Ss1.1-Pig4-TMW8032K15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGTATGGACTGAAGAGCTACATTGAGTATCAGTTAACACCCACTAACACGAATCGATC TGTAAACCACAGGTATAAGCACTTTGACTGGCTGTATGAGCGCCTCCTGGTGAAGTTTGG GTTAGCCATCCCGATCCCTTCTCTCCCAGATAAGCAAGTCACAGGTCGCTTTGAAGAAGA ATTTATCAAAATGCGCATGGAGAGACTTCAGGCATGGATGTCCAGGATGTGTCGCCATCC AGTAATCTCAGAAAGTGAGGTTTTCCAGCAGTTTCTAAATTTCCGAGATGAAAAGGAGTG GAAAACTGGGAAGAGGAAGGCTGAAAAAGATGAGCTGGTGGGAGTGATGGTATTTTCCAC CATGGAACCAGAGGCGCCTGACCTGGACTTAGTGGAGATAGAACAGAAGTGCGAGGCTGT TGGCAAGTTCACCAAGGCCATGGATGACGGCGTCAAGGAGCTGCTGACCGTGGGCCAGGA GCACTGGAAGCGCTGCACAGGACCATTACCCAAGGAATATCAGAAGATAGGCAAGGCCTT GCAGAGTTTAGCAACAGTCTTCAGTTCTAGTGGCTATCAAGGTGAAACAGATCTCAATGA TGCAATAACAGAAGCAGGAAAGACCTACGAAGAAATTGCCAGCCTAGTGGCAGAACAGCC CAAGAAAGACCTCCACTTCCTGATGGAATGTAACCATGAGTATAAAGGGTTCCTCGGCTG CTTCCCTGACATCATCGGCACTCACAAGGGAGCAATAGAAAAAGTGAAAGAAAGTGATAA GCTGGTTGCAACTAGTAAGATCACCCCACAGGACAAACAGAACATGGTGAAACGCGTTGG CACGATGTCTTATGCATTGCAAGCCGAGATGAATCACTTCCACAGTAACCGGATCTATGA CTACAACAGTGTCATCCGCCTGTACCTGGAGCAGCAGGTGCAGTTCTACGAGACGATCGC GGAAAAGCTGAGGCAGGCCCTCGGCCGCTTCCCGGTGATGTAGGCGCGGACAGCACGTCA AGACACGCTGCCGAAGTGCTTCTTCCTGACTTGGGGCAATGCAATGTAATTTTTTTTTCC CTCATCCAAAAAACAGAAAAGAAAACCAAAAAGAAACAGTTGAAAAAATGGCATTTACTT TGTAAACCAGCCTAAATGCATCAGTTATTTAGGGATATTCTTCTTTTGTTCCTTCCACAT CCATCGCCTAAGCCGGTGGAAGTTGTCTATTTTTGGAAAGTACTTAAAGTCAGCAGAATT TTGAAGGGAAAATTAGGGATTTCCCTCACTGATATTTTACATAAAATTTTAATTTATGAA TCACCCATGATCTTCTAGTCCTTACCCAATGTCAGATTACTAATTGCTTTCTTAAAAATA TGAAATATGCAGAATAAAAAATATATGTTTGTATATTTTTATAACTCTTTCTAGCCCTTT GGGATTCCTGTCTATTTAGGAAAACCCACATGCCTTTCACTGACATATTTATGACTCAGG AGGGAGGAAGCAGAGGGGCTCTTGGGGCCCGGCCCGGCACCCCAAGTCCCAGTGGGTGGG CCGCCCATGTCCCTTCAGAGGACCTGGCTGGGCAGGAGCCCAGGATCAGCTCCCCGGCCC GCTGCCCGCCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGTATGGACTGAAGAGCTACATTGAGTATCAGTTAACACCCACTAACACGAATCGATC TGTAAACCACAGGTATAAGCACTTTGACTGGCTGTATGAGCGCCTCCTGGTGAAGTTTGG GTTAGCCATCCCGATCCCTTCTCTCCCAGATAAGCAAGTCACAGGTCGCTTTGAAGAAGA ATTTATCAAAATGCGCATGGAGAGACTTCAGGCATGGATGTCCAGGATGTGTCGCCATCC AGTAATCTCAGAAAGTGAGGTTTTCCAGCAGTTTCTAAATTTCCGAGATGAAAAGGAGTG GAAAACTGGGAAGAGGAAGGCTGAAAAAGATGAGCTGGTGGGAGTGATGGTATTTTCCAC CATGGAACCAGAGGCGCCTGACCTGGACTTAGTGGAGATAGAACAGAAGTGCGAGGCTGT TGGCAAGTTCACCAAGGCCATGGATGACGGCGTCAAGGAGCTGCTGACCGTGGGCCAGGA GCACTGGAAGCGCTGCACAGGACCATTACCCAAGGAATATCAGAAGATAGGCAAGGCCTT GCAGAGTTTAGCAACAGTCTTCAGTTCTAGTGGCTATCAAGGTGAAACAGATCTCAATGA TGCAATAACAGAAGCAGGAAAGACCTACGAAGAAATTGCCAGCCTAGTGGCAGAACAGCC