Non-Coding RNA Search

Ss1.1-Pig4-TMW8032K12.3

Sequence:


               
               CCCTGCTCCGCGAGCGCCCTCTCCTCAGTCGCCGTCAGGTATATCTTTCCAGGACTCCAC
TCATTCCAGAGAGGGTAGCCCAGAGTGAGAGATTATGGCTACTATGGTTTTTTCAGCTGG
ACCTCTGAGTCCTGAAGTTTTCCAGCCAGATGAAGGCCATCACCTTCAAGCAGAAGAACC
AGAATTGGTAAAGGAATTGGTGACATTTAAAGATGTGGCTATAGACTTCACATTGGAAGA
GTGGAGGTTGATGGACCCCACACAGAGGAACCTACACAAGGATGTAATGCTAGAGAATTA
TAGGAATCTTGTCTCCTTGGGGCTTGCAGTTTCCAAACCAGACATGATATCTCATTTGGA
AGATGGGAAAGGACCGTGGGTGGTAGTGAGAGAGATATCAAGAACCTCCAATCCAGAGTT
GGGGACCAAATCTACAACCAAGAATACTATACTACCAGAGAATATTTTTGAAGAACATTT
TCCACATGATACCGTAGTAGAGAAACTCACAGAAAATGGCCTCTGGGACACCAGAATGGG
AGAATTATGGAAATGGAGTGACAGGATATTGAGATTGCACAATAGTGAGGAGAGTCATTT
GAGTCAAGGAATAGTTACACACAAGAAAATTCCCATGATTCAAAAAGGCTTTAGGTTTGG
ATTTATTCCTTTTCTAGAACCGGGAGTTATCACAGAAGAGTCCCACAGCAAATACCAAAC
ACATGAGGAAATTTTCACAGAGAATTTAGATTTGATTACAGATACCTGTTTGGGGAAGAA
AATTTCCAAGGATACAAAAGGCAGCAAAATCATAAGCCCTGCTTCAGAACTCACTTTAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGCTCCGCGAGCGCCCTCTCCTCAGTCGCCGTCAGGTATATCTTTCCAGGACTCCAC
TCATTCCAGAGAGGGTAGCCCAGAGTGAGAGATTATGGCTACTATGGTTTTTTCAGCTGG
ACCTCTGAGTCCTGAAGTTTTCCAGCCAGATGAAGGCCATCACCTTCAAGCAGAAGAACC
AGAATTGGTAAAGGAATTGGTGACATTTAAAGATGTGGCTATAGACTTCACATTGGAAGA
GTGGAGGTTGATGGACCCCACACAGAGGAACCTACACAAGGATGTAATGCTAGAGAATTA
TAGGAATCTTGTCTCCTTGGGGCTTGCAGTTTCCAAACCAGACATGATATCTCATTTGGA
AGATGGGAAAGGACCGTGGGTGGTAGTGAGAGAGATATCAAGAACCTCCAATCCAGAGTT
GGGGACCAAATCTACAACCAAGAATACTATACTACCAGAGAATATTTTTGAAGAACATTT
TCCACATGATACCGTAGTAGAGAAACTCACAGAAAATGGCCTCTGGGACACCAGAATGGG
AGAATTATGGAAATGGAGTGACAGGATATTGAGATTGCACAATAGTGAGGAGAGTCATTT
GAGTCAAGGAATAGTTACACACAAGAAAATTCCCATGATTCAAAAAGGCTTTAGGTTTGG
ATTTATTCCTTTTCTAGAACCGGGAGTTATCACAGAAGAGTCCCACAGCAAATACCAAAC
ACATGAGGAAATTTTCACAGAGAATTTAGATTTGATTACAGATACCTGTTTGGGGAAGAA
AATTTCCAAGGATACAAAAGGCAGCAAAATCATAAGCCCTGCTTCAGAACTCACTTTAGG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               192-321, gnl|bosTau2|chr19 (23610143-23610272)
               

               
               192-321, gnl|Hg17|chr17 (16499738-16499850)
               

               
               192-321, gnl|Mm7|chr13 (71308723-71308594)
               


               
               413-839, gnl|bosTau2|chr19 (23612904-23613330)
               

               
               413-839, gnl|Hg17|chr17 (16468552-16468129)
               

               
               413-839, gnl|Mm7|chr11 (62835252-62834826)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               192-321, gnl|bosTau2|chr19 (23610143-23610272)
               

               
               192-321, gnl|Hg17|chr17 (16499738-16499850)
               

               
               192-321, gnl|Mm7|chr13 (71308723-71308594)
               


               
               413-839, gnl|bosTau2|chr19 (23612904-23613330)
               

               
               413-839, gnl|Hg17|chr17 (16468552-16468129)
               

               
               413-839, gnl|Mm7|chr11 (62835252-62834826)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	192-321, gnl\|bosTau2\|chr19 (23610143-23610272)
	192-321, gnl\|Hg17\|chr17 (16499738-16499850)
	192-321, gnl\|Mm7\|chr13 (71308723-71308594)

	413-839, gnl\|bosTau2\|chr19 (23612904-23613330)
	413-839, gnl\|Hg17\|chr17 (16468552-16468129)
	413-839, gnl\|Mm7\|chr11 (62835252-62834826)