Non-Coding RNA Search

Ss1.1-Pig4-TMW8032J17.3

Sequence:


               
               CATTTAGCTATGAGAGCAAGGGCTGTTGAACATGCCCTAGATTATAAAACACTTTTTTCC
TTCCCAGGAATGTTTCTTTCTTTCCTTCCCAGAATGTTTCTCTTGAAAATTTTAAAATTT
TCAAAATCGTTTGTCTGACGTCTGTCCCCTGAGTATCCCTCAGAGCTTTAGATAGCACCT
CCAGACCTATCCCAGTATAGCAGGTTTGGGATTTTTTTTTTTTTATGCACTCCAGTATAT
CCTGAATAAATTATTTTAGAAACATAATTGTGACTTAAGTTGGTGGCCACAGTAACAGGA
TTACTTTGAATTTTGCAAGTTATGGTACCCTTGATAAGGAATTAAAATAGTTCAAAATTT
AAGTGGAGTTGGTATTACTTTCTAAAGCCCATTTCTCACAGGAAGAAAACCACATTTATT
AACATTTTCTGTAGCTAATCAAATACTCTTCATATATAATTAATAGTCATGTTATCTTTT
TGTAGAATCCTTAACCTTTTGAACTTAAACTACAGTCTAACAGTCTTTTGACAGTAATGG
TGTAATTATCCTTTTGTCTCACTGGAGTTTTTAGTTAGTGAAAATGCCTTTACTCAACAA
AATGTATTTGAAATAGTTCTGTCACCTTATTTATAAATTTTGTCTTGTATTGTGATTTAA
TGAACCTTATTGTCCTTATGAAATGAAATGGTGGCTTTGTGAAATAAATTTACCAAAAAT
AGACATGTAAACATTTTTAAAGATTCCTTACCAGCTGAAACCAGACAGGTCGGCATTTTC
TGAGCTGAATGCCACTTGTTTATAGGCAATTTGAGAAGCCTATCCTCAAAGATGCATCTG
TTGTGATTCTTGAGACTGGCCCAGTGAGCAGTTATCTTTCCTACCAAGAATTTCCTACCA
ATTCTTGAGTCTGACCCAATGAGCAGTTATCTTTCCTACCAACTACCTTGATATAAGTAT
CTTGAGAGTTGCTGACCTCAATGGTTGTGAGAAAGCTCCTGGCATCTTCACCTCACTTCA
CACCTATTTTTAAAGTCAAAATACACAGCTTTCCCCTTTGTCCTCCAACCTCAGTGAACC
CCTTGGCACAGTCCTCTCCACGCCCTGCATGCAGTTCCACCCTAGATCTGACGTTGTATT
CCGTGTCCCAGAGCAGCATGGGAGCATGGCATGCTTGTTTTCCAGGGCCCAGTCAGTCAT
AGGTGCTAGCCTTGTCTCCACACACCAGCCATTCTAACACAAGTATATCACATTTCCTGA
ATCACCATTAAGAGAGCAATCTTTTCTCATCTAGACCAAAAATGTTAAAAGTACTAATAA
GCTCCTAGGATCTCAACACATTTCATACAAGTAAATGAGTATTATTTGATATGGTTCAGA
TGATGGTTTAAATGGTTACCATTTTAATTGTAATTTTGTTCTTTTTTTAAAGTTGTACTT
GAATGTAATGTAGTAAATATTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTAGCTATGAGAGCAAGGGCTGTTGAACATGCCCTAGATTATAAAACACTTTTTTCC
TTCCCAGGAATGTTTCTTTCTTTCCTTCCCAGAATGTTTCTCTTGAAAATTTTAAAATTT
TCAAAATCGTTTGTCTGACGTCTGTCCCCTGAGTATCCCTCAGAGCTTTAGATAGCACCT
CCAGACCTATCCCAGTATAGCAGGTTTGGGATTTTTTTTTTTTTATGCACTCCAGTATAT
CCTGAATAAATTATTTTAGAAACATAATTGTGACTTAAGTTGGTGGCCACAGTAACAGGA
TTACTTTGAATTTTGCAAGTTATGGTACCCTTGATAAGGAATTAAAATAGTTCAAAATTT
AAGTGGAGTTGGTATTACTTTCTAAAGCCCATTTCTCACAGGAAGAAAACCACATTTATT
AACATTTTCTGTAGCTAATCAAATACTCTTCATATATAATTAATAGTCATGTTATCTTTT
TGTAGAATCCTTAACCTTTTGAACTTAAACTACAGTCTAACAGTCTTTTGACAGTAATGG
TGTAATTATCCTTTTGTCTCACTGGAGTTTTTAGTTAGTGAAAATGCCTTTACTCAACAA
AATGTATTTGAAATAGTTCTGTCACCTTATTTATAAATTTTGTCTTGTATTGTGATTTAA
TGAACCTTATTGTCCTTATGAAATGAAATGGTGGCTTTGTGAAATAAATTTACCAAAAAT
AGACATGTAAACATTTTTAAAGATTCCTTACCAGCTGAAACCAGACAGGTCGGCATTTTC
TGAGCTGAATGCCACTTGTTTATAGGCAATTTGAGAAGCCTATCCTCAAAGATGCATCTG
TTGTGATTCTTGAGACTGGCCCAGTGAGCAGTTATCTTTCCTACCAAGAATTTCCTACCA
ATTCTTGAGTCTGACCCAATGAGCAGTTATCTTTCCTACCAACTACCTTGATATAAGTAT
CTTGAGAGTTGCTGACCTCAATGGTTGTGAGAAAGCTCCTGGCATCTTCACCTCACTTCA
CACCTATTTTTAAAGTCAAAATACACAGCTTTCCCCTTTGTCCTCCAACCTCAGTGAACC
CCTTGGCACAGTCCTCTCCACGCCCTGCATGCAGTTCCACCCTAGATCTGACGTTGTATT
CCGTGTCCCAGAGCAGCATGGGAGCATGGCATGCTTGTTTTCCAGGGCCCAGTCAGTCAT
AGGTGCTAGCCTTGTCTCCACACACCAGCCATTCTAACACAAGTATATCACATTTCCTGA
ATCACCATTAAGAGAGCAATCTTTTCTCATCTAGACCAAAAATGTTAAAAGTACTAATAA
GCTCCTAGGATCTCAACACATTTCATACAAGTAAATGAGTATTATTTGATATGGTTCAGA
TGATGGTTTAAATGGTTACCATTTTAATTGTAATTTTGTTCTTTTTTTAAAGTTGTACTT
GAATGTAATGTAGTAAATATTCAA

