Ss1.1-Pig4-TMW8032I16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTATGGCAGTGAATTTCCTTTAATCAAAAACAAGCATGACAAATTCATCAA CTATCAAAAGCTACATTTTACTTAAAAACAGTCTTTAAAAATGTTTAATCATACAATATA TACAATACATGCTGCTTTCCTTTTTGGATTTCAGTATCCACTTGAGTCCTTCAGCTGACG CCAAGCACTCAGCCTCTATCGGCTCTGCCCTGAAGTAATCACAGCCTCCGAGATCTCAAA TGTCTTCACAATCTCCTCCCACTCGCGGTAACTCAAAGCTATGACTGCTTGATTCCGAAT TTGAGTGTTTTGGTCAATTCCATCACTTTCGTTAATATTAACAGGCTCTATTACTGGTAG TCGATCTTGGTCAAGTCGTATTCTTGCAAAGCCATCCCTGATGATAAAAGAGACATGAAA GATGTTTTCCACTGTGCGGGGGAAGGAATGTGGATCAACCACAAAGTCAAAGAAGGACAT GGGCGTATCGGGATCTTCCTGAAAGTATGTTTGCAACAATCCCAAGATCCTTTCTACTTC TTTTTCTGTTGCTTCTTGATGAGATTGTTCCATTCTTTTTAACTCGGCAGGCATTGCCTG CTTCTCTTCTATCATACGAGCTTTCTTTGGGCGATCGATTCGTGGCTTTGGCACAGGGCC CTCTCCTTGGATTGAACCCAACAGAAAGTGGAATGTATGGGTTTTATTAAAGGTGTTTTC TGCTGTTTTGCCTGATATTTTCCAGGAGTCATAGACTATGAATTCAAAGTCAGAACTGTC TTCATCACGGACGAGTTCTTCAGCTTCTAGCGGATTTACTCCCATATGTGTCAGTAGAGT TTCAACATATCTTAACATATCAAACGAGTTCAGATCAGAACGCAGCTGCTTGGCCTTCTC TTTGCCCAAATCTGAAGCCAGGACAAGAAAATGGGCATCTAGGACTGCTTCTCTTGCTCG GGACACTCCATTAAACAGAGTGTTGGCTTCTTCAAGGACCTGTGTTAACTTGTCACTGGC ATTCAGTATATCCTCCCGGTTTTGTTGGACCGAGTTGATGAGCGCCCGGTACTGATGGCG GATCTGGCGGCACAGGCCGTGGTCGGTCTCGGCCTCCAAGCTCGCCGGGTCCATCAGCTC ATCCCCGGAATCCGACGGCTCCGTCTCCTCCAAGCTCGGGCGCTCCGGGGCCTCCCTGCG CTCGGGCGCGGCGCCGCGGCGGGACACAGGCGACAGCGGGGACCGCGAGCGGGAGCGGGT GCGATCCCGGTGCGGGTCGCGGCCCCGGCCCCGGCCCTCGGACCGGCGGCCGCTGCTGTC TCCGGACATCGCGCCGAGCTGCCCTGCAACTTCGGGACGGCGGAAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTATGGCAGTGAATTTCCTTTAATCAAAAACAAGCATGACAAATTCATCAA CTATCAAAAGCTACATTTTACTTAAAAACAGTCTTTAAAAATGTTTAATCATACAATATA TACAATACATGCTGCTTTCCTTTTTGGATTTCAGTATCCACTTGAGTCCTTCAGCTGACG CCAAGCACTCAGCCTCTATCGGCTCTGCCCTGAAGTAATCACAGCCTCCGAGATCTCAAA TGTCTTCACAATCTCCTCCCACTCGCGGTAACTCAAAGCTATGACTGCTTGATTCCGAAT TTGAGTGTTTTGGTCAATTCCATCACTTTCGTTAATATTAACAGGCTCTATTACTGGTAG TCGATCTTGGTCAAGTCGTATTCTTGCAAAGCCATCCCTGATGATAAAAGAGACATGAAA GATGTTTTCCACTGTGCGGGGGAAGGAATGTGGATCAACCACAAAGTCAAAGAAGGACAT GGGCGTATCGGGATCTTCCTGAAAGTATGTTTGCAACAATCCCAAGATCCTTTCTACTTC TTTTTCTGTTGCTTCTTGATGAGATTGTTCCATTCTTTTTAACTCGGCAGGCATTGCCTG CTTCTCTTCTATCATACGAGCTTTCTTTGGGCGATCGATTCGTGGCTTTGGCACAGGGCC CTCTCCTTGGATTGAACCCAACAGAAAGTGGAATGTATGGGTTTTATTAAAGGTGTTTTC TGCTGTTTTGCCTGATATTTTCCAGGAGTCATAGACTATGAATTCAAAGTCAGAACTGTC TTCATCACGGACGAGTTCTTCAGCTTCTAGCGGATTTACTCCCATATGTGTCAGTAGAGT TTCAACATATCTTAACATATCAAACGAGTTCAGATCAGAACGCAGCTGCTTGGCCTTCTC TTTGCCCAAATCTGAAGCCAGGACAAGAAAATGGGCATCTAGGACTGCTTCTCTTGCTCG GGACACTCCATTAAACAGAGTGTTGGCTTCTTCAAGGACCTGTGTTAACTTGTCACTGGC ATTCAGTATATCCTCCCGGTTTTGTTGGACCGAGTTGATGAGCGCCCGGTACTGATGGCG GATCTGGCGGCACAGGCCGTGGTCGGTCTCGGCCTCCAAGCTCGCCGGGTCCATCAGCTC ATCCCCGGAATCCGACGGCTCCGTCTCCTCCAAGCTCGGGCGCTCCGGGGCCTCCCTGCG CTCGGGCGCGGCGCCGCGGCGGGACACAGGCGACAGCGGGGACCGCGAGCGGGAGCGGGT GCGATCCCGGTGCGGGTCGCGGCCCCGGCCCCGGCCCTCGGACCGGCGGCCGCTGCTGTC TCCGGACATCGCGCCGAGCTGCCCTGCAACTTCGGGACGGCGGAAGTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 11-170, gnl|bosTau2|chr26 (28502620-28502458) | |
| 11-170, gnl|Hg17|chr10 (123706604-123706766) | |
| 11-170, gnl|Mm7|chr7 (126697875-126698039) | |
| 646-808, gnl|bosTau2|chr11 (49059161-49059320) | |
| 646-808, gnl|canFam2|chr10 (71187836-71187962) | |
| 646-808, gnl|dasNov1|scaffold_101992 (576-441) | |
