Non-Coding RNA Search

Ss1.1-Pig4-TMW8032L07.3

Sequence:


               
               CCCATCCCCAGAAGCCTCCCCACCAGCCCTGGAACCGGAAAAGCCTCCAGCTCCTGAGTC
ATCGGGCACCGAGGAGCTGCCCGAGGATGGGGAGCCTGATGCAGCGGAGCTCCGCCGCCG
TCGCCTACAGAAGTTGGAGTCCCCGGTTGCCCACTGACACTGCCCCAGTCCTGGCCCCTG
CCCCCACTCTTGAGCAGCCCTCTGCTGGAACACATCCTGCCACCAAGTGCCAGCTCCCTC
TTTCTGCACCAGGGAGTAGCGACCCCCAGTTCTGAGGCAGAGGAGGTGGCACCCTAGACC
AAGTGGAAAGGGGCCGAGGGCTTTCTCCAGCCCGTACAGTCCCGGGCAGCCATGGGGATC
CGGGTCATTCCAGCCTTCCTCTCCAGCTCTTCAGCCGTGCCGTGTTCTGCTGAGGCCCTG
AAGGCAGCAAAGTGCTGCCTGGAGAAGCCCTCTGACCCCACCCGACCCCTTTCTGGGAGA
AGGGGCAGCCCCTCCGAGCCCCCCTTGTGTGTGGAGTCACGCTGCAGCACCCAACAGTAT
TAGCTCCCGTTCCCAAGTGTGGACTCAAGGGCTGGAGGTGGGCCAGGAACCTGCTCCACG
GCCCACCCACCGAGACTGGTACCCATGTCCTTTTCTTACCCTAGACTCCCCAGAAGCCTT
TTGTGGTGGTGGCTGTGCCCCTTGTGCCCTGTGGCATTTCCATGTCTTACTGGCAACCAC
ATAACTCAGGGAAAGGAGTGTCTGGGGTGGAGGAGCAGGTGGGCAGCACTGAGGGGCCCT
GCTCTGCCCCTCCCCCCCAGGCCCTTTTCTCCCTGCAGTTTGTCTAAGGGGAGACTGTCC
CTGGTCTCACCCAGCAGCCACTGCAGCCTCACTCCAGGCTGAGGGCTCGTGTGTGTGCGT
GCGCGCTTCTGAACCACTGCAAGCCCCAGAACCAGCGGAAGGCCACTTCTTAACTTAGTT
AAGAATTTTTCTTGAGTTTAGAAGAACTGGTATTACTTCCTTGCTACTGTCTTTTGGCTT
AAATTTTGTCTTTGAATTTGAATGCTTGACCCCAGGAAAAGGTCGCAGGAGTGCCAAGCT
CCTGGTCTTTCCAGTTGAGAAAAGGCTCTGGGCCAGGTAGGGACCACAGGAGCCAAGGCC
TTGCCTGCCCCTGTCTTTTCCCCCTTGGTTTTGTGTTACAAGAGTTGCTGGAGACAGTTT
CAGATGATTATTTAATTTGTAAATATTGTACAAATTTTAATAGCTTAAATTGTATATACA
GCCAAATAAAAACTTGCATTAATGAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCATCCCCAGAAGCCTCCCCACCAGCCCTGGAACCGGAAAAGCCTCCAGCTCCTGAGTC
ATCGGGCACCGAGGAGCTGCCCGAGGATGGGGAGCCTGATGCAGCGGAGCTCCGCCGCCG
TCGCCTACAGAAGTTGGAGTCCCCGGTTGCCCACTGACACTGCCCCAGTCCTGGCCCCTG
CCCCCACTCTTGAGCAGCCCTCTGCTGGAACACATCCTGCCACCAAGTGCCAGCTCCCTC
TTTCTGCACCAGGGAGTAGCGACCCCCAGTTCTGAGGCAGAGGAGGTGGCACCCTAGACC
AAGTGGAAAGGGGCCGAGGGCTTTCTCCAGCCCGTACAGTCCCGGGCAGCCATGGGGATC
CGGGTCATTCCAGCCTTCCTCTCCAGCTCTTCAGCCGTGCCGTGTTCTGCTGAGGCCCTG
AAGGCAGCAAAGTGCTGCCTGGAGAAGCCCTCTGACCCCACCCGACCCCTTTCTGGGAGA
AGGGGCAGCCCCTCCGAGCCCCCCTTGTGTGTGGAGTCACGCTGCAGCACCCAACAGTAT
TAGCTCCCGTTCCCAAGTGTGGACTCAAGGGCTGGAGGTGGGCCAGGAACCTGCTCCACG
GCCCACCCACCGAGACTGGTACCCATGTCCTTTTCTTACCCTAGACTCCCCAGAAGCCTT
TTGTGGTGGTGGCTGTGCCCCTTGTGCCCTGTGGCATTTCCATGTCTTACTGGCAACCAC
ATAACTCAGGGAAAGGAGTGTCTGGGGTGGAGGAGCAGGTGGGCAGCACTGAGGGGCCCT
GCTCTGCCCCTCCCCCCCAGGCCCTTTTCTCCCTGCAGTTTGTCTAAGGGGAGACTGTCC
CTGGTCTCACCCAGCAGCCACTGCAGCCTCACTCCAGGCTGAGGGCTCGTGTGTGTGCGT
GCGCGCTTCTGAACCACTGCAAGCCCCAGAACCAGCGGAAGGCCACTTCTTAACTTAGTT
AAGAATTTTTCTTGAGTTTAGAAGAACTGGTATTACTTCCTTGCTACTGTCTTTTGGCTT
AAATTTTGTCTTTGAATTTGAATGCTTGACCCCAGGAAAAGGTCGCAGGAGTGCCAAGCT
CCTGGTCTTTCCAGTTGAGAAAAGGCTCTGGGCCAGGTAGGGACCACAGGAGCCAAGGCC
TTGCCTGCCCCTGTCTTTTCCCCCTTGGTTTTGTGTTACAAGAGTTGCTGGAGACAGTTT
CAGATGATTATTTAATTTGTAAATATTGTACAAATTTTAATAGCTTAAATTGTATATACA
GCCAAATAAAAACTTGCATTAATGAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               47-162, - strand, RNAz p=0.745197
               