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               78-219, gnl|bosTau2|chr7 (43983324-43983470)
               

               
               78-219, gnl|Hg17|chr5 (153415351-153415769)
               

               
               78-219, gnl|Mm7|chr11 (57613524-57613651)
               


               
               229-886, gnl|bosTau2|chr7 (43983659-43984321)
               

               
               229-886, gnl|Hg17|chr5 (153415959-153416614)
               

               
               229-886, gnl|Mm7|chr11 (57613825-57614882)
               


               
               902-1463, gnl|bosTau2|chr7 (43984282-43984865)
               

               
               902-1463, gnl|Hg17|chr5 (153416575-153417179)
               

               
               902-1463, gnl|Mm7|chr11 (57614843-57615384)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-219, gnl|bosTau2|chr7 (43983324-43983470)
               

               
               78-219, gnl|Hg17|chr5 (153415351-153415769)
               

               
               78-219, gnl|Mm7|chr11 (57613524-57613651)
               


               
               229-886, gnl|bosTau2|chr7 (43983659-43984321)
               

               
               229-886, gnl|Hg17|chr5 (153415959-153416614)
               

               
               229-886, gnl|Mm7|chr11 (57613825-57614882)
               


               
               902-1463, gnl|bosTau2|chr7 (43984282-43984865)
               

               
               902-1463, gnl|Hg17|chr5 (153416575-153417179)
               

               
               902-1463, gnl|Mm7|chr11 (57614843-57615384)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	78-219, gnl\|bosTau2\|chr7 (43983324-43983470)
	78-219, gnl\|Hg17\|chr5 (153415351-153415769)
	78-219, gnl\|Mm7\|chr11 (57613524-57613651)

	229-886, gnl\|bosTau2\|chr7 (43983659-43984321)
	229-886, gnl\|Hg17\|chr5 (153415959-153416614)
	229-886, gnl\|Mm7\|chr11 (57613825-57614882)

	902-1463, gnl\|bosTau2\|chr7 (43984282-43984865)
	902-1463, gnl\|Hg17\|chr5 (153416575-153417179)
	902-1463, gnl\|Mm7\|chr11 (57614843-57615384)

	sin (0.349895)
	vin (0.332557)
	sto (0.179824)
	fhi (0.169578)
	mga (0.160205)
	isp (0.150376)
	liv (0.146284)
	lin (0.145603)
	pty (0.142714)
	lyg (0.133103)
	jca (0.11396)
	spc (0.113366)
	jej (0.0989218)