Ss1.1-Pig4-TMW8032L19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCTCCTAAAAAGACAGCACCCCTGAATGCTGAGTCCTCTGTTGAAAAAGAGATTCTGAA AACTCAGAGAAAGGAGAAGATGTCTCATGGCAAAAGGAAGAAATCAAGAAATGAAGCCAA AGACTTGGATACTTCTGACTGTGTACCTATTTGGTGTTTAAAAGAAAAGAAAACCAGTGA CATCGTGGACTTAGATGTTGTTTTGTCTGCATTTGAGAACATCATCCTAGAGTATAAACA AAAAATAGATTCTAGAATTTGTAAGGAAGCTATCAACAAATTTCATTCTAATTTGAAAGA ACAACTCATCAAAATGCTTAAAGAAGTCCAGATGCTGCAAACTCTCAAAAGGAAGAAGGC TAAGATGATTTCAGATATCGAAAAGAAACGGCAGCGTTTGATTGAAGTCCAGGATGAACT GCTTCGGTTAGAACCAGAGCTGCAACAACTACAAATAAAGTATGATGAACTTAAGGAGAG AAAATCTTCCCTTAAGAATGCAGCATATTTCTTGTCCAATTTAAAACAGCTTCATCAAGA TTATTCAGATATTCAAGAGAAAGAACCAAATGCAAAGGAAATGTATGATTCATCTAGCCT TCCAGCTCTGCTATTCAAAGCAAGACCTCTTTTGGGAACTGAAAACCATCTGCAAAATAG CAACTATCAATTGGAAAAGCTCCTTGACCAGAAATGAACCAGTTTACTAAAGTGTACACA TACAAAGATTAGTCTCAAGCTACTGCCTGTTACCTTCTGAAACTGTACTTTTTAATTAAT AACCAAAAAGGGAGATAATGGATTTTTCCAACGTATTTTTCCACAAAGAAAATTGGGAGG AAAAAAACCTAAATTTTCAGTTGAAAATTTTTTTATTGTTATAGCAATATTCTCAGATAC ATTAAAAAATAAACTTGTCTCATTGGTCAAGCTGGCTGTATGGTTTCACCACCAAAATTT AATTTTACTTTGTCACTCTCACAGAGGAACAGATCAGTGATTGCCAAGGGGGAGTAGGGG ACGGATGAACTGGGAATAGCAAATGTAAACAATTATATACAGAAGGGATAAACAGTAAGG TCTTGCTGATCTGTAACAAGCCGTAATGGAAAAGAATATGAAAAAATATATCACTCAGTC ACTTTGCAGTATACCAGAAACATTATAAATCATTTATACTTCAATGAAAAAAATGTTACT AAAAATTAGGACAGTTAGTTTTAGAGGTCCTAATTTTCTGGTTAATATCAAGTAATGAGT TAAAATGTTGATACCTAATCAGCCCAAGACATACACATGTTTTACCCTACATATAAACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCTCCTAAAAAGACAGCACCCCTGAATGCTGAGTCCTCTGTTGAAAAAGAGATTCTGAA AACTCAGAGAAAGGAGAAGATGTCTCATGGCAAAAGGAAGAAATCAAGAAATGAAGCCAA AGACTTGGATACTTCTGACTGTGTACCTATTTGGTGTTTAAAAGAAAAGAAAACCAGTGA CATCGTGGACTTAGATGTTGTTTTGTCTGCATTTGAGAACATCATCCTAGAGTATAAACA AAAAATAGATTCTAGAATTTGTAAGGAAGCTATCAACAAATTTCATTCTAATTTGAAAGA ACAACTCATCAAAATGCTTAAAGAAGTCCAGATGCTGCAAACTCTCAAAAGGAAGAAGGC TAAGATGATTTCAGATATCGAAAAGAAACGGCAGCGTTTGATTGAAGTCCAGGATGAACT GCTTCGGTTAGAACCAGAGCTGCAACAACTACAAATAAAGTATGATGAACTTAAGGAGAG AAAATCTTCCCTTAAGAATGCAGCATATTTCTTGTCCAATTTAAAACAGCTTCATCAAGA TTATTCAGATATTCAAGAGAAAGAACCAAATGCAAAGGAAATGTATGATTCATCTAGCCT TCCAGCTCTGCTATTCAAAGCAAGACCTCTTTTGGGAACTGAAAACCATCTGCAAAATAG CAACTATCAATTGGAAAAGCTCCTTGACCAGAAATGAACCAGTTTACTAAAGTGTACACA TACAAAGATTAGTCTCAAGCTACTGCCTGTTACCTTCTGAAACTGTACTTTTTAATTAAT AACCAAAAAGGGAGATAATGGATTTTTCCAACGTATTTTTCCACAAAGAAAATTGGGAGG AAAAAAACCTAAATTTTCAGTTGAAAATTTTTTTATTGTTATAGCAATATTCTCAGATAC ATTAAAAAATAAACTTGTCTCATTGGTCAAGCTGGCTGTATGGTTTCACCACCAAAATTT AATTTTACTTTGTCACTCTCACAGAGGAACAGATCAGTGATTGCCAAGGGGGAGTAGGGG ACGGATGAACTGGGAATAGCAAATGTAAACAATTATATACAGAAGGGATAAACAGTAAGG TCTTGCTGATCTGTAACAAGCCGTAATGGAAAAGAATATGAAAAAATATATCACTCAGTC ACTTTGCAGTATACCAGAAACATTATAAATCATTTATACTTCAATGAAAAAAATGTTACT AAAAATTAGGACAGTTAGTTTTAGAGGTCCTAATTTTCTGGTTAATATCAAGTAATGAGT TAAAATGTTGATACCTAATCAGCCCAAGACATACACATGTTTTACCCTACATATAAACAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 80 entry(ies) | More info |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
