Ss1.1-Pig4-TMW8032L12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGAAGAAGGAGCGGGCCCTCGCCACTCTGTCTCAATCCCTCGCGCTCTCTCGGGCAACA TGGCGGGCGTGGAGGAGGCGGCGTCCTCCGGGAGCCACCTGAATGGCGACCTGGATCCAG ACGACAGGGAGGAGGGAGCTGCTTCTACGGCTGAGGAGGCAGCTAAGAAAAAAAGACGGA AGAAGAAGAAGACTAAAGGGGCTGCCACAGCAGGGCAACAGGAACCTGAAAAGGAATCAG GAGGCTCGATTGATGAGGTAACAAGACAGTTGGAAACACAAGCATTGGACGAGAAAGAAA GAGATGATGACGATGAAGATGGAGATGGTGATGGAGATGGAGCAACTGGAAAGAAAAAGA AAAAGAAGAAGAAGAAGAGAGGACCAAAAGTTCAAACAGACCCTCCCTCAGTTCCAATAT GTGACCTGTATCCTAATGGTGTATTTCCCAAAGGACAAGAATGCGAGTACCCACCCACAC AAGATGGGCGAACAGCTGCTTGGAGAACTACAAGTGAAGAAAAGAAAGCATTAGATCAAG CAAGTGAAGAGATTTGGAATGATTTTCGAGAAGCTGCAGAGGCACATCGACAGGTTAGAA AATATGTTATGAGCTGGATCAAGCCTGGGATGACAATGATAGAAATCTGTGAAAAGTTGG AAGACTGTTCACGAAAGCTAATAAAAGAGAATGGATTAAATGCAGGCCTGGCATTTCCTA CTGGGTGTTCTCTAAATAATTGTGCTGCCCATTATACTCCCAATGCTGGTGACACAACAG TATTGCAATATGATGACATCTGTAAGATAGACTTTGGAACACATATAAGTGGTAGGATTA TTGACTGTGCTTTTACTGTCACTTTTAATCCCAAATATGATACATTATTAAAAGCTGTAA AAGATGCCACTAACACTGGAATAAAGTGTGCTGGAATTGATGTCCGTCTCTGTGATGTTG GTGAGGCCATCCAAGAGGTTATGGAGTCCTATGAAGTTGAAATCGATGGGAAGACATATC AAGTGAAACCAATCCGTAATCTAAATGGACATTCAATTGGGCCATATAGAATACATGCTG GGAAAACAGTGCCCATTGTGAAAGGAGGAGAGGCAACGAGAATGGAGGAGGGAGAAGTAT ATGCCATTGAAACCTTTGGTAGCACAGGCAAAGGCATTGTTCATGATGATATGGAATGTT CACATTACATGAAAAATTTTGATGTTGGACATGTGCCAATAAGGCTTCCAAGAACGAAAC ACTTGTTAAATGTCATCAATGAAAACTTTGGCACCCTTGCCTTCTGTCGCAGATGGCTGG ATCGCTTGGGAGAAAGTAAATACTTGATGGCTCTGAAGAATCTGTGTGACTTGGGCATTG TAGATCCATATCCACCATTATGTGACATTAAAGGATCATATACAGCACAGTTTGAACATA CCATACTTTTGCGTCCAACATGTAAAGAAGTTGTCAGCAGAGGAGATGACTATTAAACTT AGTCCAAAGCCACCACAACATCTTTTATTTTCTAAGCTTTGTTGGAATACATTATACCAG AATAATTTTCGACATGTTGTCTGTTTAACAGTGGACTTATGTAATACTTTTATCCATGTT TAAAAAGGAAGGAATTTGATCAAAGGCAGACCATTTAATGTAATTAACCAAGGAAAAAGC TTTCAGGACTTTGAAATGTTAACTGTTTCTCCTCTGTCTAGGAAATGGTATAAAACTCCA ATTAGTTAAGAATGACATACACATTTTGTTTCAAACACCTAAGAGATGCTTTTCAGATAT TTATATTGCCATATTCTTAATTGAATGCTTTGAATGACTACATCCAGTTCTGCACCTATA CCCTCTGGTATTGCTTTTTAACCTTCCTGGAATCCATTTTCTAAAAAATAAAGACATTTT CAGATCTAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGAAGAAGGAGCGGGCCCTCGCCACTCTGTCTCAATCCCTCGCGCTCTCTCGGGCAACA TGGCGGGCGTGGAGGAGGCGGCGTCCTCCGGGAGCCACCTGAATGGCGACCTGGATCCAG ACGACAGGGAGGAGGGAGCTGCTTCTACGGCTGAGGAGGCAGCTAAGAAAAAAAGACGGA AGAAGAAGAAGACTAAAGGGGCTGCCACAGCAGGGCAACAGGAACCTGAAAAGGAATCAG GAGGCTCGATTGATGAGGTAACAAGACAGTTGGAAACACAAGCATTGGACGAGAAAGAAA GAGATGATGACGATGAAGATGGAGATGGTGATGGAGATGGAGCAACTGGAAAGAAAAAGA AAAAGAAGAAGAAGAAGAGAGGACCAAAAGTTCAAACAGACCCTCCCTCAGTTCCAATAT GTGACCTGTATCCTAATGGTGTATTTCCCAAAGGACAAGAATGCGAGTACCCACCCACAC AAGATGGGCGAACAGCTGCTTGGAGAACTACAAGTGAAGAAAAGAAAGCATTAGATCAAG CAAGTGAAGAGATTTGGAATGATTTTCGAGAAGCTGCAGAGGCACATCGACAGGTTAGAA AATATGTTATGAGCTGGATCAAGCCTGGGATGACAATGATAGAAATCTGTGAAAAGTTGG AAGACTGTTCACGAAAGCTAATAAAAGAGAATGGATTAAATGCAGGCCTGGCATTTCCTA