGATCCAAAGAGAGAGTTTCCAAGAGCCAGGATCGCAAATCTGCTAGT AGAGAGAAGCGGTCTGTTGTGTCCTTTGATAAAGTCAAAGAGCCAAGGAAGTCAAGAGAC TCAGAGTCCCGTAGGGTGCGTGAGCGCAGTGAGCGGGAGCAGCGCATGCAGGCGCAGCTG GAGCGGGAGGAGCGAGAGCGGCTGGCGATTGCTCGCGAGAGGCTGGCCTTCCACAGACAC CGCCTGGAGCGGGAGCGCATGGAGCGGGAGCGGCTAGAACGTGAGCGCATGCATGTGGAG CATGAGCGCAGGCGTGAGCAAGAGCGAATCCACCGTGAGCGTGAGGAGCTACGGCGCCAG CAAGAGCTGCGCTATGAGCAGGAGCGGAGGCCTGCTGTGCGGAGGCCCTATGATGTGGAC GGCAGGCGAGATGATGCGTACTGGCCAGAAGCTAAGCGGGCTGCCCTAGATGAACGCTAC CATTCTGACTTCAACCGCCAGGACCGCTTCCACGACTTTGACCACAGGGACCGGGGCCGC TACCCCGATCACTCAGTCGACAGGAGAGAAGGTTCAAGGTCAATGATGGGAGAACGAGAA GGTCAGCATTACCCGGAACGCCACGGAGGACCAGAGCGCCACGGACGGGACTCTCGTGAT GGGTGGGGTGGATACGGCTCTGACAAAAGGATGAGCGAGGGCCGGGGGCTGCCTCCTCCA CCCAGACGTGACTGGGGGGACCATGGCCGAAGAATAGAGGATGACCGTGCGTGGCAGGGT GCTGCTGACGGAGGCATGATAGACAGGGACCACAAGAGGTGGCAAGGTGGCGAGAGAAGT ATGTCTGGTCACTCTGGGCCAGGTCACATGATGAACCGGGGAGGCATGTCAGGGCGAGGT AGCTTTGCCCCTGGGGGTGCCTCACGGGGCCATGTGATCCCACGCGGTGGCATGCAGGGT GGCTTCGGAGGCCAGAACCGGGGGAGCCGACCCAATGATGCCCGCTTCACTCGCCGCTAC TAAGTGCTTGGAACCCTGTGTTACGTCATGTGGCAACAAGAACGTGTTCTGTTAGGATTT CCCTTAAACTGTGTACAATAATTTTTTTTTATCTGCTGCCATATTGTAGCTCAATACAAT GTGAATTTGTTTTTTGTTCTTTTGTTTTTTTGTAATAAATGTGTTTCTGTTCACATAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 785-902, - strand, RNAz p=0.647125 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 785-902, - strand, RNAz p=0.647125 |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 1-386, gnl|bosTau2|chr7 (13362658-13362273) | |
| 1-386, gnl|canFam2|chr20 (57306124-57305654) | |
| 1-386, gnl|danRer3|chr22 (15145666-15146080) | |
| 1-386, gnl|dasNov1|scaffold_46939 (8940-8467) | |
| 1-386, gnl|echTel1|scaffold_217913 (11051-10557) | |
| 1-386, gnl|fr1|chrUn (161797932-161798306) | |
| 1-386, gnl|galGal2|chrUn (42835587-42836045) | |
| 1-386, gnl|hg17|chr19 (5599925-5600395) | |
| 1-386, gnl|Hg17|chr19 (5600131-5600516) | |
| 1-386, gnl|loxAfr1|scaffold_3490 (52812-52330) | |
| 1-386, gnl|mm7|chr17 (54808228-54808764) | |
| 1-386, gnl|Mm7|chr17 (54808434-54808885) | |
| 1-386, gnl|monDom2|scaffold_85 (3351295-3351762) | |
| 1-386, gnl|oryCun1|scaffold_82818 (5470-4967) | |
| 1-386, gnl|panTro1|chr20 (5925696-5926166) | |
| 1-386, gnl|rheMac2|chr19 (5549787-5550257) | |
| 1-386, gnl|rn3|chrUn (25180074-25179535) | |
| 1-386, gnl|tetNig1|chr1 (10581103-10581480) | |
| 1-386, gnl|xenTro1|scaffold_680 (481358-480908) | |
| 523-676, gnl|bosTau2|chr7 (13388504-13388351) | |
| 523-676, gnl|Hg17|chr19 (5604123-5604276) | |
| 523-676, gnl|Mm7|chr17 (54810479-54810631) | |
| 755-902, gnl|bosTau2|chr7 (13387845-13387698) | |
| 755-902, gnl|Hg17|chr19 (5605068-5605215) | |
| 755-902, gnl|Mm7|chr17 (54810884-54811029) | |
| 1093-1387, gnl|bosTau2|chr7 (13355582-13355287) | |
| 1093-1387, gnl|Hg17|chr19 (5612530-5612825) | |
| 1093-1387, gnl|Mm7|chr17 (54813189-54813486) | |
| 1564-1685, gnl|bosTau2|chr7 (13352490-13352369) | |
| 1564-1685, gnl|canFam2|chr20 (57292407-57292253) | |
| 1564-1685, gnl|echTel1|scaffold_59413 (94-240) | |
| 1564-1685, gnl|galGal2|chrUn (42842043-42842191) | |
| 1564-1685, gnl|hg17|chr19 (5618033-5618187) | |
| 1564-1685, gnl|Hg17|chr19 (5618054-5618175) | |
| 1564-1685, gnl|loxAfr1|scaffold_3490 (40001-39847) | |
| 1564-1685, gnl|mm7|chr17 (54814926-54815070) | |
| 1564-1685, gnl|Mm7|chr17 (54814940-54815058) | |
| 1564-1685, gnl|monDom2|scaffold_85 (3365700-3365850) | |
