Ss1.1-Pig4-TMW8032K19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTTTAAATGAGGAGTGTGATAATTTGTGCAGCTGTTACCAATACCAAGATGGCTGTATC ATTTGGCACCAATATATAAACTGCTTCACCATTCAGGATCTTCTTCAACACAGTGAATTT ATTACTCATGAAATGACAGTGTTGATTATTTATAACCTTTTGACAATAGTGGAGAAACTA CACAAAGCAGAAATAGTCCATGGTGACTTGAGTCCAAGGAGTCTGATTCTTAGAAACAGA ATCCATGATCCCTATGATTGCGATAAAAACAATCAAGCTTTGAAGATAGTGGACTTCTCC TACAGCGTCGACCTTAGGGCACAGCTAGACGTTTTTAACCTCAGCGGCTTTCGGACTGTA CAGATCCTGGAAGGACAAAAGATCCTGGCTAACTGTTCTTCTCCCTACCAGGTAGATCTG TTTGGTATAGCAGATTTAGCACATTTACTATTGTTCAAGGAACACCTACAGGTCTTCTGG GATGGGTCCCTCTGGAAACTTAGCCAAAATATTTCTGAGCTAAAAGATGGTGAATTGTGG AATAAATTCTTTGTGCGGATTCTGAATGCCAGTGATGAGTCCACAGTGTCTGTTCTGAGG GAACTTGCAGCAGAAATGAATGGGGTGTTTGACACCACATTCCAAAGTCACCTGAACAAA GCTTTATGGAAGGTAGGGACGTTAATCAGTCCTGGGGCTTTGCTTTTCCAGCAAGATAGG CAGTCAAGTCTCTCACAGATTCCTGCCTAAAACCAATGGTTGTACTGTGTAACAGTGGAC CCGTACATGCTATGATTTAATTTAGGTACACTACTAACACTTTTTTACTTTTTGGCAGAA GTATATTTCTAGGTTACTGGCATTTTCTACTTAACACTGTACCTACTCTTGGCTTTGTTT AACAAAGAACTGTTTTATACTAAATGGACTCCGTATTAATGGGTACCTTATTGCCATTTA ACATATTTGTCTCTATTTTTCCCTGTACTTTTCCCATTTGTAATTTGTGACATGTACCCT TATGATCACTGTATTTTGTAAATAATAAAATTGTATTTGTTAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTTTAAATGAGGAGTGTGATAATTTGTGCAGCTGTTACCAATACCAAGATGGCTGTATC ATTTGGCACCAATATATAAACTGCTTCACCATTCAGGATCTTCTTCAACACAGTGAATTT ATTACTCATGAAATGACAGTGTTGATTATTTATAACCTTTTGACAATAGTGGAGAAACTA CACAAAGCAGAAATAGTCCATGGTGACTTGAGTCCAAGGAGTCTGATTCTTAGAAACAGA ATCCATGATCCCTATGATTGCGATAAAAACAATCAAGCTTTGAAGATAGTGGACTTCTCC TACAGCGTCGACCTTAGGGCACAGCTAGACGTTTTTAACCTCAGCGGCTTTCGGACTGTA CAGATCCTGGAAGGACAAAAGATCCTGGCTAACTGTTCTTCTCCCTACCAGGTAGATCTG TTTGGTATAGCAGATTTAGCACATTTACTATTGTTCAAGGAACACCTACAGGTCTTCTGG GATGGGTCCCTCTGGAAACTTAGCCAAAATATTTCTGAGCTAAAAGATGGTGAATTGTGG AATAAATTCTTTGTGCGGATTCTGAATGCCAGTGATGAGTCCACAGTGTCTGTTCTGAGG GAACTTGCAGCAGAAATGAATGGGGTGTTTGACACCACATTCCAAAGTCACCTGAACAAA GCTTTATGGAAGGTAGGGACGTTAATCAGTCCTGGGGCTTTGCTTTTCCAGCAAGATAGG CAGTCAAGTCTCTCACAGATTCCTGCCTAAAACCAATGGTTGTACTGTGTAACAGTGGAC CCGTACATGCTATGATTTAATTTAGGTACACTACTAACACTTTTTTACTTTTTGGCAGAA GTATATTTCTAGGTTACTGGCATTTTCTACTTAACACTGTACCTACTCTTGGCTTTGTTT AACAAAGAACTGTTTTATACTAAATGGACTCCGTATTAATGGGTACCTTATTGCCATTTA ACATATTTGTCTCTATTTTTCCCTGTACTTTTCCCATTTGTAATTTGTGACATGTACCCT TATGATCACTGTATTTTGTAAATAATAAAATTGTATTTGTTAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 238-414, gnl|bosTau2|chr10 (23610274-23610098) | |
| 238-414, gnl|canFam2|chr30 (10395586-10395876) | |
| 238-414, gnl|dasNov1|scaffold_14799 (42439-42182) | |
| 238-414, gnl|echTel1|scaffold_47615 (5521-5252) | |
| 238-414, gnl|galGal2|chr5 (2845062-2844824) | |
| 238-414, gnl|hg17|chr15 (38296903-38297164) | |
| 238-414, gnl|Hg17|chr15 (38296987-38297163) | |
| 238-414, gnl|mm7|chr2 (118379165-118379428) | |
| 238-414, gnl|Mm7|chr2 (118379248-118379427) | |