CTGGGTGTTCTCTAAATAATTGTGCTGCCCATTATACTCCCAATGCTGGTGACACAACAG TATTGCAATATGATGACATCTGTAAGATAGACTTTGGAACACATATAAGTGGTAGGATTA TTGACTGTGCTTTTACTGTCACTTTTAATCCCAAATATGATACATTATTAAAAGCTGTAA AAGATGCCACTAACACTGGAATAAAGTGTGCTGGAATTGATGTCCGTCTCTGTGATGTTG GTGAGGCCATCCAAGAGGTTATGGAGTCCTATGAAGTTGAAATCGATGGGAAGACATATC AAGTGAAACCAATCCGTAATCTAAATGGACATTCAATTGGGCCATATAGAATACATGCTG GGAAAACAGTGCCCATTGTGAAAGGAGGAGAGGCAACGAGAATGGAGGAGGGAGAAGTAT ATGCCATTGAAACCTTTGGTAGCACAGGCAAAGGCATTGTTCATGATGATATGGAATGTT CACATTACATGAAAAATTTTGATGTTGGACATGTGCCAATAAGGCTTCCAAGAACGAAAC ACTTGTTAAATGTCATCAATGAAAACTTTGGCACCCTTGCCTTCTGTCGCAGATGGCTGG ATCGCTTGGGAGAAAGTAAATACTTGATGGCTCTGAAGAATCTGTGTGACTTGGGCATTG TAGATCCATATCCACCATTATGTGACATTAAAGGATCATATACAGCACAGTTTGAACATA CCATACTTTTGCGTCCAACATGTAAAGAAGTTGTCAGCAGAGGAGATGACTATTAAACTT AGTCCAAAGCCACCACAACATCTTTTATTTTCTAAGCTTTGTTGGAATACATTATACCAG AATAATTTTCGACATGTTGTCTGTTTAACAGTGGACTTATGTAATACTTTTATCCATGTT TAAAAAGGAAGGAATTTGATCAAAGGCAGACCATTTAATGTAATTAACCAAGGAAAAAGC TTTCAGGACTTTGAAATGTTAACTGTTTCTCCTCTGTCTAGGAAATGGTATAAAACTCCA ATTAGTTAAGAATGACATACACATTTTGTTTCAAACACCTAAGAGATGCTTTTCAGATAT TTATATTGCCATATTCTTAATTGAATGCTTTGAATGACTACATCCAGTTCTGCACCTATA CCCTCTGGTATTGCTTTTTAACCTTCCTGGAATCCATTTTCTAAAAAATAAAGACATTTT CAGATCTAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 59-178, + strand, RNAz p=0.85822 | |
| 716-833, + strand, RNAz p=0.534297 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 59-178, + strand, RNAz p=0.85822 | |
| 716-833, + strand, RNAz p=0.534297 |
| Aligned organism(s): 79 entry(ies) | More info |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
| 1-210, gnl|bosTau2|chr5 (18387659-18387450) | |
| 1-210, gnl|Hg17|chr12 (94370364-94370574) | |
| 1-210, gnl|Mm7|chr10 (93448672-93448443) | |
| 385-488, gnl|bosTau2|chr5 (18371707-18371604) | |
| 385-488, gnl|canFam2|chr15 (38389872-38390011) | |
| 385-488, gnl|canFam2|chr3 (15103866-15103788) | |
| 385-488, gnl|danRer3|chr24 (13429599-13429468) | |
| 385-488, gnl|danRer3|chr24 (13429503-13429567) | |
| 385-488, gnl|dasNov1|scaffold_67975 (5574-5678) | |
| 385-488, gnl|dasNov1|scaffold_67975 (5676-5591) | |
| 385-488, gnl|echTel1|scaffold_109354 (193-326) | |
| 385-488, gnl|echTel1|scaffold_109354 (304-226) | |
| 385-488, gnl|fr1|chrUn (135395841-135395966) | |
| 385-488, gnl|fr1|chrUn (135395965-135395884) | |
| 385-488, gnl|galGal2|chr1 (42360543-42360669) | |
| 385-488, gnl|galGal2|chr1 (42360662-42360577) | |
| 385-488, gnl|hg17|chr12 (94382108-94382247) | |
| 385-488, gnl|Hg17|chr12 (94382123-94382226) | |
| 385-488, gnl|hg17|chr2 (146418563-146418647) | |
| 385-488, gnl|loxAfr1|scaffold_59726 (13274-13413) | |
| 385-488, gnl|loxAfr1|scaffold_59726 (13386-13308) | |
| 385-488, gnl|mm7|chr10 (93438563-93438425) | |
| 385-488, gnl|Mm7|chr10 (93438547-93438444) | |
| 385-488, gnl|mm7|chr11 (22711615-22711699) | |
