Ss1.1-Pig4-TMW8032I02.3
|
GCGGCCAGGAGGAGGGTGGATCTCCTGAGAGCCGAGCGCCCCGAGTCCTCTTCCACCTCC
TCCTGCCGCCGGGCTCTGCCGCCGCCCGTCGGGCTCCACCTTCCGCCGCTCCTGGCGCAG
AGCCTCCCGGACGACTAGGGCCGAGCACGCTCCGGCCGGAGCCAGCGCAGCTGCGGCTTT
CGGAGCCCGCGGGGCGGCGGACCCGCTTGCGGTGCAGATTCTTCCTAAGCCTTTGGTGAA
CACCCTGTGACGCGAGATGGCTGCAAACAAGCCCAAGGGCCAGAATTCCTTGGCCTTGCA
CAAGGTCATCATGGTGGGCAGCGGCGGCGTGGGCAAGTCCGCTCTGACTCTGCAGTTCAT
GTACGACGAGTTTGTGGAGGACTACGAGCCGACGAAGGCAGACAGCTATCGGAAGAAGGT
GGTGCTGGACGGGGAGGAGGTGCAGATCGACATCCTGGACACGGCGGGCCAGGAGGACTA
CGCGGCCATCAGAGACAACTACTTCCGCAGCGGCGAGGGCTTCCTCTGCGTCTTCTCCAT
CACGGAGCTGGAGTCCTTCGCGGCCACCGCCGACTTCAGGGAGCAGATTTTAAGAGTAAA
AGAAGATGAGAACGTTCCATTTCTGCTGGTTGGAAACAAATCAGATTTAGAAGATAAAAG
GCAGGTTTCTGTAGAAGAGGCCAAAACCAGAGCGGATCAGTGGAATGTTAACTACGTGGA
AACATCCGCTAAAACGCGAGCCAATGTCGACAAGGTGTTTTTTGATTTAATGAGGGAAAT
TCGAGCCCGAAAGATGGAAGACAGCAAAGAAAAGAATGGAAAAAAGAAGAGGAAAAGTTT
AGCCAAGAGAATCAGAGAAAGATGCTGCATTTTATAATCAAAGCCCAAACTCCTTTCTTA
TCTTGACCATATACTAATAAATATAATTTATAAGCTTTGCCATTGAAGGCTCAATTGACT
GAAATTACTTTAACATTTTGGAAATTGTTATGTATCTCTAAAAGCATGAATTGGAACTGC
ACTGAAAGTCAAATTCACTTAAAAAAGAAATTAATGTGGCTTCACCAAGAAGCAAAGTTC
AACTTATTTCATAATCGCCTACATGTATCACGGTCTGAATGTAGCGTGGGAGCTTGTGTT
TTGCCGGCAATCTTTCTTGAACTTACTCAGATGAGATCGGGGTGGGCAGTGGGAGGAAAG
GCCGCGTCCTCTGGTTTGTTATAAAGCTTAGATTTTATATCCTTTTAAACTGTCTTGGTC
TTCTACTGCCTTGAAAAATGACAGTTGTGAACATGATTGTTAAGCTGTACCACTTTTTAA
CCATTGTTATGCGAAATACAGAGACGCCGTTACTGGCATGATTGTTGCATACAGTTAAAT
CGAGAGTCATTCGTCTGTGAGCTTCCATTACTGGTGATTAACTTAGAAAAGTGGTGGCAA
CTTGTACATGGAAATGTTTTCTATGCCTTAATTTAGAAACCGAACATACCCGCTCGTCGT
TCTGGGTGTGTCCTCCCTGAGCCTGGCCCCGCTGCCCAGGTGTCCTGGAGAGGGACTAGA
GGTCCACGCAGAGTGGAGAACAACTTCTGTGTAGAAGACTCTCGAGAAATAACTGCTAGG
AGTCTGTCCAATTGAAACTGTGTGCCATACTCTGGTTCTCGAAAGGAAGGTTCCAGAGCG
CCTTGCTCGCTTTTAATTAACCCTAATGGAGTTGAAAAGGAAGGGCCAGCATTTGCTTGT
AGGATTCCGTACTAGTGTTTCAGTGAACCAACCCTCTTTCTCCAAGATGCTGGACCCTGC
AGATCCCTTTCGGCAAGTGGCCAGTGTGTGGGAAGTTTCTGACGCCCGGGAGCCGGGCGC
AGAGAAGCCAGAACCTTCGGGAACCGTGGTGCTGCCGCCCGTGAACGGCTCCGCTTGTGC
TCCTGGGGCTGCAGTTTGGCTGCACGGGAGGTGCCGGGCGTCCCTGTGGTCTGTGGCTGT
AATGAGGACCACAGCTGCACCCCCCAAGCTGTCCTCAAACCACCAAAGCCAAGCACAGCG
CAGACGGCGCGTGTGCCCCAGACGGTAGGCCCGGGCCGTGCGCTGCGCCGCTGGGGCCCA
CCGGCCACTCGAGAACCTAATCCAGGGGGAAACACGCCCCTGTCAGATTCCTCTCTGTCG
AATGAGCTGTCCTGGTTTCATCCCAGAGTGTTTCTTTTGGCTCCGTCCTAATTTCAACAA