| 1564-1685, gnl|oryCun1|scaffold_5819 (1087-938) | |
| 1564-1685, gnl|panTro1|chr20 (5943959-5944113) | |
| 1564-1685, gnl|rheMac2|chr19 (5568163-5568315) | |
| 1564-1685, gnl|rn3|chrUn (25173772-25173628) | |
| 1942-2152, gnl|bosTau2|chr7 (13351326-13351103) | |
| 1942-2152, gnl|Hg17|chr19 (5619261-5619477) | |
| 1942-2152, gnl|Mm7|chr17 (54815723-54815941) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-386, gnl|bosTau2|chr7 (13362658-13362273) | |
| 1-386, gnl|canFam2|chr20 (57306124-57305654) | |
| 1-386, gnl|danRer3|chr22 (15145666-15146080) | |
| 1-386, gnl|dasNov1|scaffold_46939 (8940-8467) | |
| 1-386, gnl|echTel1|scaffold_217913 (11051-10557) | |
| 1-386, gnl|fr1|chrUn (161797932-161798306) | |
| 1-386, gnl|galGal2|chrUn (42835587-42836045) | |
| 1-386, gnl|hg17|chr19 (5599925-5600395) | |
| 1-386, gnl|Hg17|chr19 (5600131-5600516) | |
| 1-386, gnl|loxAfr1|scaffold_3490 (52812-52330) | |
| 1-386, gnl|mm7|chr17 (54808228-54808764) | |
| 1-386, gnl|Mm7|chr17 (54808434-54808885) | |
| 1-386, gnl|monDom2|scaffold_85 (3351295-3351762) | |
| 1-386, gnl|oryCun1|scaffold_82818 (5470-4967) | |
| 1-386, gnl|panTro1|chr20 (5925696-5926166) | |
| 1-386, gnl|rheMac2|chr19 (5549787-5550257) | |
| 1-386, gnl|rn3|chrUn (25180074-25179535) | |
| 1-386, gnl|tetNig1|chr1 (10581103-10581480) | |
| 1-386, gnl|xenTro1|scaffold_680 (481358-480908) | |
| 523-676, gnl|bosTau2|chr7 (13388504-13388351) | |
| 523-676, gnl|Hg17|chr19 (5604123-5604276) | |
| 523-676, gnl|Mm7|chr17 (54810479-54810631) | |
| 755-902, gnl|bosTau2|chr7 (13387845-13387698) | |
| 755-902, gnl|Hg17|chr19 (5605068-5605215) | |
| 755-902, gnl|Mm7|chr17 (54810884-54811029) | |
| 1093-1387, gnl|bosTau2|chr7 (13355582-13355287) | |
| 1093-1387, gnl|Hg17|chr19 (5612530-5612825) | |
| 1093-1387, gnl|Mm7|chr17 (54813189-54813486) | |
| 1564-1685, gnl|bosTau2|chr7 (13352490-13352369) | |
| 1564-1685, gnl|canFam2|chr20 (57292407-57292253) | |
| 1564-1685, gnl|echTel1|scaffold_59413 (94-240) | |
| 1564-1685, gnl|galGal2|chrUn (42842043-42842191) | |
| 1564-1685, gnl|hg17|chr19 (5618033-5618187) | |
| 1564-1685, gnl|Hg17|chr19 (5618054-5618175) | |
| 1564-1685, gnl|loxAfr1|scaffold_3490 (40001-39847) | |
| 1564-1685, gnl|mm7|chr17 (54814926-54815070) | |
| 1564-1685, gnl|Mm7|chr17 (54814940-54815058) | |
| 1564-1685, gnl|monDom2|scaffold_85 (3365700-3365850) | |
| 1564-1685, gnl|oryCun1|scaffold_5819 (1087-938) | |
| 1564-1685, gnl|panTro1|chr20 (5943959-5944113) | |
| 1564-1685, gnl|rheMac2|chr19 (5568163-5568315) | |
| 1564-1685, gnl|rn3|chrUn (25173772-25173628) | |
| 1942-2152, gnl|bosTau2|chr7 (13351326-13351103) | |
| 1942-2152, gnl|Hg17|chr19 (5619261-5619477) | |
| 1942-2152, gnl|Mm7|chr17 (54815723-54815941) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| nep (0.36785) | |
| ecc (0.345105) | |
| che (0.272628) | |
| ese (0.253004) | |
| med (0.232504) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| col (0.195008) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| ill (0.175593) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.36785) | |
| ecc (0.345105) | |
| che (0.272628) | |
| ese (0.253004) | |
| med (0.232504) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| col (0.195008) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| ill (0.175593) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| jej (0.0989218) | |
| eje (0.0988338) |