Non-Coding RNA Search

Ss1.1-Pig4-TMW8032L16.3

Sequence:


               
               TGGGGTATAGCTTGATGTAGGATCTCAGTTCTCAGATCATGAATTGAACCTGGGGTGCAG
TGGTGAAAGTGCTGTGTCCTAACCACTAGACCACTGGGGAACTCACAATAATCTGGTTTA
ATCAAAGCAATTTAGATTTGGATTTTGAAATGACCCTTCTTTGCCATGGAAGCTATGGAC
TTCACACTATGAAAACAGGTGGCATACAGATTGTAGCTAGTTTCTTTGTTTTCTTATCAC
TGAAGATGACCAGGTGGAGAGAGAGACCAACAGTTTTTCTGATTTCTCTTTTTCTTCTAT
TCCTTTCTAAAAACCAAACTCACTGTGACCTCAGTCTTGAGGATTCAAACTGACCAATAG
AGAAAGGAGCACAGACAGAAAAGAAAAGAATACAAAATTCGAGAAGATCGGAGATGAAGA
AAACGTACAAAATTATATATATATTTATATATATAATAACATGACATATCTATGTACAAC
ATGTCTGGGACAGTTGAGGAAACTATACAAGGATGTTCAGCATTTCCCCTTCCCACATGG
ACCTTAGACTAAGGAAGACAGTATGAGCAAATGGAGCAAGAAACACAAAAATTATATACA
ATTACAAGGGACAGTCAAGGAGTTTGGGAGCCAGGGAATCATGGGATCCTGCTCTCTCCA
TTCCTCCCTCACCAACTTTTTCCTATCCAATCTGAAAGATGGCCTGAGAAGTGAATGGCT
GGTCAGGAAAGACGTACAGACACACTCCATCTCCCCACAGGAGCATCAGCAAGTTCATCA
GGCATTCTCATTGGGCCAGATGTGTGGCATATCAGAATTGGTGAGGTGAGAAGGCAAGAG
AGGATTACAGAAGCTTCCTCTCTTCAACAGCCAGTTCTTACCCTGGCGCACTCTGCCTAT
AACTAGCAGGCCACATTCAGTCAGTCGGCCAAGCCAGGGAAAACTAGATTGAGGATGCTG
GCCACCTGCAACCCCTTTCCTCCACCTGGTTCAAGATCAGCACTGCTACTTCTCAGTGCC
CAGGAGCGAGGTTACTGAGCTCTAGGAGGGCAGAGATTTCTCAGTTTTCCTTCTCTTTCT
CCCTAACCACCTTTCCCCGCTTCCTCCGAGGTGAGTCATCTCCTGAGAACCTGCTGCTCC
AGCCTTACTGCAGTATCACTAAGCCCCGAAGCCTTGCTCAGTTTATCCCTTTTCTTGTCT
CCCTAACAATACACCTGGCAGCTGGTAACATCTAAAATGTGGGACTCCACATGGGCATGA
CTGAGCATGTTTCTTCAGGCCATAGCTTGGCTGCCAGAGCAGCTTTTTAGCAGCAAGGGC
CTAGACTGTAGGCCAGGAAAGCAGGTGGGGGCAGAGGCAAGAAGCTTTCATGGCTGGCTT
CTCAGAATTTTTTTTCTTGATCAAGACCATGACACTTATAAGACCCTCCTGCTTGAATTT
ATAACCCCCAAACCCCAACTTCTCTTCCCATGTCGTCTTCAAATGGTTCCCCTCTGTAGG
CTCACCCATGGGCCCTCCTCACAAGAGTTTTGCAGGATTTCAGAATCAGAATCAACTTAT
CTAAATTCAACTCTATTTTACAGAGGAGGAAATAGAAATCCAGAGAGGTTAAATTATTTG
ACCAAGGTTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGTATAGCTTGATGTAGGATCTCAGTTCTCAGATCATGAATTGAACCTGGGGTGCAG
TGGTGAAAGTGCTGTGTCCTAACCACTAGACCACTGGGGAACTCACAATAATCTGGTTTA
ATCAAAGCAATTTAGATTTGGATTTTGAAATGACCCTTCTTTGCCATGGAAGCTATGGAC
TTCACACTATGAAAACAGGTGGCATACAGATTGTAGCTAGTTTCTTTGTTTTCTTATCAC
TGAAGATGACCAGGTGGAGAGAGAGACCAACAGTTTTTCTGATTTCTCTTTTTCTTCTAT
TCCTTTCTAAAAACCAAACTCACTGTGACCTCAGTCTTGAGGATTCAAACTGACCAATAG
AGAAAGGAGCACAGACAGAAAAGAAAAGAATACAAAATTCGAGAAGATCGGAGATGAAGA
AAACGTACAAAATTATATATATATTTATATATATAATAACATGACATATCTATGTACAAC
ATGTCTGGGACAGTTGAGGAAACTATACAAGGATGTTCAGCATTTCCCCTTCCCACATGG
ACCTTAGACTAAGGAAGACAGTATGAGCAAATGGAGCAAGAAACACAAAAATTATATACA
ATTACAAGGGACAGTCAAGGAGTTTGGGAGCCAGGGAATCATGGGATCCTGCTCTCTCCA
TTCCTCCCTCACCAACTTTTTCCTATCCAATCTGAAAGATGGCCTGAGAAGTGAATGGCT
GGTCAGGAAAGACGTACAGACACACTCCATCTCCCCACAGGAGCATCAGCAAGTTCATCA
GGCATTCTCATTGGGCCAGATGTGTGGCATATCAGAATTGGTGAGGTGAGAAGGCAAGAG
AGGATTACAGAAGCTTCCTCTCTTCAACAGCCAGTTCTTACCCTGGCGCACTCTGCCTAT
AACTAGCAGGCCACATTCAGTCAGTCGGCCAAGCCAGGGAAAACTAGATTGAGGATGCTG
GCCACCTGCAACCCCTTTCCTCCACCTGGTTCAAGATCAGCACTGCTACTTCTCAGTGCC
CAGGAGCGAGGTTACTGAGCTCTAGGAGGGCAGAGATTTCTCAGTTTTCCTTCTCTTTCT
CCCTAACCACCTTTCCCCGCTTCCTCCGAGGTGAGTCATCTCCTGAGAACCTGCTGCTCC
AGCCTTACTGCAGTATCACTAAGCCCCGAAGCCTTGCTCAGTTTATCCCTTTTCTTGTCT
CCCTAACAATACACCTGGCAGCTGGTAACATCTAAAATGTGGGACTCCACATGGGCATGA
CTGAGCATGTTTCTTCAGGCCATAGCTTGGCTGCCAGAGCAGCTTTTTAGCAGCAAGGGC
CTAGACTGTAGGCCAGGAAAGCAGGTGGGGGCAGAGGCAAGAAGCTTTCATGGCTGGCTT
CTCAGAATTTTTTTTCTTGATCAAGACCATGACACTTATAAGACCCTCCTGCTTGAATTT
ATAACCCCCAAACCCCAACTTCTCTTCCCATGTCGTCTTCAAATGGTTCCCCTCTGTAGG
CTCACCCATGGGCCCTCCTCACAAGAGTTTTGCAGGATTTCAGAATCAGAATCAACTTAT
CTAAATTCAACTCTATTTTACAGAGGAGGAAATAGAAATCCAGAGAGGTTAAATTATTTG
ACCAAGGTTACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55641145|ref|XP_529634.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55641145|ref|XP_529634.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               370-488, - strand, RNAz p=0.979338
               