GTCAAAGACGTGCTTGGCCTTCCAGGTAGCAGATGTGCATATGTGAAGCTCAACTAGGCT
CTTTAGGAACCGAACTCCTTAGATGCTGCGTCCAGCTTGTCATGCGGAACATTTGCCCTT
CAGGGGTCGAGGTGTACATCTTTCCCTTCCTGTTTCCATAGGCTGTGCTGTGTGCAGAAG
TAAACGTCCATGGAAGCCCGGCCCTCGGGCACAGCGCTCTCCGTGTGAACGCATCGCCGT
GTCCCTGAGCCGGGCCCAACCACTACCATTGTGACTCTGCTTTGAGGCCTTTCCTCTCCT
GGGTACCGAGGTGCTATGAAGCCAAACGACAAAGAAGCATCATGTGTCTTAGGCTGATGC
CACTACCCGATTGATTTCTTTGCAATTTGAGCCATTTAAAGACCAATAAACTTTCTCTTT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCGGCCAGGAGGAGGGTGGATCTCCTGAGAGCCGAGCGCCCCGAGTCCTCTTCCACCTCC
TCCTGCCGCCGGGCTCTGCCGCCGCCCGTCGGGCTCCACCTTCCGCCGCTCCTGGCGCAG
AGCCTCCCGGACGACTAGGGCCGAGCACGCTCCGGCCGGAGCCAGCGCAGCTGCGGCTTT
CGGAGCCCGCGGGGCGGCGGACCCGCTTGCGGTGCAGATTCTTCCTAAGCCTTTGGTGAA
CACCCTGTGACGCGAGATGGCTGCAAACAAGCCCAAGGGCCAGAATTCCTTGGCCTTGCA
CAAGGTCATCATGGTGGGCAGCGGCGGCGTGGGCAAGTCCGCTCTGACTCTGCAGTTCAT
GTACGACGAGTTTGTGGAGGACTACGAGCCGACGAAGGCAGACAGCTATCGGAAGAAGGT
GGTGCTGGACGGGGAGGAGGTGCAGATCGACATCCTGGACACGGCGGGCCAGGAGGACTA
CGCGGCCATCAGAGACAACTACTTCCGCAGCGGCGAGGGCTTCCTCTGCGTCTTCTCCAT
CACGGAGCTGGAGTCCTTCGCGGCCACCGCCGACTTCAGGGAGCAGATTTTAAGAGTAAA
AGAAGATGAGAACGTTCCATTTCTGCTGGTTGGAAACAAATCAGATTTAGAAGATAAAAG
GCAGGTTTCTGTAGAAGAGGCCAAAACCAGAGCGGATCAGTGGAATGTTAACTACGTGGA
AACATCCGCTAAAACGCGAGCCAATGTCGACAAGGTGTTTTTTGATTTAATGAGGGAAAT
TCGAGCCCGAAAGATGGAAGACAGCAAAGAAAAGAATGGAAAAAAGAAGAGGAAAAGTTT
AGCCAAGAGAATCAGAGAAAGATGCTGCATTTTATAATCAAAGCCCAAACTCCTTTCTTA
TCTTGACCATATACTAATAAATATAATTTATAAGCTTTGCCATTGAAGGCTCAATTGACT
GAAATTACTTTAACATTTTGGAAATTGTTATGTATCTCTAAAAGCATGAATTGGAACTGC
ACTGAAAGTCAAATTCACTTAAAAAAGAAATTAATGTGGCTTCACCAAGAAGCAAAGTTC
AACTTATTTCATAATCGCCTACATGTATCACGGTCTGAATGTAGCGTGGGAGCTTGTGTT
TTGCCGGCAATCTTTCTTGAACTTACTCAGATGAGATCGGGGTGGGCAGTGGGAGGAAAG
GCCGCGTCCTCTGGTTTGTTATAAAGCTTAGATTTTATATCCTTTTAAACTGTCTTGGTC
TTCTACTGCCTTGAAAAATGACAGTTGTGAACATGATTGTTAAGCTGTACCACTTTTTAA
CCATTGTTATGCGAAATACAGAGACGCCGTTACTGGCATGATTGTTGCATACAGTTAAAT
CGAGAGTCATTCGTCTGTGAGCTTCCATTACTGGTGATTAACTTAGAAAAGTGGTGGCAA
CTTGTACATGGAAATGTTTTCTATGCCTTAATTTAGAAACCGAACATACCCGCTCGTCGT
TCTGGGTGTGTCCTCCCTGAGCCTGGCCCCGCTGCCCAGGTGTCCTGGAGAGGGACTAGA
GGTCCACGCAGAGTGGAGAACAACTTCTGTGTAGAAGACTCTCGAGAAATAACTGCTAGG
AGTCTGTCCAATTGAAACTGTGTGCCATACTCTGGTTCTCGAAAGGAAGGTTCCAGAGCG
CCTTGCTCGCTTTTAATTAACCCTAATGGAGTTGAAAAGGAAGGGCCAGCATTTGCTTGT
