Non-Coding RNA Search

Ss1.1-Pig4-TMW8032K04.3

Sequence:


               
               GATGATGATGAGTCTTATCTGCACATGGCAGAGTTTTTTTTTCTCTGTTTATGTTTTATC
AATTGTTTTATCATTATTATGTTTATATGTTATTTAAAAGGCTGTAAAAGAAATACACAT
GGCACCTCTTCATGATCCCAATCCTCATGATTTGTGAACCGGTAGGAAGTTCCTCTGTCT
GGAATTCTAATGCGGCTCTTGGGGCTCCTCTAGAAATGCCACTTGGAAACATGTAACAAA
CTTGGGAGCTGATGTACAGGCAGGACCACCCCTGGGCAGAGAAAGAGAGGGCAGCAGGTT
AAGGGTGGGACTGGATGACCTTCCAGATCCTTCCTCAGAAATTAGTGCGTAGATGGAGCC
TGCCCTCTCCTGAGACCCCACTGGGGGTGTGAGCTGGTGTGGAGGGCGCATCAGTGAGGC
CCGGCTGGCGCTTGCGGGCCCCTGCACAGCAGTTGTCGTCCACCAGACCGCAGCGCAGGT
GGCAGCAGCTGGTGTCAGATTGCCCTTTTGTGTCTGTCCCTGTGCAAAGACAGTTTCCAC
TATGGCCGATTCAGTCTCTCACCTCTCCACCGGTTCAGCTAATTTGTAAGTTTCCACTAC
CTATGTATTTCCATCTTTACTCATTTTAACATCACTACCTTTAAAAATACCCTTGTATTT
TTAACTAAATGTTACCCATACAGCTTTCAGAGTTTTTTGTTTTCTTTTTTCTTTTGGCCT
GAACAGCATTAAATATCTGCATTTATCAAAAGGGAATATAGCAAATGTTGAATCATCAGT
TTTGCATGTGGCTCCTTTATGTGAATTATGTTCCTAATTTTGGCTTCGTATTATGGATCA
TCAGAAAAGTCGAAGGCTTGGCTAATCACGTAGAGAATGTTCAGGTTCCAGTATTTCACC
GGCCATTACTCCTGGGCTCTTGTGTGAGTCTCAGGGCACCACCACACACTCACCGAGCTT
GCTGAGCAGGCCACATTGCCCCATTTTGGTGGCCACAGACCCTCAGCTCACGTGGGAGCT
TTGAGTTTTCAGTTGCAGGAGGAGGGCACTTTGACAGGTTCCCATAAAACAAAGGTTCCA
TCCAGTGTTGCTTATGAGGCCCCCATTTAAAAAGAACCATGGAGACACATGGACAACTCG
GATGCGATGTGGATTCTGTCAAAGCGCCTGCAGCACAGTTGCCTTTGGTTTCCTTTAAAA
ATGTACAAATATTGTATAATACAGTTTTATTCCTCCACAGTTGTATTTGCCAAGCTTAGT
GCAGTAAGGTCCTTTTATTTATTTGTTTGGGGCAGTATTAATATAAATAAACAGATAGTT
ACTGTTTTATATATTCTTAGGTCATTCAAAGCCATGTATGCTGTAAATGTGCTAGTCTTT
AGAATGACAAATAATAAACAACTGACAAGAACATTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGATGATGAGTCTTATCTGCACATGGCAGAGTTTTTTTTTCTCTGTTTATGTTTTATC
AATTGTTTTATCATTATTATGTTTATATGTTATTTAAAAGGCTGTAAAAGAAATACACAT
GGCACCTCTTCATGATCCCAATCCTCATGATTTGTGAACCGGTAGGAAGTTCCTCTGTCT
GGAATTCTAATGCGGCTCTTGGGGCTCCTCTAGAAATGCCACTTGGAAACATGTAACAAA
CTTGGGAGCTGATGTACAGGCAGGACCACCCCTGGGCAGAGAAAGAGAGGGCAGCAGGTT
AAGGGTGGGACTGGATGACCTTCCAGATCCTTCCTCAGAAATTAGTGCGTAGATGGAGCC
TGCCCTCTCCTGAGACCCCACTGGGGGTGTGAGCTGGTGTGGAGGGCGCATCAGTGAGGC
CCGGCTGGCGCTTGCGGGCCCCTGCACAGCAGTTGTCGTCCACCAGACCGCAGCGCAGGT
GGCAGCAGCTGGTGTCAGATTGCCCTTTTGTGTCTGTCCCTGTGCAAAGACAGTTTCCAC
TATGGCCGATTCAGTCTCTCACCTCTCCACCGGTTCAGCTAATTTGTAAGTTTCCACTAC
CTATGTATTTCCATCTTTACTCATTTTAACATCACTACCTTTAAAAATACCCTTGTATTT
TTAACTAAATGTTACCCATACAGCTTTCAGAGTTTTTTGTTTTCTTTTTTCTTTTGGCCT
GAACAGCATTAAATATCTGCATTTATCAAAAGGGAATATAGCAAATGTTGAATCATCAGT
TTTGCATGTGGCTCCTTTATGTGAATTATGTTCCTAATTTTGGCTTCGTATTATGGATCA
TCAGAAAAGTCGAAGGCTTGGCTAATCACGTAGAGAATGTTCAGGTTCCAGTATTTCACC
GGCCATTACTCCTGGGCTCTTGTGTGAGTCTCAGGGCACCACCACACACTCACCGAGCTT
GCTGAGCAGGCCACATTGCCCCATTTTGGTGGCCACAGACCCTCAGCTCACGTGGGAGCT
TTGAGTTTTCAGTTGCAGGAGGAGGGCACTTTGACAGGTTCCCATAAAACAAAGGTTCCA
TCCAGTGTTGCTTATGAGGCCCCCATTTAAAAAGAACCATGGAGACACATGGACAACTCG
GATGCGATGTGGATTCTGTCAAAGCGCCTGCAGCACAGTTGCCTTTGGTTTCCTTTAAAA
ATGTACAAATATTGTATAATACAGTTTTATTCCTCCACAGTTGTATTTGCCAAGCTTAGT
GCAGTAAGGTCCTTTTATTTATTTGTTTGGGGCAGTATTAATATAAATAAACAGATAGTT
ACTGTTTTATATATTCTTAGGTCATTCAAAGCCATGTATGCTGTAAATGTGCTAGTCTTT
AGAATGACAAATAATAAACAACTGACAAGAACATTAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               274-383, - strand, RNAz p=0.805252

