Non-Coding RNA Search

Ss1.1-Pig4-TMW8032I12.5

Sequence:


               
               AATGACAAAAAAAAAAAAAAAAATTAGGAAAACAATACACACTATGATTTTCCTAATTAG
GAAATCCATACATTTAGAATCTACTAGAGTACACGGGGTTCTCTGTTAATTAATGATAAT
TCCATCCCACTGTTAACATGACTTGTATGTGGAAGGGAGAATGGGACTTGTTAGAAGTTA
TAGAAAGTAAAATTAAATATCCCTTTGGTAACAATTTCTCATGTAACTGTTAAAATATTA
TGGTTTGAGAAATGGTAAGATTATAAAGGCATTGCACAGTGGTTGATCAGTTTGCATTTT
GTCATTTTTTTTTTTGTTCTCCTACAAGTTTATTTTAGCCTGATGGTTATAGCTACGACA
AACTGAACCCTGCAATATTATCGAGAGAGAGCTTGGATATTTTAAGTATCTCCTGTATTT
TTCATGTCAGCTTCTTGTATTTTAATGTTTATCTGAAAAGTAACTTTTAAATTATTTTGC
ATATTTTCAAAGTTAGAAAAGCATGTTTATCTTAGACATCAAAACCAAATTATTCCAAGA
GCACGCTGCACATCACAGTGTGACTGCTTCTCGATCTACCTACACAGGATGCCATTTTGG
GCACAGTAGTTGTTAAATATAGATCACTATGTGACATAATTATGCTGGGTTTCATTAGTA
TGCAATATTTTATTACTCACCTTCTTAAAAATTTTGTTTCTTTTTAAAGAGTATAATTTA
TAGCTGATTTTTAAATAATATGCGATTTAATATAGCTAACCAAAATCTTTTTAATTCAAA
GAACTTTGTAATTACTTGGAGGATAAGATCATTTTACTGTGGAATGTGATATTCTCAGTA
AATACAATAAAAATTTTTAGCAAATTTCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGACAAAAAAAAAAAAAAAAATTAGGAAAACAATACACACTATGATTTTCCTAATTAG
GAAATCCATACATTTAGAATCTACTAGAGTACACGGGGTTCTCTGTTAATTAATGATAAT
TCCATCCCACTGTTAACATGACTTGTATGTGGAAGGGAGAATGGGACTTGTTAGAAGTTA
TAGAAAGTAAAATTAAATATCCCTTTGGTAACAATTTCTCATGTAACTGTTAAAATATTA
TGGTTTGAGAAATGGTAAGATTATAAAGGCATTGCACAGTGGTTGATCAGTTTGCATTTT
GTCATTTTTTTTTTTGTTCTCCTACAAGTTTATTTTAGCCTGATGGTTATAGCTACGACA
AACTGAACCCTGCAATATTATCGAGAGAGAGCTTGGATATTTTAAGTATCTCCTGTATTT
TTCATGTCAGCTTCTTGTATTTTAATGTTTATCTGAAAAGTAACTTTTAAATTATTTTGC
ATATTTTCAAAGTTAGAAAAGCATGTTTATCTTAGACATCAAAACCAAATTATTCCAAGA
GCACGCTGCACATCACAGTGTGACTGCTTCTCGATCTACCTACACAGGATGCCATTTTGG
GCACAGTAGTTGTTAAATATAGATCACTATGTGACATAATTATGCTGGGTTTCATTAGTA
TGCAATATTTTATTACTCACCTTCTTAAAAATTTTGTTTCTTTTTAAAGAGTATAATTTA
TAGCTGATTTTTAAATAATATGCGATTTAATATAGCTAACCAAAATCTTTTTAATTCAAA
GAACTTTGTAATTACTTGGAGGATAAGATCATTTTACTGTGGAATGTGATATTCTCAGTA
AATACAATAAAAATTTTTAGCAAATTTCAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               559-674, + strand, RNAz p=0.769764

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               559-674, + strand, RNAz p=0.769764

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               41-173, gnl|bosTau2|chr9 (20356043-20355914)
               


               
               175-873, gnl|bosTau2|chr9 (20355698-20355015)
               

               
               175-873, gnl|Hg17|chr6 (111658406-111659095)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-173, gnl|bosTau2|chr9 (20356043-20355914)
               


               
               175-873, gnl|bosTau2|chr9 (20355698-20355015)
               

               
               175-873, gnl|Hg17|chr6 (111658406-111659095)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               isp (0.75188)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.75188)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

	41-173, gnl\|bosTau2\|chr9 (20356043-20355914)

	175-873, gnl\|bosTau2\|chr9 (20355698-20355015)
	175-873, gnl\|Hg17\|chr6 (111658406-111659095)

	isp (0.75188)
	fat (0.147427)
	lyg (0.133103)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)