Non-Coding RNA Search

Ss1.1-Pig4-TMW8032K08.5

Sequence:


               
               CAAACTTAAAATTGCTAATGACAGTATTAGTGCCTGAGTTTTTTAAGGAACTAAGGAGGA
AATGTGTTTTAATCTTTTGATAAATTTTCATTGACTTTCCCACTTCTGAATAGGTAGCCT
TTTCCAGAATATGCCAGTCTTTCCACTTCTTAGTATATACAAACTTCTAATAACATTTCT
ATTTGCTTTACCTTTTCAGTTTCCTTTTCTCTCCTCGCAATTTTCTTCTCTTCTGTAGAG
CAGAGGTAGATAGAAAGGTCTTTTTTCTTGGTTATAAGAAACCAAACTGGAAGAAAATCA
GTTCCTTTTTTTGTGTCCAACCAACTTAAATACTAAGAATCTATATTTAAAACTGTTAAT
TTAGGGGAGAAATTTTTGCTTTTTAAATAAATAATTTAAATTATATATTTTCAAATACTT
GAATAACACTTAATAATATTATTACTTTCTTTGGTCATTGTTTTTAAGTTACTGTATTGT
TTTCACTTAGAGTTATTGTAGTTATATTTTCTTTTTTTTTTTTTAATCCTTGTGTCAACT
CTATAAATCTGTTAGGGAAAGAGTATCATCTCCACTTTGTATATAAAATAACTGATATTC
AAGGAAGTAGTCACATAACACCCTGCATAGCTGAGAGTAGAATGGCCAGTCTAAGAGTAG
AATAAGATTTAGCTTAATAAGATTTAATTTAAATTAAGTTAATATAATAAGATTTTTCAT
AAAGAAATTTCTGAAAACAAAGATCACCATTTAGAATGCCTTGTTTTCTTTGAGTTTCCT
ACATTTTTTTAGTTCTTTGAACTGACTGTTCTAATTCAGGTTTTCATAAATAGCATCTCT
TACATCTTGAGTAATAAAACTGAATCAAAACTGTCTTTCCTTAATATTCCATTTCGTTTC
TTTTAGTTCATAGATAATTTAATTGTCATTAACGGACTGTTTAAGAAAAATTATGTTAGT
AATTAACAACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACTTAAAATTGCTAATGACAGTATTAGTGCCTGAGTTTTTTAAGGAACTAAGGAGGA
AATGTGTTTTAATCTTTTGATAAATTTTCATTGACTTTCCCACTTCTGAATAGGTAGCCT
TTTCCAGAATATGCCAGTCTTTCCACTTCTTAGTATATACAAACTTCTAATAACATTTCT
ATTTGCTTTACCTTTTCAGTTTCCTTTTCTCTCCTCGCAATTTTCTTCTCTTCTGTAGAG
CAGAGGTAGATAGAAAGGTCTTTTTTCTTGGTTATAAGAAACCAAACTGGAAGAAAATCA
GTTCCTTTTTTTGTGTCCAACCAACTTAAATACTAAGAATCTATATTTAAAACTGTTAAT
TTAGGGGAGAAATTTTTGCTTTTTAAATAAATAATTTAAATTATATATTTTCAAATACTT
GAATAACACTTAATAATATTATTACTTTCTTTGGTCATTGTTTTTAAGTTACTGTATTGT
TTTCACTTAGAGTTATTGTAGTTATATTTTCTTTTTTTTTTTTTAATCCTTGTGTCAACT
CTATAAATCTGTTAGGGAAAGAGTATCATCTCCACTTTGTATATAAAATAACTGATATTC
AAGGAAGTAGTCACATAACACCCTGCATAGCTGAGAGTAGAATGGCCAGTCTAAGAGTAG
AATAAGATTTAGCTTAATAAGATTTAATTTAAATTAAGTTAATATAATAAGATTTTTCAT
AAAGAAATTTCTGAAAACAAAGATCACCATTTAGAATGCCTTGTTTTCTTTGAGTTTCCT
ACATTTTTTTAGTTCTTTGAACTGACTGTTCTAATTCAGGTTTTCATAAATAGCATCTCT
TACATCTTGAGTAATAAAACTGAATCAAAACTGTCTTTCCTTAATATTCCATTTCGTTTC
TTTTAGTTCATAGATAATTTAATTGTCATTAACGGACTGTTTAAGAAAAATTATGTTAGT
AATTAACAACAT

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               56-685, gnl|bosTau2|chr14 (46102614-46101969)
               

               
               56-685, gnl|Mm7|chr4 (16058966-16058151)
               


               
               686-966, gnl|bosTau2|chr14 (46101997-46101713)
               

               
               686-966, gnl|Hg17|chr8 (90864021-90864270)
               

               
               686-966, gnl|Mm7|chr4 (16058199-16057852)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-685, gnl|bosTau2|chr14 (46102614-46101969)
               

               
               56-685, gnl|Mm7|chr4 (16058966-16058151)
               


               
               686-966, gnl|bosTau2|chr14 (46101997-46101713)
               

               
               686-966, gnl|Hg17|chr8 (90864021-90864270)
               

               
               686-966, gnl|Mm7|chr4 (16058199-16057852)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pan (0.23596)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)

	56-685, gnl\|bosTau2\|chr14 (46102614-46101969)
	56-685, gnl\|Mm7\|chr4 (16058966-16058151)

	686-966, gnl\|bosTau2\|chr14 (46101997-46101713)
	686-966, gnl\|Hg17\|chr8 (90864021-90864270)
	686-966, gnl\|Mm7\|chr4 (16058199-16057852)