| 128-235, gnl|bosTau2|chr27 (10030145-10030038) | |
| 128-235, gnl|canFam2|chr16 (48807186-48807078) | |
| 128-235, gnl|canFam2|chr16 (48807082-48807189) | |
| 128-235, gnl|canFam2|chr16 (48807203-48807077) | |
| 128-235, gnl|dasNov1|scaffold_166727 (4791-4658) | |
| 128-235, gnl|dasNov1|scaffold_34243 (12274-12165) | |
| 128-235, gnl|dasNov1|scaffold_34243 (12164-12277) | |
| 128-235, gnl|echTel1|scaffold_283106 (4004-3888) | |
| 128-235, gnl|echTel1|scaffold_283106 (3887-4007) | |
| 128-235, gnl|echTel1|scaffold_7534 (2221-2348) | |
| 128-235, gnl|hg17|chr11 (13735142-13735251) | |
| 128-235, gnl|hg17|chr12 (25137320-25137430) | |
| 128-235, gnl|hg17|chr4 (186006358-186006485) | |
| 128-235, gnl|Hg17|chr4 (186006484-186006377) | |
| 128-235, gnl|loxAfr1|scaffold_49579 (11695-11577) | |
| 128-235, gnl|loxAfr1|scaffold_49579 (11576-11698) | |
| 128-235, gnl|loxAfr1|scaffold_49579 (11698-11584) | |
| 128-235, gnl|mm7|chr8 (45347949-45347839) | |
| 128-235, gnl|mm7|chr8 (45347839-45347949) | |
| 128-235, gnl|mm7|chr8 (45347967-45347840) | |
| 128-235, gnl|Mm7|chr8 (45347839-45347946) | |
| 128-235, gnl|oryCun1|scaffold_177355 (6028-6137) | |
| 128-235, gnl|oryCun1|scaffold_177355 (6138-6030) | |
| 128-235, gnl|oryCun1|scaffold_208211 (135045-135167) | |
| 128-235, gnl|panTro1|chr3 (204212082-204212209) | |
| 128-235, gnl|panTro1|chr9 (13948615-13948724) | |
| 128-235, gnl|panTro1|chrUn_random (51537917-51538027) | |
| 128-235, gnl|rheMac2|chr11 (25369865-25369975) | |
| 128-235, gnl|rheMac2|chr11 (25369976-25369862) | |
| 128-235, gnl|rheMac2|chr5 (176807316-176807443) | |
| 128-235, gnl|rn3|chr16 (49005248-49005358) | |
| 128-235, gnl|rn3|chr16 (49005359-49005245) | |
| 128-235, gnl|rn3|chr16 (49005230-49005357) | |
| 423-581, gnl|bosTau2|chr27 (10024759-10024601) | |
| 423-581, gnl|canFam2|chr16 (48816008-48815855) | |
| 423-581, gnl|canFam2|chr16 (48815855-48816008) | |
| 423-581, gnl|dasNov1|scaffold_34243 (12619-12465) | |
| 423-581, gnl|dasNov1|scaffold_34243 (12465-12618) | |
| 423-581, gnl|echTel1|scaffold_206059 (280-422) | |
| 423-581, gnl|echTel1|scaffold_206059 (422-279) | |
| 423-581, gnl|hg17|chr11 (13735434-13735586) | |
| 423-581, gnl|hg17|chr12 (25136974-25137129) | |
| 423-581, gnl|Hg17|chr4 (185994110-185993952) | |
| 423-581, gnl|loxAfr1|scaffold_49579 (12041-11887) | |
| 423-581, gnl|loxAfr1|scaffold_49579 (11887-12040) | |
| 423-581, gnl|mm7|chr8 (45354250-45354098) | |
| 423-581, gnl|mm7|chr8 (45354098-45354250) | |
| 423-581, gnl|Mm7|chr8 (45354091-45354249) | |
| 423-581, gnl|oryCun1|scaffold_177355 (5697-5850) | |
| 423-581, gnl|oryCun1|scaffold_177355 (5850-5698) | |
| 423-581, gnl|panTro1|chr9 (13948912-13949064) | |
| 423-581, gnl|panTro1|chrUn_random (51537571-51537726) | |
| 423-581, gnl|rheMac2|chr11 (25369519-25369674) | |
| 423-581, gnl|rheMac2|chr11 (25369674-25369520) | |
| 423-581, gnl|rn3|chr16 (48999725-48999877) | |
| 423-581, gnl|rn3|chr16 (48999877-48999725) | |
