Non-Coding RNA Search

Ss1.1-Pig4-TMW8032K11.3

Sequence:


               
               TTCTTGCTGGTGCGTCATCTGTAGAATGAAAGGCTGTGAAGTGCTGTGGGCATTTGGGAC
AGAGAACCTATAATCTTCGTGAACTTGGAACATTTAAATGTTACCAAAAAATTACTGTTT
TTGAGTTCTTGATTTATTTATTTTTTTGGGTTTTTTTAAGGGTCACACCCACGGCATATG
GAGGTTCCCAGGCCAGGGGTCCAATCGGAGCTGTAGCTGCTGATCTATGCCACAGCCATG
CCAGATCTGAGCCGCGTCTGTGACCTACACCACAGCTCACGGCAACGCCGGATCCTTAAT
GCACTGAGTAAGGCCAGGGATCGAACCTGCAACCTCATGGTTCCTAGTTGGATTTGTTAC
CCACTGAGCCACTTTTTTTTTTCCCTTGAGTACTTGATTTTATTGAAGATACAAACAATG
CTTGTGACCACCTTTGGCTGTAGACCACAAGCTGGCAGCCCGTGGGGCATGAGGGCCTTC
GGGACCAAGGAGGTGGTGGCCCTGCTGACTTCAGTGGCCTGGGGGACGGAGGGGAGCTGC
AGGCAGGACCCTGACCACCAAGCCTCTGTACTCCTGGAGGCCTCTTCTCAAAAGCAGGTG
TGTGGCCCAGTTGGGAACTGCTGGGAGAACGTGAAGAATTGGCCCTTCTTTTAAAATCAG
GCATTGGGGAACCCTCCCCTATTTTCTCAGGACTCTCTTTTAGGACCTGAGTCCTCCCCT
AGAGGCCGGGCACCCATCCTGGAGTCACACTGTCCACTTCAAGGACTGTGGATAGAGGCC
AAAGGCCCTCCAGGTACGCCTGACGCCCAACCTCCACCCATTAAACAACCCATTAAAAGA
AAGGGCTCTCCCTGCAGGGCCTCTGGCTGTGTGGGGAGGCCCACTGCCCTCAACCTGCCC
AGCCTGGATGGCCCATGCCTTTCAGGCTTCTTCCAGATGGTTCCAAGGCTGCAGTTCAGC
ATCCCCTGGAAGCGTGGCTGGCCTATGGTCAGAGCTGGTGCAGTTTGCCCCGTTCAGTCA
GCAGCGTCATGGCCACGGCATAGAGGACATAGCCCAGCACGAGGAGCAGGGCACAGAGCA
GGGGCCCCACGCAGAACAGGGAGGCCACGAAGAAAGCCAGCAGCAGGGTCAGCAGAGTCC
GGTAGCTGCCCAGGAAGCGCAGGCTGAGGCGGGGGCCCCGTGCTCGGTTGGCCGCACGCC
CCCGGCCCACGGGGCTCAGCAGGCGCCTGCCAGATAGCCCGGGCTCCAGGAGGTGGTAGC
GACAGAAGCTGCCGAGGAAGTCAGCCCTTGAGCACAGGGCTGCCATCTGGCCTGCGAACC
TGTGGTTGATGGCCGAGGACAGCCTGAAGAGCAGGCGGACCAGGCTGGCAATCTCATAGC
TCCGGATGGGCTGCAGCTCCGAGTCCCCCTGGTACTCAATGTCAAAGCGGCGCAGTCCAT
TGATGATCTGGTACCGGCCCAGGGGCGTGAGGATGAGTCCGTCCTCACCCACGACGCAGT
CTGGGAGCTGCTTCTTCCCGTTCTCATCCTGTGCTGTCCCCAAGGCAAGTGTGAGCTGCG
CGAGCTGGGCCTCGCTGAGCCGGAACACCTGGCACAGGTACTCCAGCGCCTTCTCGAGGT
ACTCATCTGTCTTACGGACACTGTCCTGCCCCATCTCGTCCAGGTCATTGCCAGGGTAAG
AGCCGTTGGTGTCCGTGGGGTAGAAGCCCAACCATGACAGAAAGGGACGGCCAGCCGTGC
TCTCCCCGTACTGGTCAGAGAGCGACTTGGCCGTCTGCTTGGCCTGTGTGATGAGCTGGG
CCAGGCGCAGGACCAGTGCCCGGACCTCGGGCCCGAACATAGGGGTGTACTTGCAGTCCT
GGCCCTCCAGGCTGTACACGTGGCTCTTCACCTTGAAGGAGGCGTCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTTGCTGGTGCGTCATCTGTAGAATGAAAGGCTGTGAAGTGCTGTGGGCATTTGGGAC
AGAGAACCTATAATCTTCGTGAACTTGGAACATTTAAATGTTACCAAAAAATTACTGTTT
TTGAGTTCTTGATTTATTTATTTTTTTGGGTTTTTTTAAGGGTCACACCCACGGCATATG
GAGGTTCCCAGGCCAGGGGTCCAATCGGAGCTGTAGCTGCTGATCTATGCCACAGCCATG
CCAGATCTGAGCCGCGTCTGTGACCTACACCACAGCTCACGGCAACGCCGGATCCTTAAT
GCACTGAGTAAGGCCAGGGATCGAACCTGCAACCTCATGGTTCCTAGTTGGATTTGTTAC
CCACTGAGCCACTTTTTTTTTTCCCTTGAGTACTTGATTTTATTGAAGATACAAACAATG
CTTGTGACCACCTTTGGCTGTAGACCACAAGCTGGCAGCCCGTGGGGCATGAGGGCCTTC
GGGACCAAGGAGGTGGTGGCCCTGCTGACTTCAGTGGCCTGGGGGACGGAGGGGAGCTGC
AGGCAGGACCCTGACCACCAAGCCTCTGTACTCCTGGAGGCCTCTTCTCAAAAGCAGGTG
TGTGGCCCAGTTGGGAACTGCTGGGAGAACGTGAAGAATTGGCCCTTCTTTTAAAATCAG
GCATTGGGGAACCCTCCCCTATTTTCTCAGGACTCTCTTTTAGGACCTGAGTCCTCCCCT
AGAGGCCGGGCACCCATCCTGGAGTCACACTGTCCACTTCAAGGACTGTGGATAGAGGCC
AAAGGCCCTCCAGGTACGCCTGACGCCCAACCTCCACCCATTAAACAACCCATTAAAAGA
AAGGGCTCTCCCTGCAGGGCCTCTGGCTGTGTGGGGAGGCCCACTGCCCTCAACCTGCCC
AGCCTGGATGGCCCATGCCTTTCAGGCTTCTTCCAGATGGTTCCAAGGCTGCAGTTCAGC
ATCCCCTGGAAGCGTGGCTGGCCTATGGTCAGAGCTGGTGCAGTTTGCCCCGTTCAGTCA
GCAGCGTCATGGCCACGGCATAGAGGACATAGCCCAGCACGAGGAGCAGGGCACAGAGCA
GGGGCCCCACGCAGAACAGGGAGGCCACGAAGAAAGCCAGCAGCAGGGTCAGCAGAGTCC
GGTAGCTGCCCAGGAAGCGCAGGCTGAGGCGGGGGCCCCGTGCTCGGTTGGCCGCACGCC
CCCGGCCCACGGGGCTCAGCAGGCGCCTGCCAGATAGCCCGGGCTCCAGGAGGTGGTAGC
GACAGAAGCTGCCGAGGAAGTCAGCCCTTGAGCACAGGGCTGCCATCTGGCCTGCGAACC
TGTGGTTGATGGCCGAGGACAGCCTGAAGAGCAGGCGGACCAGGCTGGCAATCTCATAGC
TCCGGATGGGCTGCAGCTCCGAGTCCCCCTGGTACTCAATGTCAAAGCGGCGCAGTCCAT
TGATGATCTGGTACCGGCCCAGGGGCGTGAGGATGAGTCCGTCCTCACCCACGACGCAGT
CTGGGAGCTGCTTCTTCCCGTTCTCATCCTGTGCTGTCCCCAAGGCAAGTGTGAGCTGCG
CGAGCTGGGCCTCGCTGAGCCGGAACACCTGGCACAGGTACTCCAGCGCCTTCTCGAGGT
ACTCATCTGTCTTACGGACACTGTCCTGCCCCATCTCGTCCAGGTCATTGCCAGGGTAAG
AGCCGTTGGTGTCCGTGGGGTAGAAGCCCAACCATGACAGAAAGGGACGGCCAGCCGTGC
TCTCCCCGTACTGGTCAGAGAGCGACTTGGCCGTCTGCTTGGCCTGTGTGATGAGCTGGG
CCAGGCGCAGGACCAGTGCCCGGACCTCGGGCCCGAACATAGGGGTGTACTTGCAGTCCT
GGCCCTCCAGGCTGTACACGTGGCTCTTCACCTTGAAGGAGGCGTCGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5R873_PONPY