| 238-414, gnl|monDom2|scaffold_12 (2344256-2343977) | |
| 238-414, gnl|oryCun1|scaffold_210758 (43445-43723) | |
| 238-414, gnl|panTro1|chr16 (38179375-38179636) | |
| 238-414, gnl|rheMac2|chr7 (18550154-18550419) | |
| 238-414, gnl|rn3|chr3 (105009385-105009648) | |
| 509-1064, gnl|bosTau2|chr10 (23607807-23607245) | |
| 509-1064, gnl|canFam2|chr30 (10399254-10398796) | |
| 509-1064, gnl|dasNov1|scaffold_222709 (1640-2101) | |
| 509-1064, gnl|Hg17|chr15 (38300047-38300616) | |
| 509-1064, gnl|hg17|chr6 (131634472-131634938) | |
| 509-1064, gnl|loxAfr1|scaffold_10410 (41071-40585) | |
| 509-1064, gnl|Mm7|chr2 (118381927-118382440) | |
| 509-1064, gnl|oryCun1|scaffold_201438 (95859-96307) | |
| 509-1064, gnl|panTro1|chr5 (134297972-134298438) | |
| 509-1064, gnl|rheMac2|chr4 (132614184-132613705) | |
| 509-1064, gnl|rn3|chr3 (105012572-105012173) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 238-414, gnl|bosTau2|chr10 (23610274-23610098) | |
| 238-414, gnl|canFam2|chr30 (10395586-10395876) | |
| 238-414, gnl|dasNov1|scaffold_14799 (42439-42182) | |
| 238-414, gnl|echTel1|scaffold_47615 (5521-5252) | |
| 238-414, gnl|galGal2|chr5 (2845062-2844824) | |
| 238-414, gnl|hg17|chr15 (38296903-38297164) | |
| 238-414, gnl|Hg17|chr15 (38296987-38297163) | |
| 238-414, gnl|mm7|chr2 (118379165-118379428) | |
| 238-414, gnl|Mm7|chr2 (118379248-118379427) | |
| 238-414, gnl|monDom2|scaffold_12 (2344256-2343977) | |
| 238-414, gnl|oryCun1|scaffold_210758 (43445-43723) | |
| 238-414, gnl|panTro1|chr16 (38179375-38179636) | |
| 238-414, gnl|rheMac2|chr7 (18550154-18550419) | |
| 238-414, gnl|rn3|chr3 (105009385-105009648) | |
| 509-1064, gnl|bosTau2|chr10 (23607807-23607245) | |
| 509-1064, gnl|canFam2|chr30 (10399254-10398796) | |
| 509-1064, gnl|dasNov1|scaffold_222709 (1640-2101) | |
| 509-1064, gnl|Hg17|chr15 (38300047-38300616) | |
| 509-1064, gnl|hg17|chr6 (131634472-131634938) | |
| 509-1064, gnl|loxAfr1|scaffold_10410 (41071-40585) | |
| 509-1064, gnl|Mm7|chr2 (118381927-118382440) | |
| 509-1064, gnl|oryCun1|scaffold_201438 (95859-96307) | |
| 509-1064, gnl|panTro1|chr5 (134297972-134298438) | |
| 509-1064, gnl|rheMac2|chr4 (132614184-132613705) | |
| 509-1064, gnl|rn3|chr3 (105012572-105012173) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| spl (0.429553) | |
| thg (0.380373) | |
| rec (0.346141) | |
| pan (0.23596) | |
| fty (0.17584) | |
| eli (0.151814) | |
| ski (0.146735) | |
| lin (0.145603) | |
| ese (0.126502) | |
| med (0.116252) | |
| ldo (0.0970026) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.429553) | |
| thg (0.380373) | |
| rec (0.346141) | |
| pan (0.23596) | |
| fty (0.17584) | |
| eli (0.151814) | |
| ski (0.146735) | |
| lin (0.145603) | |
| ese (0.126502) | |
| med (0.116252) | |
| ldo (0.0970026) |