| 583-743, gnl|bosTau2|chr27 (10023174-10023014) | |
| 583-743, gnl|canFam2|chr16 (48817711-48817846) | |
| 583-743, gnl|canFam2|chr16 (48817909-48817676) | |
| 583-743, gnl|dasNov1|scaffold_106712 (2545-2779) | |
| 583-743, gnl|dasNov1|scaffold_34243 (12619-12754) | |
| 583-743, gnl|echTel1|scaffold_214542 (3668-3534) | |
| 583-743, gnl|echTel1|scaffold_214542 (3475-3706) | |
| 583-743, gnl|galGal2|chr4 (40092760-40092525) | |
| 583-743, gnl|hg17|chr11 (13735587-13735718) | |
| 583-743, gnl|hg17|chr4 (185991512-185991737) | |
| 583-743, gnl|Hg17|chr4 (185991705-185991541) | |
| 583-743, gnl|loxAfr1|scaffold_230891 (651-410) | |
| 583-743, gnl|loxAfr1|scaffold_49579 (12041-12179) | |
| 583-743, gnl|mm7|chr8 (45356124-45356257) | |
| 583-743, gnl|mm7|chr8 (45356292-45356087) | |
| 583-743, gnl|monDom2|scaffold_9 (66801670-66801878) | |
| 583-743, gnl|oryCun1|scaffold_208211 (123139-123024) | |
| 583-743, gnl|oryCun1|scaffold_208211 (122996-123182) | |
| 583-743, gnl|panTro1|chr3 (204197239-204197464) | |
| 583-743, gnl|panTro1|chr9 (13949065-13949196) | |
| 583-743, gnl|rheMac2|chr11 (25369519-25369384) | |
| 583-743, gnl|rheMac2|chr5 (176791962-176792191) | |
| 583-743, gnl|rn3|chr16 (48997804-48997670) | |
| 583-743, gnl|rn3|chr16 (48997635-48997837) |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 128-235, gnl|bosTau2|chr27 (10030145-10030038) | |
| 128-235, gnl|canFam2|chr16 (48807186-48807078) | |
| 128-235, gnl|canFam2|chr16 (48807082-48807189) | |
| 128-235, gnl|canFam2|chr16 (48807203-48807077) | |
| 128-235, gnl|dasNov1|scaffold_166727 (4791-4658) | |
| 128-235, gnl|dasNov1|scaffold_34243 (12274-12165) | |
| 128-235, gnl|dasNov1|scaffold_34243 (12164-12277) | |
| 128-235, gnl|echTel1|scaffold_283106 (4004-3888) | |
| 128-235, gnl|echTel1|scaffold_283106 (3887-4007) | |
| 128-235, gnl|echTel1|scaffold_7534 (2221-2348) | |
| 128-235, gnl|hg17|chr11 (13735142-13735251) | |
| 128-235, gnl|hg17|chr12 (25137320-25137430) | |
| 128-235, gnl|hg17|chr4 (186006358-186006485) | |
| 128-235, gnl|Hg17|chr4 (186006484-186006377) | |
| 128-235, gnl|loxAfr1|scaffold_49579 (11695-11577) | |
| 128-235, gnl|loxAfr1|scaffold_49579 (11576-11698) | |
| 128-235, gnl|loxAfr1|scaffold_49579 (11698-11584) | |
| 128-235, gnl|mm7|chr8 (45347949-45347839) | |
| 128-235, gnl|mm7|chr8 (45347839-45347949) | |
| 128-235, gnl|mm7|chr8 (45347967-45347840) | |
| 128-235, gnl|Mm7|chr8 (45347839-45347946) | |
| 128-235, gnl|oryCun1|scaffold_177355 (6028-6137) | |
| 128-235, gnl|oryCun1|scaffold_177355 (6138-6030) | |
| 128-235, gnl|oryCun1|scaffold_208211 (135045-135167) | |
| 128-235, gnl|panTro1|chr3 (204212082-204212209) | |
| 128-235, gnl|panTro1|chr9 (13948615-13948724) | |
| 128-235, gnl|panTro1|chrUn_random (51537917-51538027) | |
| 128-235, gnl|rheMac2|chr11 (25369865-25369975) | |
| 128-235, gnl|rheMac2|chr11 (25369976-25369862) | |
| 128-235, gnl|rheMac2|chr5 (176807316-176807443) | |
| 128-235, gnl|rn3|chr16 (49005248-49005358) | |