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-383, - strand, RNAz p=0.805252

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-420, gnl|bosTau2|chr11 (4072121-4071702)
               

               
               4-420, gnl|Hg17|chr2 (98663726-98664184)
               


               
               488-1408, gnl|bosTau2|chr11 (4071660-4070782)
               

               
               488-1408, gnl|Hg17|chr2 (98664239-98665135)
               

               
               488-1408, gnl|Mm7|chr1 (37651258-37652110)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-420, gnl|bosTau2|chr11 (4072121-4071702)
               

               
               4-420, gnl|Hg17|chr2 (98663726-98664184)
               


               
               488-1408, gnl|bosTau2|chr11 (4071660-4070782)
               

               
               488-1408, gnl|Hg17|chr2 (98664239-98665135)
               

               
               488-1408, gnl|Mm7|chr1 (37651258-37652110)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	4-420, gnl\|bosTau2\|chr11 (4072121-4071702)
	4-420, gnl\|Hg17\|chr2 (98663726-98664184)

	488-1408, gnl\|bosTau2\|chr11 (4071660-4070782)
	488-1408, gnl\|Hg17\|chr2 (98664239-98665135)
	488-1408, gnl\|Mm7\|chr1 (37651258-37652110)

	cbe (0.239234)
	ece (0.229305)
	tes (0.207814)
	fcc (0.197785)
	fbs (0.175346)
	nje (0.16592)
	tbr (0.154178)
	hlv (0.139256)
	sug (0.127291)
	thg (0.126791)
	cbl (0.114797)
	jca (0.11396)
	ldo (0.0970026)