Non-Coding RNA Search

Ss1.1-Pig4-TMW8032J06.3

Sequence:


               
               ATGTAAACAGTCCCCGCCGGGAGGAGCCCCGGGAGCGGAGGGAACCCGCGCCGCCCGGCC
CCGCCGCCTGCCCCAGAGCCCGAGGAGCCGCGCGCTGCCCGCCCGGGAGGAGGGCGCCCG
AGAAGAGGAGGGCGGGCGGCGGAGGGAGCGGGAGGCGGGTGGCGCGCGAGGAGGCTGAGG
GAGCGGCGGGCGCGGCGGGCCAGGATGGATTTCCAGCAGCTGGCTGACGTTGCGGAGAAA
TGGTGCTCCAACACGCCCTTCGAGCTCATCGCCACCGAAGAGACCGAGCGCAGGATGGAT
TTCTACGCAGACCCCGGCGTCTCCTTCTACGTGCTGTGTCCGGATAACGGCTGCGGGGAC
AATTTTCACGTGTGGAGTGAGAGCGAGGACTGCCTGCCTTTTTTGCAGCTAGCACAGGAT
TACATCTCCTCCTGCGGCAAGAAGACGCTCCATGAAGTCTTGGAAAAAGTCTTCAAGTCT
TTCAGACCTTTACTGGGGCTTCCAGATGCAGATGACGACGCGTTTGAAGAATACAGTGCA
GATGTGGAAGAGGAGGAGCCAGAGGCCGACCACCCCCAAATGGGGGTCAGTCAGCAGTAG
ACTTCCAAGGGCTCCCACCTGAGAAGGAGCGTGAGCCCCGTGGTACCCGAGGGGGGTTTA
CAAGCTCCTGGGTTAGCATTTTGCATTAGCACTTCGAAACAGGACGGCTGACTCCCAGCA
TCCAAATTAAAAATGAAATACCTTTTTAATGACCACAAAATATCTGGGATGAGCTTTGCT
CAGAAGTGACCTGAATTTTACTCCCATTTCGGTGGGTCTCTGTGGAGTTGTCTTGTTAGC
CTTTGCCGTTTTGAATTTGGAGTCCGTCTTGTGGCTGACTGTTCTCTCTTGGGTTTATGT
TGGAGAGCTAACATTTGCTGACTCGACTGTCGAGAACTCTGAATGTATTAAGGATGTGTT
TTGAGTCATCGCAGGTGACATTATCGAGGGAAAGCATGGCAGAGAAGAAATGCAGTCTGC
ACTTTTTATGTACCTTTTAAGTGTATGTAAGTGGAAGGTTTGCTTATAAAGCATGAGTTT
TAATACCTAGTCATTAAACTGCACAAGTACAAATACAAGGGCAGAAAAAAAGAATTACTT
AGTTTTGGATTAAGAGGGTAAGAGAGGCAAAGGAGCCTTCGTTTAAGTGTTCTGCCATTA
CTAAGGTACCTGGATATATAGCAGCTGGTTCATGGTTAGGTATAAACATGACTTGCATGT
TCGATTATTTTAAAACATGCTGATTCCAAAGCCACTTTTAAAGGCTAATAGTGGAGAATA
TAAATGGGGTGACGTAAATCATTGACTTTAAAATGTTTCTAAGCCACCCCACCTATGAAA
TGAAACATTGACCTTCTCTCTTTATAACAAGATGGCAACTTGTTAAATCACGAAAACATC
CCAAATCCAAGTGCCACTTAAACTTTGAAGCCATAGATAAATTTAAAGGGGAAAATAAAC
CAGGATTAAAAAAAATGTTTTTTAGATATGATGGAATCCTTCTTTACTTTCTTAATCTAT
CTTTTATTCCTTAAAAAAAAAGTCAAGAAAATGATCCCACTGTGTAATTTATTAAACAAT
TGTAAGTGCTTTAAGGAACCTAATTGCAGTGAAGTTTTAAAGTGGTGTGAAGGTAGGGGG
TCTTTGAATCCTGGGTTAGCTTGGTTCAGAGGGGACGTTTTAATGATCAATATCCTCCGA
CAACTAACTGGAAACACTGCTGGCATCATTTAGCAGCAGAGACGTGGCGGGGGTGGGGGG
GGGATACTTTGTAACACTAACGTGGAATTATTTAAAACATTCATTTTTCTTAGATCCTTC
TACATCTCTGGTTCAAATAACATAGGATGCAGATTGCCTCTTTTACAACACTCGACTCAA
CATAACATCTGGGATGGACCTGTTTTTAACATGCATACACGTGCCTGCGGGGGCGTCAAA
GTTTTGGATGGAAAAAAAAAAAAAAAAAAAAGCAGCAGCAGCAGAGGCCACGGAGCTGAT
GGGAGCCTTGTATATCTTCCAGGCATGTCGATGTCAACCTGATTATCTCAACATTTTCTG
TTTAATTGATTGGTGCTGTGAGGCGCACAGCTGCTCGTGGTAAAACGGGGTCCTGCAGTG
TTCAGTCATTGGGTAAAATAATATAGTGGTTTCCATCTGTGCTTCAGTTACCACGTTTGT
TTTTCTTCTTGGAAAAACCTATTAAAGGTTAACTTCAAGTGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTAAACAGTCCCCGCCGGGAGGAGCCCCGGGAGCGGAGGGAACCCGCGCCGCCCGGCC