| 128-235, gnl|rn3|chr16 (49005359-49005245) | |
| 128-235, gnl|rn3|chr16 (49005230-49005357) | |
| 423-581, gnl|bosTau2|chr27 (10024759-10024601) | |
| 423-581, gnl|canFam2|chr16 (48816008-48815855) | |
| 423-581, gnl|canFam2|chr16 (48815855-48816008) | |
| 423-581, gnl|dasNov1|scaffold_34243 (12619-12465) | |
| 423-581, gnl|dasNov1|scaffold_34243 (12465-12618) | |
| 423-581, gnl|echTel1|scaffold_206059 (280-422) | |
| 423-581, gnl|echTel1|scaffold_206059 (422-279) | |
| 423-581, gnl|hg17|chr11 (13735434-13735586) | |
| 423-581, gnl|hg17|chr12 (25136974-25137129) | |
| 423-581, gnl|Hg17|chr4 (185994110-185993952) | |
| 423-581, gnl|loxAfr1|scaffold_49579 (12041-11887) | |
| 423-581, gnl|loxAfr1|scaffold_49579 (11887-12040) | |
| 423-581, gnl|mm7|chr8 (45354250-45354098) | |
| 423-581, gnl|mm7|chr8 (45354098-45354250) | |
| 423-581, gnl|Mm7|chr8 (45354091-45354249) | |
| 423-581, gnl|oryCun1|scaffold_177355 (5697-5850) | |
| 423-581, gnl|oryCun1|scaffold_177355 (5850-5698) | |
| 423-581, gnl|panTro1|chr9 (13948912-13949064) | |
| 423-581, gnl|panTro1|chrUn_random (51537571-51537726) | |
| 423-581, gnl|rheMac2|chr11 (25369519-25369674) | |
| 423-581, gnl|rheMac2|chr11 (25369674-25369520) | |
| 423-581, gnl|rn3|chr16 (48999725-48999877) | |
| 423-581, gnl|rn3|chr16 (48999877-48999725) | |
| 583-743, gnl|bosTau2|chr27 (10023174-10023014) | |
| 583-743, gnl|canFam2|chr16 (48817711-48817846) | |
| 583-743, gnl|canFam2|chr16 (48817909-48817676) | |
| 583-743, gnl|dasNov1|scaffold_106712 (2545-2779) | |
| 583-743, gnl|dasNov1|scaffold_34243 (12619-12754) | |
| 583-743, gnl|echTel1|scaffold_214542 (3668-3534) | |
| 583-743, gnl|echTel1|scaffold_214542 (3475-3706) | |
| 583-743, gnl|galGal2|chr4 (40092760-40092525) | |
| 583-743, gnl|hg17|chr11 (13735587-13735718) | |
| 583-743, gnl|hg17|chr4 (185991512-185991737) | |
| 583-743, gnl|Hg17|chr4 (185991705-185991541) | |
| 583-743, gnl|loxAfr1|scaffold_230891 (651-410) | |
| 583-743, gnl|loxAfr1|scaffold_49579 (12041-12179) | |
| 583-743, gnl|mm7|chr8 (45356124-45356257) | |
| 583-743, gnl|mm7|chr8 (45356292-45356087) | |
| 583-743, gnl|monDom2|scaffold_9 (66801670-66801878) | |
| 583-743, gnl|oryCun1|scaffold_208211 (123139-123024) | |
| 583-743, gnl|oryCun1|scaffold_208211 (122996-123182) | |
| 583-743, gnl|panTro1|chr3 (204197239-204197464) | |
| 583-743, gnl|panTro1|chr9 (13949065-13949196) | |
| 583-743, gnl|rheMac2|chr11 (25369519-25369384) | |
| 583-743, gnl|rheMac2|chr5 (176791962-176792191) | |
| 583-743, gnl|rn3|chr16 (48997804-48997670) | |
| 583-743, gnl|rn3|chr16 (48997635-48997837) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| amn (0.417711) | |
| spl (0.286369) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| aor (0.195274) | |
| ret (0.128733) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| spl (0.286369) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| aor (0.195274) | |
| ret (0.128733) | |
| cty (0.10408) | |
| nbm (0.0993246) |