| 385-488, gnl|monDom2|scaffold_41 (20297538-20297449) | |
| 385-488, gnl|monDom2|scaffold_41 (20297446-20297531) | |
| 385-488, gnl|oryCun1|scaffold_137387 (3662-3577) | |
| 385-488, gnl|oryCun1|scaffold_170908 (55220-55081) | |
| 385-488, gnl|panTro1|chr10 (96695176-96695315) | |
| 385-488, gnl|panTro1|chr13 (35458963-35459047) | |
| 385-488, gnl|rheMac2|chr11 (96708117-96708256) | |
| 385-488, gnl|rheMac2|chr11 (96708229-96708151) | |
| 385-488, gnl|rn3|chr18 (51924264-51924179) | |
| 385-488, gnl|rn3|chr7 (31012972-31012832) | |
| 385-488, gnl|tetNig1|chr19 (1137271-1137149) | |
| 385-488, gnl|tetNig1|chr19 (1137155-1137240) | |
| 385-488, gnl|xenTro1|scaffold_1364 (142569-142439) | |
| 385-488, gnl|xenTro1|scaffold_1364 (142450-142535) | |
| 649-833, gnl|bosTau2|chr5 (18364621-18364437) | |
| 649-833, gnl|canFam2|chr3 (15104221-15104079) | |
| 649-833, gnl|danRer3|chr24 (13427271-13427410) | |
| 649-833, gnl|dasNov1|scaffold_67975 (6025-5883) | |
| 649-833, gnl|echTel1|scaffold_311924 (97871-98013) | |
| 649-833, gnl|fr1|chrUn (135396806-135396664) | |
| 649-833, gnl|galGal2|chr1 (42365808-42365666) | |
| 649-833, gnl|Hg17|chr12 (94391200-94391384) | |
| 649-833, gnl|hg17|chr2 (146418233-146418375) | |
| 649-833, gnl|loxAfr1|scaffold_16785 (60770-60913) | |
| 649-833, gnl|Mm7|chr10 (93429204-93429020) | |
| 649-833, gnl|mm7|chr11 (22711272-22711414) | |
| 649-833, gnl|monDom2|scaffold_41 (20297098-20297240) | |
| 649-833, gnl|oryCun1|scaffold_98893 (4100-3958) | |
| 649-833, gnl|panTro1|chr13 (35458633-35458775) | |
| 649-833, gnl|rheMac2|chr12 (9375298-9375440) | |
| 649-833, gnl|rn3|chr18 (51924612-51924470) | |
| 649-833, gnl|tetNig1|chr19 (1136615-1136757) | |
| 649-833, gnl|xenTro1|scaffold_1364 (141104-141246) | |
| 1022-1128, gnl|bosTau2|chr5 (18359112-18359006) | |
| 1022-1128, gnl|canFam2|chr3 (15104512-15104408) | |
| 1022-1128, gnl|danRer3|chr24 (13425026-13425130) | |
| 1022-1128, gnl|dasNov1|scaffold_67975 (6313-6209) | |
| 1022-1128, gnl|echTel1|scaffold_311924 (93891-93995) | |
| 1022-1128, gnl|fr1|chrUn (135397385-135397277) | |
| 1022-1128, gnl|galGal2|chr1 (42366745-42366637) | |
| 1022-1128, gnl|Hg17|chr12 (94408137-94408243) | |
| 1022-1128, gnl|hg17|chr2 (146417930-146418038) | |
| 1022-1128, gnl|loxAfr1|scaffold_16785 (56115-56219) | |
| 1022-1128, gnl|Mm7|chr10 (93421940-93421834) | |
| 1022-1128, gnl|mm7|chr11 (22710976-22711084) | |
| 1022-1128, gnl|monDom2|scaffold_41 (20296802-20296910) | |
| 1022-1128, gnl|oryCun1|scaffold_98893 (4373-4265) | |
| 1022-1128, gnl|panTro1|chr13 (35458330-35458438) | |
| 1022-1128, gnl|rheMac2|chr12 (9374995-9375103) | |
| 1022-1128, gnl|rn3|chr18 (51924908-51924800) | |
| 1022-1128, gnl|tetNig1|chr19 (1135942-1136050) | |
| 1022-1128, gnl|xenTro1|scaffold_1364 (140789-140898) | |
