Non-Coding RNA Search

Ss1.1-Pig4-TMW8032J16.3

Sequence:


               
               CAGAACATGAAACTCAGCCTTCCAAGTGTGAGAAAGTTGCTTTGGATTCACAAAAGCCTT
CATCTTCTGTAAAAGAAGATGGAGATAGTATTTTTATCTCTTTAGGTGAAAGTAACTGTG
AGGACGTTACATTGATAGCTCCAGAAGATAATCCTGTAGAAGATAGACATTCTCTTCCTT
CAGAATCTGTGTGTTCTTCAATGAGAGATTCTCACCCTGAGTCCCAAAATACTACTGATA
AATCTGCTAGCGACAACTCAGCAGAGATAGATGCATCAAATATTGTCTCTCTCAAAATCA
TCATCAGTGATGATCCATTTGTTTCCTCAGATAATGAACTTAACAGTGCTGTTTCCAGTA
TCAGTGGAGAAAACTTGCCAACTATAATTTTATCTTCTCCTGCAAAATCACCTTCCAGAA
ATGCAGAATTAGTTAAATGCCTGTCCTCAGAAGAAACCACAGGTGCTGTCTCATCTGCTG
AAGGAATTGGGGATTCGGCCTCAGTGGAACAGAGCCTTTTAGCACTCAAACCTGAAGACT
CTACAGTAAACAAAACTCAGAATGAAGACAGTATTGCTCTTTCAGCCAGTGTTACACCCT
GTGTTTCCAAGGATGGAGGATTCATACAGTTGATGCCAGCTACAAGCACAACTTTTGGCA
ATTCAAATAACATTCTGATAGCTACCTGTGTAACTGATCCAACAGCCTTAGGAACAACTG
TCAGCCAGTCAAATGTTGTGGTATTGCCTGGAACTTCTGCACCTGTCACTGCTCAACCTC
CTCCACCTCAGTTACAGACACCACCAAGGTCAAATAGTGTATTTGCTGTCAACCAGGCTG
TGTCACCCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAACATGAAACTCAGCCTTCCAAGTGTGAGAAAGTTGCTTTGGATTCACAAAAGCCTT
CATCTTCTGTAAAAGAAGATGGAGATAGTATTTTTATCTCTTTAGGTGAAAGTAACTGTG
AGGACGTTACATTGATAGCTCCAGAAGATAATCCTGTAGAAGATAGACATTCTCTTCCTT
CAGAATCTGTGTGTTCTTCAATGAGAGATTCTCACCCTGAGTCCCAAAATACTACTGATA
AATCTGCTAGCGACAACTCAGCAGAGATAGATGCATCAAATATTGTCTCTCTCAAAATCA
TCATCAGTGATGATCCATTTGTTTCCTCAGATAATGAACTTAACAGTGCTGTTTCCAGTA
TCAGTGGAGAAAACTTGCCAACTATAATTTTATCTTCTCCTGCAAAATCACCTTCCAGAA
ATGCAGAATTAGTTAAATGCCTGTCCTCAGAAGAAACCACAGGTGCTGTCTCATCTGCTG
AAGGAATTGGGGATTCGGCCTCAGTGGAACAGAGCCTTTTAGCACTCAAACCTGAAGACT
CTACAGTAAACAAAACTCAGAATGAAGACAGTATTGCTCTTTCAGCCAGTGTTACACCCT
GTGTTTCCAAGGATGGAGGATTCATACAGTTGATGCCAGCTACAAGCACAACTTTTGGCA
ATTCAAATAACATTCTGATAGCTACCTGTGTAACTGATCCAACAGCCTTAGGAACAACTG
TCAGCCAGTCAAATGTTGTGGTATTGCCTGGAACTTCTGCACCTGTCACTGCTCAACCTC
CTCCACCTCAGTTACAGACACCACCAAGGTCAAATAGTGTATTTGCTGTCAACCAGGCTG
TGTCACCCAGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61859916|ref|XP_604956.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61859916|ref|XP_604956.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               44-160, - strand, RNAz p=0.911228
               

               
               201-400, - strand, RNAz p=0.900039
               

               
               601-760, - strand, RNAz p=0.985067

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-160, - strand, RNAz p=0.911228
               

               
               201-400, - strand, RNAz p=0.900039
               

               
               601-760, - strand, RNAz p=0.985067

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-852, gnl|bosTau2|chr15 (6352624-6353471)
               

               
               5-852, gnl|Hg17|chr11 (107548977-107548145)
               

               
               5-852, gnl|Mm7|chr9 (53541533-53542350)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-852, gnl|bosTau2|chr15 (6352624-6353471)
               

               
               5-852, gnl|Hg17|chr11 (107548977-107548145)
               

               
               5-852, gnl|Mm7|chr9 (53541533-53542350)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	44-160, - strand, RNAz p=0.911228
	201-400, - strand, RNAz p=0.900039
	601-760, - strand, RNAz p=0.985067

	5-852, gnl\|bosTau2\|chr15 (6352624-6353471)
	5-852, gnl\|Hg17\|chr11 (107548977-107548145)
	5-852, gnl\|Mm7\|chr9 (53541533-53542350)