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5R873_PONPY

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1188-1319, - strand, RNAz p=0.726664

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1188-1319, - strand, RNAz p=0.726664

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               989-1319, gnl|bosTau2|chr17 (45681492-45681162)
               

               
               989-1319, gnl|Hg17|chr2 (130626358-130626688)
               

               
               989-1319, gnl|Mm7|chr16 (17192536-17192206)
               


               
               1538-1814, gnl|bosTau2|chr17 (45680625-45680347)
               

               
               1538-1814, gnl|Hg17|chr2 (130627408-130627739)
               

               
               1538-1814, gnl|Mm7|chr16 (17191355-17191094)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               989-1319, gnl|bosTau2|chr17 (45681492-45681162)
               

               
               989-1319, gnl|Hg17|chr2 (130626358-130626688)
               

               
               989-1319, gnl|Mm7|chr16 (17192536-17192206)
               


               
               1538-1814, gnl|bosTau2|chr17 (45680625-45680347)
               

               
               1538-1814, gnl|Hg17|chr2 (130627408-130627739)
               

               
               1538-1814, gnl|Mm7|chr16 (17191355-17191094)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               nlu (0.383362)
               

               
               nca (0.273748)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               nca (0.273748)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	989-1319, gnl\|bosTau2\|chr17 (45681492-45681162)
	989-1319, gnl\|Hg17\|chr2 (130626358-130626688)
	989-1319, gnl\|Mm7\|chr16 (17192536-17192206)

	1538-1814, gnl\|bosTau2\|chr17 (45680625-45680347)
	1538-1814, gnl\|Hg17\|chr2 (130627408-130627739)
	1538-1814, gnl\|Mm7\|chr16 (17191355-17191094)

	nlu (0.383362)
	nca (0.273748)
	eje (0.197668)
	nep (0.183925)
	ton (0.1755)
	fhi (0.169578)
	csp (0.161186)
	eli (0.151814)
	hyp (0.142837)
	cov (0.132153)
	eep (0.122564)
	pgl (0.118483)
	jca (0.11396)
	nbm (0.0993246)