Non-Coding RNA Search

Ss1.1-Pig4-TMW8032L21.3

Sequence:


               
               CTTCACCTACAAGATCACACCCTGAAGTGGAAAATTCTGCCTGGTGTCCTGCTGTGGGTT
TTGCTCCTGATGGGCTGTAGCGTGAGCCTAGCCACCTCCGGAAGGTGCGTCCATCTGAGG
CATAAGGTATTACCTCACTGGGTCTGGGAGAAGGTTCCTGATCCTGCCAACAGCAGTTTC
AGCCTGCCCCCCATGAAGGAGCTGCCCCAAGCCCAGCCTCCTGGGGACTCGCCCATCCTG
GAAGTGGAGGAGATAGAGAAGGTACCGGTTACAGAGCCCCCCCAGGCCTCGGTCCCACTG
GATTCTGGGTATGAGAAACACTTCCTGCCCACGCCTGAAGAGTTGGGCCTTCTGGGCCCC
ACCCCAGGCTCCAGGTTATGGCCTGAAACCACGCCAGGTGGGGAGAGGGGTACTCACTTG
ACAGATGAAGACACTGAAGCTCAGAGAGGCTGAGACATTTGCCTGAGGACACTCAGCCAA
GAAGAGCTGACATTGAAGCACCCCTACAGAGAAGGGGCTAGGAGGGCTTGGCCCTAGAGA
GAATATGTGGATGGATAAGGGAGCAAAGGAAAATATACGAAATCCAGAGGAGGAGCTGCC
TCCCCAAACCTGTCCTGCTGCTATAACAGAACTGTAGTTCTGTGCACTCCCAGCCTTCCT
CGCAGCTGGGTCCAACCATGGACCGAGTTCTCACATGTGGAACACAAGCAGAGATGATGT
GTGCCAAGGCTGGGTCTAGGTGGGGGCCTCTCCACATTCCCGTCCTTTTCCCATGAGCTG
GAGCATGACTGTGCCTTGTGATCCAGTTTTGGCCACACCCAAGGTGAAGGTGGAACAAGA
AATGGAAAGGAACCAGAGTTCCCAAATGATTACATGAACAAGAAGTGCCTAAAGAAATAA
ATGTTTTAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCACCTACAAGATCACACCCTGAAGTGGAAAATTCTGCCTGGTGTCCTGCTGTGGGTT
TTGCTCCTGATGGGCTGTAGCGTGAGCCTAGCCACCTCCGGAAGGTGCGTCCATCTGAGG
CATAAGGTATTACCTCACTGGGTCTGGGAGAAGGTTCCTGATCCTGCCAACAGCAGTTTC
AGCCTGCCCCCCATGAAGGAGCTGCCCCAAGCCCAGCCTCCTGGGGACTCGCCCATCCTG
GAAGTGGAGGAGATAGAGAAGGTACCGGTTACAGAGCCCCCCCAGGCCTCGGTCCCACTG
GATTCTGGGTATGAGAAACACTTCCTGCCCACGCCTGAAGAGTTGGGCCTTCTGGGCCCC
ACCCCAGGCTCCAGGTTATGGCCTGAAACCACGCCAGGTGGGGAGAGGGGTACTCACTTG
ACAGATGAAGACACTGAAGCTCAGAGAGGCTGAGACATTTGCCTGAGGACACTCAGCCAA
GAAGAGCTGACATTGAAGCACCCCTACAGAGAAGGGGCTAGGAGGGCTTGGCCCTAGAGA
GAATATGTGGATGGATAAGGGAGCAAAGGAAAATATACGAAATCCAGAGGAGGAGCTGCC
TCCCCAAACCTGTCCTGCTGCTATAACAGAACTGTAGTTCTGTGCACTCCCAGCCTTCCT
CGCAGCTGGGTCCAACCATGGACCGAGTTCTCACATGTGGAACACAAGCAGAGATGATGT
GTGCCAAGGCTGGGTCTAGGTGGGGGCCTCTCCACATTCCCGTCCTTTTCCCATGAGCTG
GAGCATGACTGTGCCTTGTGATCCAGTTTTGGCCACACCCAAGGTGAAGGTGGAACAAGA
AATGGAAAGGAACCAGAGTTCCCAAATGATTACATGAACAAGAAGTGCCTAAAGAAATAA
ATGTTTTAATAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               276-386, + strand, RNAz p=0.947796
               

               
               418-573, - strand, RNAz p=0.989379

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               276-386, + strand, RNAz p=0.947796
               

               
               418-573, - strand, RNAz p=0.989379

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               197-907, gnl|bosTau2|chr7 (7757850-7757156)
               

               
               197-907, gnl|Hg17|chr19 (14023906-14025016)
               


               
               287-875, gnl|bosTau2|chr5 (57126560-57125985)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               197-907, gnl|bosTau2|chr7 (7757850-7757156)
               

               
               197-907, gnl|Hg17|chr19 (14023906-14025016)
               


               
               287-875, gnl|bosTau2|chr5 (57126560-57125985)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               cly (0.241284)
               

               
               mga (0.160205)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.241284)
               

               
               mga (0.160205)
               

               
               med (0.116252)

	276-386, + strand, RNAz p=0.947796
	418-573, - strand, RNAz p=0.989379

	197-907, gnl\|bosTau2\|chr7 (7757850-7757156)
	197-907, gnl\|Hg17\|chr19 (14023906-14025016)

	287-875, gnl\|bosTau2\|chr5 (57126560-57125985)