Non-Coding RNA Search

Ss1.1-Pig4-TMW8032I21.3

Sequence:


               
               CCTGTACATCAAGAACGGCCAGGGTTTCATCCTCGTCTACAGCCTCGTTAACCAGCAGAG
CTTCCAGGACATCAAGCCTATGCGGGACCAGATCATCCGCGTAAAGCGGTACGAGAGAGT
GCCCATGATCCTGGTGGGCAACAAGGTGGACTTGGAGGGCGAGCGCGAGGTCTCTTACGG
CGAGGGCAAGGCCCTGGCCGAGGAGTGGAGCTGCCCCTTCATGGAGACATCGGCCAAAAA
CAAAGCCTCGGTGGACGAGCTGTTTGCCGAGATCGTGCGGCAGATGAACTACGCGGCGCA
GCCCAACGGAGACGAGGGCTGCTGCTCGGCCTGCGTGATCCTCTGAGGCGCCCGCGGCTG
CCGCGCGCCGGCCGAGCTCTGCGCACAAAAGCCAAACGCACCCGACTCTAAATGTGATTT
CTCTTCTTGCTTTGAGATTGGAGACGACTTTGCATCGGCCGGGGTGTCCCGGGAGCCCGG
CTGGCCCCCGTGGCCATGTCCCCTGCCTCTGCCCCGTGTCCGAGGGGGTGTGCCGTTCTG
ACCATCCGAGACCCGATGGAAATGTGGCTCTTTGCGGCATGTACGTTTCTCATTGATTTT
GGTTGACGCGTTATTTCCCCATTGACGCAGCCGTTGGGGCGCTGTATTGGCAGCTTGACA
CCGGCAAGCGAAAGTTTCAGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTACATCAAGAACGGCCAGGGTTTCATCCTCGTCTACAGCCTCGTTAACCAGCAGAG
CTTCCAGGACATCAAGCCTATGCGGGACCAGATCATCCGCGTAAAGCGGTACGAGAGAGT
GCCCATGATCCTGGTGGGCAACAAGGTGGACTTGGAGGGCGAGCGCGAGGTCTCTTACGG
CGAGGGCAAGGCCCTGGCCGAGGAGTGGAGCTGCCCCTTCATGGAGACATCGGCCAAAAA
CAAAGCCTCGGTGGACGAGCTGTTTGCCGAGATCGTGCGGCAGATGAACTACGCGGCGCA
GCCCAACGGAGACGAGGGCTGCTGCTCGGCCTGCGTGATCCTCTGAGGCGCCCGCGGCTG
CCGCGCGCCGGCCGAGCTCTGCGCACAAAAGCCAAACGCACCCGACTCTAAATGTGATTT
CTCTTCTTGCTTTGAGATTGGAGACGACTTTGCATCGGCCGGGGTGTCCCGGGAGCCCGG
CTGGCCCCCGTGGCCATGTCCCCTGCCTCTGCCCCGTGTCCGAGGGGGTGTGCCGTTCTG
ACCATCCGAGACCCGATGGAAATGTGGCTCTTTGCGGCATGTACGTTTCTCATTGATTTT
GGTTGACGCGTTATTTCCCCATTGACGCAGCCGTTGGGGCGCTGTATTGGCAGCTTGACA
CCGGCAAGCGAAAGTTTCAGCCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34881637|ref|XP_228674.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34881637|ref|XP_228674.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-279, + strand, RNAz p=0.928348

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-279, + strand, RNAz p=0.928348

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-684, gnl|bosTau2|chr1 (72315509-72316193)
               

               
               1-684, gnl|Hg17|chr3 (154363387-154364067)
               

               
               1-684, gnl|Mm7|chr3 (61521799-61522486)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr1 (72315509-72316193)
               

               
               1-684, gnl|Hg17|chr3 (154363387-154364067)
               

               
               1-684, gnl|Mm7|chr3 (61521799-61522486)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               ese (0.126502)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               ese (0.126502)

	1-684, gnl\|bosTau2\|chr1 (72315509-72316193)
	1-684, gnl\|Hg17\|chr3 (154363387-154364067)
	1-684, gnl\|Mm7\|chr3 (61521799-61522486)