CCGCCGCCTGCCCCAGAGCCCGAGGAGCCGCGCGCTGCCCGCCCGGGAGGAGGGCGCCCG
AGAAGAGGAGGGCGGGCGGCGGAGGGAGCGGGAGGCGGGTGGCGCGCGAGGAGGCTGAGG
GAGCGGCGGGCGCGGCGGGCCAGGATGGATTTCCAGCAGCTGGCTGACGTTGCGGAGAAA
TGGTGCTCCAACACGCCCTTCGAGCTCATCGCCACCGAAGAGACCGAGCGCAGGATGGAT
TTCTACGCAGACCCCGGCGTCTCCTTCTACGTGCTGTGTCCGGATAACGGCTGCGGGGAC
AATTTTCACGTGTGGAGTGAGAGCGAGGACTGCCTGCCTTTTTTGCAGCTAGCACAGGAT
TACATCTCCTCCTGCGGCAAGAAGACGCTCCATGAAGTCTTGGAAAAAGTCTTCAAGTCT
TTCAGACCTTTACTGGGGCTTCCAGATGCAGATGACGACGCGTTTGAAGAATACAGTGCA
GATGTGGAAGAGGAGGAGCCAGAGGCCGACCACCCCCAAATGGGGGTCAGTCAGCAGTAG
ACTTCCAAGGGCTCCCACCTGAGAAGGAGCGTGAGCCCCGTGGTACCCGAGGGGGGTTTA
CAAGCTCCTGGGTTAGCATTTTGCATTAGCACTTCGAAACAGGACGGCTGACTCCCAGCA
TCCAAATTAAAAATGAAATACCTTTTTAATGACCACAAAATATCTGGGATGAGCTTTGCT
CAGAAGTGACCTGAATTTTACTCCCATTTCGGTGGGTCTCTGTGGAGTTGTCTTGTTAGC
CTTTGCCGTTTTGAATTTGGAGTCCGTCTTGTGGCTGACTGTTCTCTCTTGGGTTTATGT
TGGAGAGCTAACATTTGCTGACTCGACTGTCGAGAACTCTGAATGTATTAAGGATGTGTT
TTGAGTCATCGCAGGTGACATTATCGAGGGAAAGCATGGCAGAGAAGAAATGCAGTCTGC
ACTTTTTATGTACCTTTTAAGTGTATGTAAGTGGAAGGTTTGCTTATAAAGCATGAGTTT
TAATACCTAGTCATTAAACTGCACAAGTACAAATACAAGGGCAGAAAAAAAGAATTACTT
AGTTTTGGATTAAGAGGGTAAGAGAGGCAAAGGAGCCTTCGTTTAAGTGTTCTGCCATTA
CTAAGGTACCTGGATATATAGCAGCTGGTTCATGGTTAGGTATAAACATGACTTGCATGT
TCGATTATTTTAAAACATGCTGATTCCAAAGCCACTTTTAAAGGCTAATAGTGGAGAATA
TAAATGGGGTGACGTAAATCATTGACTTTAAAATGTTTCTAAGCCACCCCACCTATGAAA
TGAAACATTGACCTTCTCTCTTTATAACAAGATGGCAACTTGTTAAATCACGAAAACATC
CCAAATCCAAGTGCCACTTAAACTTTGAAGCCATAGATAAATTTAAAGGGGAAAATAAAC
CAGGATTAAAAAAAATGTTTTTTAGATATGATGGAATCCTTCTTTACTTTCTTAATCTAT
CTTTTATTCCTTAAAAAAAAAGTCAAGAAAATGATCCCACTGTGTAATTTATTAAACAAT
TGTAAGTGCTTTAAGGAACCTAATTGCAGTGAAGTTTTAAAGTGGTGTGAAGGTAGGGGG
TCTTTGAATCCTGGGTTAGCTTGGTTCAGAGGGGACGTTTTAATGATCAATATCCTCCGA
CAACTAACTGGAAACACTGCTGGCATCATTTAGCAGCAGAGACGTGGCGGGGGTGGGGGG
GGGATACTTTGTAACACTAACGTGGAATTATTTAAAACATTCATTTTTCTTAGATCCTTC
TACATCTCTGGTTCAAATAACATAGGATGCAGATTGCCTCTTTTACAACACTCGACTCAA
CATAACATCTGGGATGGACCTGTTTTTAACATGCATACACGTGCCTGCGGGGGCGTCAAA
GTTTTGGATGGAAAAAAAAAAAAAAAAAAAAGCAGCAGCAGCAGAGGCCACGGAGCTGAT
GGGAGCCTTGTATATCTTCCAGGCATGTCGATGTCAACCTGATTATCTCAACATTTTCTG
TTTAATTGATTGGTGCTGTGAGGCGCACAGCTGCTCGTGGTAAAACGGGGTCCTGCAGTG
TTCAGTCATTGGGTAAAATAATATAGTGGTTTCCATCTGTGCTTCAGTTACCACGTTTGT
TTTTCTTCTTGGAAAAACCTATTAAAGGTTAACTTCAAGTGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21758884|dbj|BAC05408.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21758884|dbj|BAC05408.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               529-672, - strand, RNAz p=0.955739
               

