Non-Coding RNA Search

Ss1.1-Pig4-TMW8032K21.3

Sequence:


               
               GACTTCTTCCCAGAGTCTGCCTATGTTGCTGCCTGTGAGGCGCACTATAGCACGAAGAAC
CCCAGGGCGATTTATTAAGGTTTCGATGGTTCTGGACGAACAGTTTCTCTAGCTTTGTGC
TCTCAGTTCCCAGTAAAGAACTAGGGAGTGGGTGGGCCTTCTTTCCAGGCAGAGCAGATG
CAACGCCCACCCTGGGGGCTCTGGCAGAGGCAGGCCCATTTATTTGAGTTGCTTACCTAC
TGTAGTCATTTCTGTTACGGATTACTTCCCAGGTCCCTGAACGGCCTCGGACATCTGAGG
CTTGCCACCGAACTCTTTGCCCTTGTCACCTGTGATGGCGGGAAAAGAGTAGCTGTGTTC
ACAATGAAATGTTCCCGAAAGTGTGGATAGGTTGGGCTGTTTCAGTAGATGTTGGAATTT
ATTTGTTAGCAGTAACCACCTTTTTTAGTTGTTAGCATTAAACAAATTTGTTTTGCAAAC
TCTTTTCATTCTTGTGATGAGGCTAAGCAACTCTGTCCAACAAATTTTATTTTGCTTGGA
AGCCATGAAGTAATCCTAGCATATCTTAGAGGGAATTGATATTGATGGCAAAAGAACATT
TACAGCTATACATTTGCTTATTACAGATCCTTTTCTGTAAAACCTTATTTTTGGTGATCT
AAATAAAGCATTGCCTGAATGTTTGAGATTTTACAGCTACACTTGGTTGTGTAATGTTAT
AATTCCCTTTCTGTAAAATGTTATTTTTGGTGATCTAAAATAAATGATTTGGGAGTTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTTCTTCCCAGAGTCTGCCTATGTTGCTGCCTGTGAGGCGCACTATAGCACGAAGAAC
CCCAGGGCGATTTATTAAGGTTTCGATGGTTCTGGACGAACAGTTTCTCTAGCTTTGTGC
TCTCAGTTCCCAGTAAAGAACTAGGGAGTGGGTGGGCCTTCTTTCCAGGCAGAGCAGATG
CAACGCCCACCCTGGGGGCTCTGGCAGAGGCAGGCCCATTTATTTGAGTTGCTTACCTAC
TGTAGTCATTTCTGTTACGGATTACTTCCCAGGTCCCTGAACGGCCTCGGACATCTGAGG
CTTGCCACCGAACTCTTTGCCCTTGTCACCTGTGATGGCGGGAAAAGAGTAGCTGTGTTC
ACAATGAAATGTTCCCGAAAGTGTGGATAGGTTGGGCTGTTTCAGTAGATGTTGGAATTT
ATTTGTTAGCAGTAACCACCTTTTTTAGTTGTTAGCATTAAACAAATTTGTTTTGCAAAC
TCTTTTCATTCTTGTGATGAGGCTAAGCAACTCTGTCCAACAAATTTTATTTTGCTTGGA
AGCCATGAAGTAATCCTAGCATATCTTAGAGGGAATTGATATTGATGGCAAAAGAACATT
TACAGCTATACATTTGCTTATTACAGATCCTTTTCTGTAAAACCTTATTTTTGGTGATCT
AAATAAAGCATTGCCTGAATGTTTGAGATTTTACAGCTACACTTGGTTGTGTAATGTTAT
AATTCCCTTTCTGTAAAATGTTATTTTTGGTGATCTAAAATAAATGATTTGGGAGTTCCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-769, gnl|bosTau2|chr2 (54831007-54831755)
               

               
               1-769, gnl|Hg17|chr2 (234556854-234556106)
               

               
               1-769, gnl|Mm7|chrX (163429308-163428496)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-769, gnl|bosTau2|chr2 (54831007-54831755)
               

               
               1-769, gnl|Hg17|chr2 (234556854-234556106)
               

               
               1-769, gnl|Mm7|chrX (163429308-163428496)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               sug (0.381874)
               

               
               cmu (0.372787)
               

               
               che (0.272628)
               

               
               cbr (0.255951)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.381874)
               

               
               cmu (0.372787)
               

               
               che (0.272628)
               

               
               cbr (0.255951)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	1-769, gnl\|bosTau2\|chr2 (54831007-54831755)
	1-769, gnl\|Hg17\|chr2 (234556854-234556106)
	1-769, gnl\|Mm7\|chrX (163429308-163428496)

	sug (0.381874)
	cmu (0.372787)
	che (0.272628)
	cbr (0.255951)
	bla (0.248694)
	tra (0.246184)
	sto (0.179824)
	sin (0.174948)
	duo (0.172801)
	cje (0.165235)
	fco (0.157208)
	fat (0.147427)
	lin (0.145603)
	ste (0.135208)
	cty (0.10408)
	nbm (0.0993246)
	jej (0.0989218)