               
               546-661, - strand, RNAz p=0.668981
               

               
               770-927, - strand, RNAz p=0.999999
               

               
               1046-1237, + strand, RNAz p=0.948818

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               47-162, - strand, RNAz p=0.745197
               

               
               546-661, - strand, RNAz p=0.668981
               

               
               770-927, - strand, RNAz p=0.999999
               

               
               1046-1237, + strand, RNAz p=0.948818

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               1235-1310, + strand, RNAmicro p=0.942897
               

               
               1143-1208, + strand, RNAmicro p=0.934153

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1235-1310, + strand, RNAmicro p=0.942897
               

               
               1143-1208, + strand, RNAmicro p=0.934153

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_004927, -
               

               
               5' of NM_172230, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004927, -
               

               
               5' of NM_172230, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               47-1285, gnl|bosTau2|chr29 (34250709-34249483)
               

               
               47-1285, gnl|Hg17|chr11 (64652540-64651327)
               

               
               47-1285, gnl|Mm7|chr19 (5947350-5948518)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-1285, gnl|bosTau2|chr29 (34250709-34249483)
               

               
               47-1285, gnl|Hg17|chr11 (64652540-64651327)
               

               
               47-1285, gnl|Mm7|chr19 (5947350-5948518)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               cly (0.241284)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.241284)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	47-162, - strand, RNAz p=0.745197
	546-661, - strand, RNAz p=0.668981
	770-927, - strand, RNAz p=0.999999
	1046-1237, + strand, RNAz p=0.948818

	1235-1310, + strand, RNAmicro p=0.942897
	1143-1208, + strand, RNAmicro p=0.934153

	47-1285, gnl\|bosTau2\|chr29 (34250709-34249483)
	47-1285, gnl\|Hg17\|chr11 (64652540-64651327)
	47-1285, gnl\|Mm7\|chr19 (5947350-5948518)

	cly (0.241284)
	tes (0.207814)
	fcc (0.197785)
	cmu (0.186393)
	fty (0.17584)
	ill (0.175593)
	duo (0.172801)
	fhi (0.169578)
	cje (0.165235)
	csp (0.161186)
	spl (0.143184)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	nca (0.136874)
	cov (0.132153)
	ese (0.126502)
	ebs (0.118301)
	jca (0.11396)
	jej (0.0989218)