               
               1066-1184, - strand, RNAz p=0.893829

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               529-672, - strand, RNAz p=0.955739
               

               
               1066-1184, - strand, RNAz p=0.893829

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-366, gnl|bosTau2|chr4 (36782066-36781711)
               

               
               1-366, gnl|Hg17|chr7 (29947854-29948154)
               


               
               490-2264, gnl|bosTau2|chr4 (36754457-36752693)
               

               
               490-2264, gnl|Hg17|chr7 (29970294-29972046)
               

               
               490-2264, gnl|Mm7|chr6 (54662350-54664027)
               


               
               1165-1428, gnl|bosTau2|chr21 (25685465-25685213)
               

               
               1165-1428, gnl|Hg17|chr7 (29970966-29971201)
               

               
               1165-1428, gnl|Mm7|chr6 (54663049-54663272)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-366, gnl|bosTau2|chr4 (36782066-36781711)
               

               
               1-366, gnl|Hg17|chr7 (29947854-29948154)
               


               
               490-2264, gnl|bosTau2|chr4 (36754457-36752693)
               

               
               490-2264, gnl|Hg17|chr7 (29970294-29972046)
               

               
               490-2264, gnl|Mm7|chr6 (54662350-54664027)
               


               
               1165-1428, gnl|bosTau2|chr21 (25685465-25685213)
               

               
               1165-1428, gnl|Hg17|chr7 (29970966-29971201)
               

               
               1165-1428, gnl|Mm7|chr6 (54663049-54663272)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

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               sag (0.730861)
               

               
               fco (0.471624)
               

               
               med (0.348756)
               

               
               ecc (0.345105)
               

               
               sme (0.305437)
               

               
               hyp (0.285673)
               

               
               nmm (0.265604)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               eru (0.120048)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.730861)
               

               
               fco (0.471624)
               

               
               med (0.348756)
               

               
               ecc (0.345105)
               

               
               sme (0.305437)
               

               
               hyp (0.285673)
               

               
               nmm (0.265604)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               eru (0.120048)

	529-672, - strand, RNAz p=0.955739
	1066-1184, - strand, RNAz p=0.893829

	1-366, gnl\|bosTau2\|chr4 (36782066-36781711)
	1-366, gnl\|Hg17\|chr7 (29947854-29948154)

	490-2264, gnl\|bosTau2\|chr4 (36754457-36752693)
	490-2264, gnl\|Hg17\|chr7 (29970294-29972046)
	490-2264, gnl\|Mm7\|chr6 (54662350-54664027)

	1165-1428, gnl\|bosTau2\|chr21 (25685465-25685213)
	1165-1428, gnl\|Hg17\|chr7 (29970966-29971201)
	1165-1428, gnl\|Mm7\|chr6 (54663049-54663272)

	sag (0.730861)
	fco (0.471624)
	med (0.348756)
	ecc (0.345105)
	sme (0.305437)
	hyp (0.285673)
	nmm (0.265604)
	cbe (0.239234)
	ece (0.229305)
	spc (0.226732)
	fcc (0.197785)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	mga (0.160205)
	tbr (0.154178)
	lun (0.150489)
	fat (0.147427)
	pty (0.142714)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	eru (0.120048)