| 1242-1927, gnl|bosTau2|chr5 (18357705-18357034) | |
| 1242-1927, gnl|Hg17|chr12 (94409894-94410585) | |
| 1242-1927, gnl|Mm7|chr10 (93420509-93419833) |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-210, gnl|bosTau2|chr5 (18387659-18387450) | |
| 1-210, gnl|Hg17|chr12 (94370364-94370574) | |
| 1-210, gnl|Mm7|chr10 (93448672-93448443) | |
| 385-488, gnl|bosTau2|chr5 (18371707-18371604) | |
| 385-488, gnl|canFam2|chr15 (38389872-38390011) | |
| 385-488, gnl|canFam2|chr3 (15103866-15103788) | |
| 385-488, gnl|danRer3|chr24 (13429599-13429468) | |
| 385-488, gnl|danRer3|chr24 (13429503-13429567) | |
| 385-488, gnl|dasNov1|scaffold_67975 (5574-5678) | |
| 385-488, gnl|dasNov1|scaffold_67975 (5676-5591) | |
| 385-488, gnl|echTel1|scaffold_109354 (193-326) | |
| 385-488, gnl|echTel1|scaffold_109354 (304-226) | |
| 385-488, gnl|fr1|chrUn (135395841-135395966) | |
| 385-488, gnl|fr1|chrUn (135395965-135395884) | |
| 385-488, gnl|galGal2|chr1 (42360543-42360669) | |
| 385-488, gnl|galGal2|chr1 (42360662-42360577) | |
| 385-488, gnl|hg17|chr12 (94382108-94382247) | |
| 385-488, gnl|Hg17|chr12 (94382123-94382226) | |
| 385-488, gnl|hg17|chr2 (146418563-146418647) | |
| 385-488, gnl|loxAfr1|scaffold_59726 (13274-13413) | |
| 385-488, gnl|loxAfr1|scaffold_59726 (13386-13308) | |
| 385-488, gnl|mm7|chr10 (93438563-93438425) | |
| 385-488, gnl|Mm7|chr10 (93438547-93438444) | |
| 385-488, gnl|mm7|chr11 (22711615-22711699) | |
| 385-488, gnl|monDom2|scaffold_41 (20297538-20297449) | |
| 385-488, gnl|monDom2|scaffold_41 (20297446-20297531) | |
| 385-488, gnl|oryCun1|scaffold_137387 (3662-3577) | |
| 385-488, gnl|oryCun1|scaffold_170908 (55220-55081) | |
| 385-488, gnl|panTro1|chr10 (96695176-96695315) | |
| 385-488, gnl|panTro1|chr13 (35458963-35459047) | |
| 385-488, gnl|rheMac2|chr11 (96708117-96708256) | |
| 385-488, gnl|rheMac2|chr11 (96708229-96708151) | |
| 385-488, gnl|rn3|chr18 (51924264-51924179) | |
| 385-488, gnl|rn3|chr7 (31012972-31012832) | |
| 385-488, gnl|tetNig1|chr19 (1137271-1137149) | |
| 385-488, gnl|tetNig1|chr19 (1137155-1137240) | |
| 385-488, gnl|xenTro1|scaffold_1364 (142569-142439) | |
| 385-488, gnl|xenTro1|scaffold_1364 (142450-142535) | |
| 649-833, gnl|bosTau2|chr5 (18364621-18364437) | |
| 649-833, gnl|canFam2|chr3 (15104221-15104079) | |
| 649-833, gnl|danRer3|chr24 (13427271-13427410) | |
| 649-833, gnl|dasNov1|scaffold_67975 (6025-5883) | |
| 649-833, gnl|echTel1|scaffold_311924 (97871-98013) | |
| 649-833, gnl|fr1|chrUn (135396806-135396664) | |
| 649-833, gnl|galGal2|chr1 (42365808-42365666) | |
| 649-833, gnl|Hg17|chr12 (94391200-94391384) | |
| 649-833, gnl|hg17|chr2 (146418233-146418375) | |
| 649-833, gnl|loxAfr1|scaffold_16785 (60770-60913) | |
| 649-833, gnl|Mm7|chr10 (93429204-93429020) | |
| 649-833, gnl|mm7|chr11 (22711272-22711414) | |