CAAGAAAGACCTCCACTTCCTGATGGAATGTAACCATGAGTATAAAGGGTTCCTCGGCTG CTTCCCTGACATCATCGGCACTCACAAGGGAGCAATAGAAAAAGTGAAAGAAAGTGATAA GCTGGTTGCAACTAGTAAGATCACCCCACAGGACAAACAGAACATGGTGAAACGCGTTGG CACGATGTCTTATGCATTGCAAGCCGAGATGAATCACTTCCACAGTAACCGGATCTATGA CTACAACAGTGTCATCCGCCTGTACCTGGAGCAGCAGGTGCAGTTCTACGAGACGATCGC GGAAAAGCTGAGGCAGGCCCTCGGCCGCTTCCCGGTGATGTAGGCGCGGACAGCACGTCA AGACACGCTGCCGAAGTGCTTCTTCCTGACTTGGGGCAATGCAATGTAATTTTTTTTTCC CTCATCCAAAAAACAGAAAAGAAAACCAAAAAGAAACAGTTGAAAAAATGGCATTTACTT TGTAAACCAGCCTAAATGCATCAGTTATTTAGGGATATTCTTCTTTTGTTCCTTCCACAT CCATCGCCTAAGCCGGTGGAAGTTGTCTATTTTTGGAAAGTACTTAAAGTCAGCAGAATT TTGAAGGGAAAATTAGGGATTTCCCTCACTGATATTTTACATAAAATTTTAATTTATGAA TCACCCATGATCTTCTAGTCCTTACCCAATGTCAGATTACTAATTGCTTTCTTAAAAATA TGAAATATGCAGAATAAAAAATATATGTTTGTATATTTTTATAACTCTTTCTAGCCCTTT GGGATTCCTGTCTATTTAGGAAAACCCACATGCCTTTCACTGACATATTTATGACTCAGG AGGGAGGAAGCAGAGGGGCTCTTGGGGCCCGGCCCGGCACCCCAAGTCCCAGTGGGTGGG CCGCCCATGTCCCTTCAGAGGACCTGGCTGGGCAGGAGCCCAGGATCAGCTCCCCGGCCC GCTGCCCGCCTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 162-296, gnl|bosTau2|chr9 (57939923-57940057) | |
| 162-296, gnl|canFam2|chr1 (50476177-50476341) | |
| 162-296, gnl|danRer3|chr20 (50887197-50887040) | |
| 162-296, gnl|dasNov1|scaffold_122644 (5159-4994) | |
| 162-296, gnl|echTel1|scaffold_287619 (86554-86403) | |
| 162-296, gnl|fr1|chrUn (53006059-53005917) | |
| 162-296, gnl|galGal2|chr3 (50704555-50704711) | |
| 162-296, gnl|hg17|chr6 (158312958-158313122) | |
| 162-296, gnl|Hg17|chr6 (158312969-158313103) | |
| 162-296, gnl|loxAfr1|scaffold_33579 (32558-32722) | |
| 162-296, gnl|mm7|chr17 (5864529-5864694) | |
| 162-296, gnl|Mm7|chr17 (5864540-5864674) | |
| 162-296, gnl|monDom2|scaffold_0 (45927607-45927443) | |
| 162-296, gnl|oryCun1|scaffold_72074 (467-627) | |
| 162-296, gnl|panTro1|chr5 (162121025-162121189) | |
| 162-296, gnl|rheMac2|chr4 (105006869-105006705) | |
| 162-296, gnl|rn3|chr8 (60690664-60690532) | |
| 162-296, gnl|tetNig1|chr14 (5090144-5090279) | |
| 400-503, gnl|bosTau2|chr9 (57945569-57945672) | |
| 400-503, gnl|canFam2|chr1 (50482089-50482223) | |
| 400-503, gnl|danRer3|chr20 (50884773-50884663) | |
| 400-503, gnl|fr1|chrUn (53005645-53005519) | |
| 400-503, gnl|galGal2|chr3 (50709818-50709931) | |
| 400-503, gnl|hg17|chr6 (158320037-158320171) | |
| 400-503, gnl|Hg17|chr6 (158320040-158320143) | |
| 400-503, gnl|mm7|chr17 (5866730-5866843) | |
| 400-503, gnl|Mm7|chr17 (5866733-5866836) | |