AGGATTCCGTACTAGTGTTTCAGTGAACCAACCCTCTTTCTCCAAGATGCTGGACCCTGC
AGATCCCTTTCGGCAAGTGGCCAGTGTGTGGGAAGTTTCTGACGCCCGGGAGCCGGGCGC
AGAGAAGCCAGAACCTTCGGGAACCGTGGTGCTGCCGCCCGTGAACGGCTCCGCTTGTGC
TCCTGGGGCTGCAGTTTGGCTGCACGGGAGGTGCCGGGCGTCCCTGTGGTCTGTGGCTGT
AATGAGGACCACAGCTGCACCCCCCAAGCTGTCCTCAAACCACCAAAGCCAAGCACAGCG
CAGACGGCGCGTGTGCCCCAGACGGTAGGCCCGGGCCGTGCGCTGCGCCGCTGGGGCCCA
CCGGCCACTCGAGAACCTAATCCAGGGGGAAACACGCCCCTGTCAGATTCCTCTCTGTCG
AATGAGCTGTCCTGGTTTCATCCCAGAGTGTTTCTTTTGGCTCCGTCCTAATTTCAACAA
GTCAAAGACGTGCTTGGCCTTCCAGGTAGCAGATGTGCATATGTGAAGCTCAACTAGGCT
CTTTAGGAACCGAACTCCTTAGATGCTGCGTCCAGCTTGTCATGCGGAACATTTGCCCTT
CAGGGGTCGAGGTGTACATCTTTCCCTTCCTGTTTCCATAGGCTGTGCTGTGTGCAGAAG
TAAACGTCCATGGAAGCCCGGCCCTCGGGCACAGCGCTCTCCGTGTGAACGCATCGCCGT
GTCCCTGAGCCGGGCCCAACCACTACCATTGTGACTCTGCTTTGAGGCCTTTCCTCTCCT
GGGTACCGAGGTGCTATGAAGCCAAACGACAAAGAAGCATCATGTGTCTTAGGCTGATGC
CACTACCCGATTGATTTCTTTGCAATTTGAGCCATTTAAAGACCAATAAACTTTCTCTTT |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
col (0.390016) |
|
nlu (0.383362) |
|
vin (0.332557) |
|
mga (0.32041) |
|
csk (0.281492) |
|
che (0.272628) |
|
fce (0.271592) |
|
sug (0.254582) |
|
tra (0.246184) |
|
mgp (0.230681) |
|
cty (0.20816) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
nje (0.16592) |
|
cki (0.165235) |
|
cje (0.165235) |
|
nco (0.161734) |
|
csp (0.161186) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
cst (0.140036) |
|
ste (0.135208) |
|
pla (0.133672) |
|
ute (0.132784) |
|
ova (0.129132) |
|
thg (0.126791) |
|
ese (0.126502) |
|
bla (0.124347) |
|
eep (0.122564) |
|
eru (0.120048) |
|
clu (0.119646) |
|
spc (0.113366) |
|
ldo (0.0970026) |
|
col (0.390016) |
|
nlu (0.383362) |
|
vin (0.332557) |
|
mga (0.32041) |
|
csk (0.281492) |
|
che (0.272628) |
|
fce (0.271592) |
|
sug (0.254582) |
|
tra (0.246184) |
|
mgp (0.230681) |
|
cty (0.20816) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
nje (0.16592) |
|
cki (0.165235) |
|
cje (0.165235) |
|
nco (0.161734) |
|
csp (0.161186) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
cst (0.140036) |
|
ste (0.135208) |
|
pla (0.133672) |
|
ute (0.132784) |
|
ova (0.129132) |
|
thg (0.126791) |
|
ese (0.126502) |
|
bla (0.124347) |
|
eep (0.122564) |
|
eru (0.120048) |
|
clu (0.119646) |
|
spc (0.113366) |
|
ldo (0.0970026) |