Non-Coding RNA Search

Ss1.1-Pig4-TMW8032M03.3

Sequence:


               
               AGGAAAGCTTTTAAAATATTTTTGCTTTTAGCCATGCATCTGCTGATGAGCAATGTGTCC
ATTTTTAATACAGCCAGTTAAATCCAAAATGGGGCTTACTGGAGTCAAGGGAATACATTA
GTCCACAAAATACATGTTTTCTGGTGCTCATCTCACATGCTATCCTGTAAGACAGTTTTA
TACAAAATGGTATGACAAGTTCATTGCTCAAATATATAGAAGTTCAAGAATTTTCGATTA
ACTGCAGGTAATAATTAACCGCATGCTATGGACTCAACGAAGCTAGTTCACTTAAGCCAA
TGCTATTTTATGGATCTGTAGCTCTTCAGTGAACTGAATGGCAGTCTGCCTTTGTGTTGA
TAATTGTACATTGTGATGTTGTCATTTCTTAGCTTAAGTGTCCTCTTTACCAGAGAGATT
GAGCAGACTGATGCCTGCATAAGATGAATAAACAGGGTTAGTTCCATGTGAATCTGTTAA
TTAAAAAGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAAGCTTTTAAAATATTTTTGCTTTTAGCCATGCATCTGCTGATGAGCAATGTGTCC
ATTTTTAATACAGCCAGTTAAATCCAAAATGGGGCTTACTGGAGTCAAGGGAATACATTA
GTCCACAAAATACATGTTTTCTGGTGCTCATCTCACATGCTATCCTGTAAGACAGTTTTA
TACAAAATGGTATGACAAGTTCATTGCTCAAATATATAGAAGTTCAAGAATTTTCGATTA
ACTGCAGGTAATAATTAACCGCATGCTATGGACTCAACGAAGCTAGTTCACTTAAGCCAA
TGCTATTTTATGGATCTGTAGCTCTTCAGTGAACTGAATGGCAGTCTGCCTTTGTGTTGA
TAATTGTACATTGTGATGTTGTCATTTCTTAGCTTAAGTGTCCTCTTTACCAGAGAGATT
GAGCAGACTGATGCCTGCATAAGATGAATAAACAGGGTTAGTTCCATGTGAATCTGTTAA
TTAAAAAGGAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-487, gnl|bosTau2|chr6 (6147986-6148476)
               

               
               1-487, gnl|Hg17|chr4 (106556283-106556778)
               

               
               1-487, gnl|Mm7|chr3 (133262727-133262274)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-487, gnl|bosTau2|chr6 (6147986-6148476)
               

               
               1-487, gnl|Hg17|chr4 (106556283-106556778)
               

               
               1-487, gnl|Mm7|chr3 (133262727-133262274)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nms (0.213858)
               

               
               nep (0.183925)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               nep (0.183925)

	1-487, gnl\|bosTau2\|chr6 (6147986-6148476)
	1-487, gnl\|Hg17\|chr4 (106556283-106556778)
	1-487, gnl\|Mm7\|chr3 (133262727-133262274)