| 400-503, gnl|monDom2|scaffold_0 (45921799-45921665) | |
| 400-503, gnl|oryCun1|scaffold_94487 (713-600) | |
| 400-503, gnl|panTro1|chr5 (162128132-162128266) | |
| 400-503, gnl|rheMac2|chr4 (104999928-104999794) | |
| 400-503, gnl|tetNig1|chr14 (5090550-5090675) | |
| 742-863, gnl|bosTau2|chr9 (57956068-57956188) | |
| 742-863, gnl|canFam2|chr1 (50494393-50494533) | |
| 742-863, gnl|danRer3|chr20 (50867437-50867296) | |
| 742-863, gnl|dasNov1|scaffold_5300 (25726-25585) | |
| 742-863, gnl|echTel1|scaffold_287619 (74331-74208) | |
| 742-863, gnl|fr1|chrUn (53004548-53004422) | |
| 742-863, gnl|galGal2|chr3 (50720137-50720268) | |
| 742-863, gnl|hg17|chr6 (158330061-158330206) | |
| 742-863, gnl|Hg17|chr6 (158330068-158330188) | |
| 742-863, gnl|loxAfr1|scaffold_27190 (1151-1293) | |
| 742-863, gnl|mm7|chr17 (5873240-5873382) | |
| 742-863, gnl|Mm7|chr17 (5873248-5873368) | |
| 742-863, gnl|monDom2|scaffold_0 (45910371-45910231) | |
| 742-863, gnl|oryCun1|scaffold_199996 (113159-113301) | |
| 742-863, gnl|panTro1|chr5 (162138144-162138290) | |
| 742-863, gnl|rheMac2|chr4 (104988499-104988354) | |
| 742-863, gnl|tetNig1|chr14 (5091597-5091722) | |
| 955-1615, gnl|bosTau2|chr9 (57960258-57960940) | |
| 955-1615, gnl|Hg17|chr6 (158334231-158334962) | |
| 955-1615, gnl|Mm7|chr17 (5876972-5877702) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 162-296, gnl|bosTau2|chr9 (57939923-57940057) | |
| 162-296, gnl|canFam2|chr1 (50476177-50476341) | |
| 162-296, gnl|danRer3|chr20 (50887197-50887040) | |
| 162-296, gnl|dasNov1|scaffold_122644 (5159-4994) | |
| 162-296, gnl|echTel1|scaffold_287619 (86554-86403) | |
| 162-296, gnl|fr1|chrUn (53006059-53005917) | |
| 162-296, gnl|galGal2|chr3 (50704555-50704711) | |
| 162-296, gnl|hg17|chr6 (158312958-158313122) | |
| 162-296, gnl|Hg17|chr6 (158312969-158313103) | |
| 162-296, gnl|loxAfr1|scaffold_33579 (32558-32722) | |
| 162-296, gnl|mm7|chr17 (5864529-5864694) | |
| 162-296, gnl|Mm7|chr17 (5864540-5864674) | |
| 162-296, gnl|monDom2|scaffold_0 (45927607-45927443) | |
| 162-296, gnl|oryCun1|scaffold_72074 (467-627) | |
| 162-296, gnl|panTro1|chr5 (162121025-162121189) | |
| 162-296, gnl|rheMac2|chr4 (105006869-105006705) | |
| 162-296, gnl|rn3|chr8 (60690664-60690532) | |
| 162-296, gnl|tetNig1|chr14 (5090144-5090279) | |
| 400-503, gnl|bosTau2|chr9 (57945569-57945672) | |
| 400-503, gnl|canFam2|chr1 (50482089-50482223) | |