| 646-808, gnl|echTel1|scaffold_162612 (4172-4045) | |
| 646-808, gnl|hg17|chr2 (69410403-69410558) | |
| 646-808, gnl|Hg17|chr2 (69410587-69410403) | |
| 646-808, gnl|loxAfr1|scaffold_103317 (1449-1573) | |
| 646-808, gnl|mm7|chr6 (87197819-87197695) | |
| 646-808, gnl|Mm7|chr6 (87197601-87197817) | |
| 646-808, gnl|oryCun1|scaffold_192097 (39215-39082) | |
| 646-808, gnl|panTro1|chr12 (71644981-71645136) | |
| 646-808, gnl|rheMac2|chr13 (69506258-69506412) | |
| 646-808, gnl|rn3|chr4 (121530706-121530593) | |
| 835-967, gnl|bosTau2|chr26 (28492611-28492479) | |
| 835-967, gnl|canFam2|chr30 (3790576-3790391) | |
| 835-967, gnl|dasNov1|scaffold_48735 (51612-51798) | |
| 835-967, gnl|Hg17|chr10 (123720444-123720576) | |
| 835-967, gnl|hg17|chr15 (32381365-32381536) | |
| 835-967, gnl|loxAfr1|scaffold_103317 (1242-1422) | |
| 835-967, gnl|Mm7|chr7 (126708025-126708157) | |
| 835-967, gnl|panTro1|chr16 (32028156-32028328) | |
| 835-967, gnl|rheMac2|chr7 (12545825-12546002) | |
| 1044-1368, gnl|bosTau2|chr26 (28489123-28488793) | |
| 1044-1368, gnl|Hg17|chr10 (123724379-123724709) | |
| 1044-1368, gnl|Mm7|chr7 (126712337-126712658) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-170, gnl|bosTau2|chr26 (28502620-28502458) | |
| 11-170, gnl|Hg17|chr10 (123706604-123706766) | |
| 11-170, gnl|Mm7|chr7 (126697875-126698039) | |
| 646-808, gnl|bosTau2|chr11 (49059161-49059320) | |
| 646-808, gnl|canFam2|chr10 (71187836-71187962) | |
| 646-808, gnl|dasNov1|scaffold_101992 (576-441) | |
| 646-808, gnl|echTel1|scaffold_162612 (4172-4045) | |
| 646-808, gnl|hg17|chr2 (69410403-69410558) | |
| 646-808, gnl|Hg17|chr2 (69410587-69410403) | |
| 646-808, gnl|loxAfr1|scaffold_103317 (1449-1573) | |
| 646-808, gnl|mm7|chr6 (87197819-87197695) | |
| 646-808, gnl|Mm7|chr6 (87197601-87197817) | |
| 646-808, gnl|oryCun1|scaffold_192097 (39215-39082) | |
| 646-808, gnl|panTro1|chr12 (71644981-71645136) | |
| 646-808, gnl|rheMac2|chr13 (69506258-69506412) | |
| 646-808, gnl|rn3|chr4 (121530706-121530593) | |
| 835-967, gnl|bosTau2|chr26 (28492611-28492479) | |
| 835-967, gnl|canFam2|chr30 (3790576-3790391) | |
| 835-967, gnl|dasNov1|scaffold_48735 (51612-51798) | |
| 835-967, gnl|Hg17|chr10 (123720444-123720576) | |
| 835-967, gnl|hg17|chr15 (32381365-32381536) | |
| 835-967, gnl|loxAfr1|scaffold_103317 (1242-1422) | |
| 835-967, gnl|Mm7|chr7 (126708025-126708157) | |
| 835-967, gnl|panTro1|chr16 (32028156-32028328) | |
| 835-967, gnl|rheMac2|chr7 (12545825-12546002) | |
| 1044-1368, gnl|bosTau2|chr26 (28489123-28488793) | |
| 1044-1368, gnl|Hg17|chr10 (123724379-123724709) | |
| 1044-1368, gnl|Mm7|chr7 (126712337-126712658) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| cte (1.17096) | |
| sto (0.719295) | |
| cmu (0.55918) | |
| lin (0.436808) | |
| spl (0.429553) | |
| amn (0.417711) | |
| vin (0.332557) | |
| liv (0.292569) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fhi (0.169578) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (1.17096) | |
| sto (0.719295) | |
| cmu (0.55918) | |
| lin (0.436808) | |
| spl (0.429553) | |
| amn (0.417711) | |
| vin (0.332557) | |
| liv (0.292569) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fhi (0.169578) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| jej (0.0989218) |