               
               800-915, - strand, RNAz p=0.613621
               

               
               991-1147, - strand, RNAz p=0.989608

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               370-488, - strand, RNAz p=0.979338
               

               
               800-915, - strand, RNAz p=0.613621
               

               
               991-1147, - strand, RNAz p=0.989608

Homologous human UTR: 3 entry(ies)

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Homologous human UTR: 3 entry(ies)

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               5' of CR749580, -
               

               
               5' of CR749580, -
               

               
               5' of CR749580, -

Homologous human UTR: 3 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR749580, -
               

               
               5' of CR749580, -
               

               
               5' of CR749580, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               107-1531, gnl|bosTau2|chr3 (16921494-16920084)
               

               
               107-1531, gnl|Hg17|chr1 (147408846-147410303)
               

               
               107-1531, gnl|Mm7|chr3 (95504972-95503491)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-1531, gnl|bosTau2|chr3 (16921494-16920084)
               

               
               107-1531, gnl|Hg17|chr1 (147408846-147410303)
               

               
               107-1531, gnl|Mm7|chr3 (95504972-95503491)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               che (0.272628)
               

               
               nms (0.213858)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)
               

               
               nms (0.213858)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	370-488, - strand, RNAz p=0.979338
	800-915, - strand, RNAz p=0.613621
	991-1147, - strand, RNAz p=0.989608

	107-1531, gnl\|bosTau2\|chr3 (16921494-16920084)
	107-1531, gnl\|Hg17\|chr1 (147408846-147410303)
	107-1531, gnl\|Mm7\|chr3 (95504972-95503491)

	che (0.272628)
	nms (0.213858)
	sag (0.182715)
	cut (0.169924)
	fhi (0.169578)
	cag (0.151194)
	ski (0.146735)
	cst (0.140036)
	hlv (0.139256)
	pla (0.133672)
	kid (0.129735)
	sug (0.127291)
	ese (0.126502)
	ebs (0.118301)
	ecc (0.115035)
	ldo (0.0970026)