| 400-503, gnl|danRer3|chr20 (50884773-50884663) | |
| 400-503, gnl|fr1|chrUn (53005645-53005519) | |
| 400-503, gnl|galGal2|chr3 (50709818-50709931) | |
| 400-503, gnl|hg17|chr6 (158320037-158320171) | |
| 400-503, gnl|Hg17|chr6 (158320040-158320143) | |
| 400-503, gnl|mm7|chr17 (5866730-5866843) | |
| 400-503, gnl|Mm7|chr17 (5866733-5866836) | |
| 400-503, gnl|monDom2|scaffold_0 (45921799-45921665) | |
| 400-503, gnl|oryCun1|scaffold_94487 (713-600) | |
| 400-503, gnl|panTro1|chr5 (162128132-162128266) | |
| 400-503, gnl|rheMac2|chr4 (104999928-104999794) | |
| 400-503, gnl|tetNig1|chr14 (5090550-5090675) | |
| 742-863, gnl|bosTau2|chr9 (57956068-57956188) | |
| 742-863, gnl|canFam2|chr1 (50494393-50494533) | |
| 742-863, gnl|danRer3|chr20 (50867437-50867296) | |
| 742-863, gnl|dasNov1|scaffold_5300 (25726-25585) | |
| 742-863, gnl|echTel1|scaffold_287619 (74331-74208) | |
| 742-863, gnl|fr1|chrUn (53004548-53004422) | |
| 742-863, gnl|galGal2|chr3 (50720137-50720268) | |
| 742-863, gnl|hg17|chr6 (158330061-158330206) | |
| 742-863, gnl|Hg17|chr6 (158330068-158330188) | |
| 742-863, gnl|loxAfr1|scaffold_27190 (1151-1293) | |
| 742-863, gnl|mm7|chr17 (5873240-5873382) | |
| 742-863, gnl|Mm7|chr17 (5873248-5873368) | |
| 742-863, gnl|monDom2|scaffold_0 (45910371-45910231) | |
| 742-863, gnl|oryCun1|scaffold_199996 (113159-113301) | |
| 742-863, gnl|panTro1|chr5 (162138144-162138290) | |
| 742-863, gnl|rheMac2|chr4 (104988499-104988354) | |
| 742-863, gnl|tetNig1|chr14 (5091597-5091722) | |
| 955-1615, gnl|bosTau2|chr9 (57960258-57960940) | |
| 955-1615, gnl|Hg17|chr6 (158334231-158334962) | |
| 955-1615, gnl|Mm7|chr17 (5876972-5877702) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cbr (1.79166) | |
| sin (0.69979) | |
| clu (0.358938) | |
| pla (0.267344) | |
| tes (0.207814) | |
| hea (0.204499) | |
| nep (0.183925) | |
| sag (0.182715) | |
| rec (0.17307) | |
| csp (0.161186) | |
| ski (0.146735) | |
| liv (0.146284) | |
| ste (0.135208) | |
| eep (0.122564) | |
| eru (0.120048) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (1.79166) | |
| sin (0.69979) | |
| clu (0.358938) | |
| pla (0.267344) | |
| tes (0.207814) | |
| hea (0.204499) | |
| nep (0.183925) | |
| sag (0.182715) | |
| rec (0.17307) | |
| csp (0.161186) | |
| ski (0.146735) | |
| liv (0.146284) | |
| ste (0.135208) | |
| eep (0.122564) | |
| eru (0.120048) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |