Non-Coding RNA Search

Ss1.1-Pig4-TMW8032I06.5

Sequence:


               
               TAGACTTCAGGTGTTCTGGAGAGGAGGCAGTCTTACTGTAGCATCCAGCCATCCCCATTC
TGCTCTATTGTGGGAATGTCACGGTGCCCTCTTCTGGTGAGAAGGAGGTATTTTGCCAAT
TTTTCCCATTTTAGAAATGGAATATTTTTTACGTAAGCTTTTTTGCACTGTATGGTAGAT
GCTATGGAATGGATCCCAGAATTAATCTTTCTCATAAGACATCAGTTCTTACTGTTGAGG
AGCAATGACTTCTGAGGCTGAGAGATTTTAAAATTCAGCAACCCTTACCCTTTATTACAT
TTTTGGTCTCTCTAGCTGTTTCTTCTAGTGTCTGCCAGGGGCACTTGACCTTGAAATTCC
CAAGGGGTATGGAAATTATGGAAACCTGTTCCAGGAACCACTGTAGCCTGTGGTGGTGCT
TGGTACCGCAGGGCATTTTCTCTCCTGTTTGTTAAGTGTGTGCATGTTCATACAGGTATA
CTTTATGCGAATTTTTGTGTCTATCCTTAGCGGTATATCAGTATATCTACTGGGTCTCTA
GAGTTAAGTCTCTTCATGTGCAAATATGAAGTGTTTGAATTAGAAGCAAACCAAGCGAAA
ATAATTTTTCATTACCTACTCTAGACCTAGTGCTGGGTTAAGTAAACTGAAACAGCTGTT
GTTCTGAAAGTTGGCAGCACTAGAGAGCTGGGCTGGGATTGGAAAGGAATAATCTAGGCT
TTTCCCAAATCAATAGAAATAAACAAAACCCCCTTAATCATCTAGTTTCCTTGCTTCTTT
GGAGTTTTTTGTTATAATACCTTTCTTTCTGGCTACCCTGATTGACCCTAGGCTTCTGAC
TGACTCATTTTCCAAAATGATGGGACCCTCTCTTCCACTCATACCAACTAAGAGACCATA
TTCACGACCCCATTGATTTTAAAAGCCTTCAGTCCCTGTTCATGGGAATCTAAGAGGAAG
GGGAAGAAAGGAAAATGTGCTTCTTCTGCCTTCTTTTCCAGTTTGCCCAGTACTAGAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGACTTCAGGTGTTCTGGAGAGGAGGCAGTCTTACTGTAGCATCCAGCCATCCCCATTC
TGCTCTATTGTGGGAATGTCACGGTGCCCTCTTCTGGTGAGAAGGAGGTATTTTGCCAAT
TTTTCCCATTTTAGAAATGGAATATTTTTTACGTAAGCTTTTTTGCACTGTATGGTAGAT
GCTATGGAATGGATCCCAGAATTAATCTTTCTCATAAGACATCAGTTCTTACTGTTGAGG
AGCAATGACTTCTGAGGCTGAGAGATTTTAAAATTCAGCAACCCTTACCCTTTATTACAT
TTTTGGTCTCTCTAGCTGTTTCTTCTAGTGTCTGCCAGGGGCACTTGACCTTGAAATTCC
CAAGGGGTATGGAAATTATGGAAACCTGTTCCAGGAACCACTGTAGCCTGTGGTGGTGCT
TGGTACCGCAGGGCATTTTCTCTCCTGTTTGTTAAGTGTGTGCATGTTCATACAGGTATA
CTTTATGCGAATTTTTGTGTCTATCCTTAGCGGTATATCAGTATATCTACTGGGTCTCTA
GAGTTAAGTCTCTTCATGTGCAAATATGAAGTGTTTGAATTAGAAGCAAACCAAGCGAAA
ATAATTTTTCATTACCTACTCTAGACCTAGTGCTGGGTTAAGTAAACTGAAACAGCTGTT
GTTCTGAAAGTTGGCAGCACTAGAGAGCTGGGCTGGGATTGGAAAGGAATAATCTAGGCT
TTTCCCAAATCAATAGAAATAAACAAAACCCCCTTAATCATCTAGTTTCCTTGCTTCTTT
GGAGTTTTTTGTTATAATACCTTTCTTTCTGGCTACCCTGATTGACCCTAGGCTTCTGAC
TGACTCATTTTCCAAAATGATGGGACCCTCTCTTCCACTCATACCAACTAAGAGACCATA
TTCACGACCCCATTGATTTTAAAAGCCTTCAGTCCCTGTTCATGGGAATCTAAGAGGAAG
GGGAAGAAAGGAAAATGTGCTTCTTCTGCCTTCTTTTCCAGTTTGCCCAGTACTAGAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               413-526, + strand, RNAz p=0.519493

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               413-526, + strand, RNAz p=0.519493

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-254, gnl|bosTau2|chr5 (32428310-32428563)
               

               
               3-254, gnl|Hg17|chr12 (55944996-55943802)
               

               
               3-254, gnl|Mm7|chr10 (126989953-126990202)
               


               
               255-1020, gnl|bosTau2|chr5 (32428595-32429362)
               

               
               255-1020, gnl|Hg17|chr12 (55943499-55942750)
               

               
               255-1020, gnl|Mm7|chr10 (126990238-126990906)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-254, gnl|bosTau2|chr5 (32428310-32428563)
               

               
               3-254, gnl|Hg17|chr12 (55944996-55943802)
               

               
               3-254, gnl|Mm7|chr10 (126989953-126990202)
               


               
               255-1020, gnl|bosTau2|chr5 (32428595-32429362)
               

               
               255-1020, gnl|Hg17|chr12 (55943499-55942750)
               

               
               255-1020, gnl|Mm7|chr10 (126990238-126990906)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	3-254, gnl\|bosTau2\|chr5 (32428310-32428563)
	3-254, gnl\|Hg17\|chr12 (55944996-55943802)
	3-254, gnl\|Mm7\|chr10 (126989953-126990202)

	255-1020, gnl\|bosTau2\|chr5 (32428595-32429362)
	255-1020, gnl\|Hg17\|chr12 (55943499-55942750)
	255-1020, gnl\|Mm7\|chr10 (126990238-126990906)