| 649-833, gnl|monDom2|scaffold_41 (20297098-20297240) | |
| 649-833, gnl|oryCun1|scaffold_98893 (4100-3958) | |
| 649-833, gnl|panTro1|chr13 (35458633-35458775) | |
| 649-833, gnl|rheMac2|chr12 (9375298-9375440) | |
| 649-833, gnl|rn3|chr18 (51924612-51924470) | |
| 649-833, gnl|tetNig1|chr19 (1136615-1136757) | |
| 649-833, gnl|xenTro1|scaffold_1364 (141104-141246) | |
| 1022-1128, gnl|bosTau2|chr5 (18359112-18359006) | |
| 1022-1128, gnl|canFam2|chr3 (15104512-15104408) | |
| 1022-1128, gnl|danRer3|chr24 (13425026-13425130) | |
| 1022-1128, gnl|dasNov1|scaffold_67975 (6313-6209) | |
| 1022-1128, gnl|echTel1|scaffold_311924 (93891-93995) | |
| 1022-1128, gnl|fr1|chrUn (135397385-135397277) | |
| 1022-1128, gnl|galGal2|chr1 (42366745-42366637) | |
| 1022-1128, gnl|Hg17|chr12 (94408137-94408243) | |
| 1022-1128, gnl|hg17|chr2 (146417930-146418038) | |
| 1022-1128, gnl|loxAfr1|scaffold_16785 (56115-56219) | |
| 1022-1128, gnl|Mm7|chr10 (93421940-93421834) | |
| 1022-1128, gnl|mm7|chr11 (22710976-22711084) | |
| 1022-1128, gnl|monDom2|scaffold_41 (20296802-20296910) | |
| 1022-1128, gnl|oryCun1|scaffold_98893 (4373-4265) | |
| 1022-1128, gnl|panTro1|chr13 (35458330-35458438) | |
| 1022-1128, gnl|rheMac2|chr12 (9374995-9375103) | |
| 1022-1128, gnl|rn3|chr18 (51924908-51924800) | |
| 1022-1128, gnl|tetNig1|chr19 (1135942-1136050) | |
| 1022-1128, gnl|xenTro1|scaffold_1364 (140789-140898) | |
| 1242-1927, gnl|bosTau2|chr5 (18357705-18357034) | |
| 1242-1927, gnl|Hg17|chr12 (94409894-94410585) | |
| 1242-1927, gnl|Mm7|chr10 (93420509-93419833) |
| Expressed library(ies): 38 entry(ies) | More info |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
| mgp (1.38408) | |
| tes (0.831255) | |
| lin (0.582411) | |
| kid (0.518941) | |
| fco (0.471624) | |
| ste (0.405625) | |
| col (0.390016) | |
| bla (0.373042) | |
| gul (0.355177) | |
| rec (0.346141) | |
| cbl (0.344392) | |
| mcp (0.341297) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| nca (0.273748) | |
| ese (0.253004) | |
| spc (0.226732) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sin (0.174948) | |
| duo (0.172801) | |
| lun (0.150489) | |
| isp (0.150376) | |
| fat (0.147427) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (1.38408) | |
| tes (0.831255) | |
| lin (0.582411) | |
| kid (0.518941) | |
| fco (0.471624) | |
| ste (0.405625) | |
| col (0.390016) | |
| bla (0.373042) | |
| gul (0.355177) | |
| rec (0.346141) | |
| cbl (0.344392) | |
| mcp (0.341297) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| nca (0.273748) | |
| ese (0.253004) | |
| spc (0.226732) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sin (0.174948) | |
| duo (0.172801) | |
| lun (0.150489) | |
| isp (0.150376) | |
| fat (0.147427) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |