Ss1.1-Pig4-TMW8032M06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTAGGGTTCCTCTCAGTTTGAAGTATTCCTGCCCTTCTGAAAGTACATGGAAACTAGCA GTATCTTCTCTCCTCAAAGTTCTTTCTATTGGGCTACCTGTTGCCCGGCAGCATGCTTCT TCCGGAAAATTTGACAGTATGTGGCCAGAACTAGCCAACACTTTTGAAGACTTTCTCTTT ACTAAAAGCATACCTCCAGATAACCTCTCTATTCAAGAATTTCAAAGAAATGAAAGTATT GATGTTGAGGTAGTTCAGCTTATCAGCACTGAGATACTACCTTACGCCAATTTTATTCCT AAGGAATTCGTTGGTCAGATAATGACTATGCTTAATAAGGGCTCAATACATTCTCAGTCA TCTTCATTTACAGAAGCAGAGATTGATATTCGTTTGAGAGAAGAATTTTCTAAAATGTGT TTTGAAACATTGCTCCAGTTTTCCTTCAGTAATAAAGTCACAACACCTCAAGAAGGCTAC ATCTCACGAATGGCACTCTCAGTGCTTCTAAAGAGGTCTCAAGATGTACTGCATCGTTAT ATAGAGGATGAAAGACTAAGTGGTAAATGCCCTCTTCCAAGGCAACAAGTAACAGAAATC ATATTTGTTTTAAAAGCAGTCAGTACTCTCATTGATTCACTTAAGAAAACTCAGCCTGAG AATGTTGATGGAAATACCTGGGCACAAGTAATTGCCTTATACCCAACTTTAGTAGAATGT ATCACCTGCTCATCCTCAGAAGTCTGCTCTGCACTTAAAGAGGCACTAGTTCCTTTTAAG GATTTCATGCAACCACCAGCATCCAAAGTTCAAAATGGAGAATCTTGACCAGCTACAATA CATTTAAAGAAGGAAGATAACTGAAGAATGTAACTCATCAGTGAGTTTTCTATGAGAAGG ACATTTCTTACAACAAATAATTCTTGGCAGCTGTTGTTGGCCTCCTTTAAATTTTACTTA CCTGAGTTAAGTAATTCATACTACAGTCTTACATGTCAACAAAGGCTCCTGAATGAGTAG CAGTATAAGCCTTTAATAAATTAAACTGATGAGAGAGATGGTTAATACCACAGCATACCT GCTACCATATCTTCAGTTGGTGATTTAAAAGTGAGCTTATGTACAGTTTGTGGTAAATGT GTTAATGATGTACTTTTTAAAAAGAAAGAAAAGATATTTCCTTTAGTCAGATTTATTAGG CTGGTCTTTTTGCGCCCTTTTTCTAGTACAAAATTGTACTAAAATTTTATGCAAGATGGT ACTGTAACATTCCATATTGTCTATAACCAGCCTTTGTAAACAAAGGGAACTGATATACTT GTGTGTATAATAAATGGTACAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTAGGGTTCCTCTCAGTTTGAAGTATTCCTGCCCTTCTGAAAGTACATGGAAACTAGCA GTATCTTCTCTCCTCAAAGTTCTTTCTATTGGGCTACCTGTTGCCCGGCAGCATGCTTCT TCCGGAAAATTTGACAGTATGTGGCCAGAACTAGCCAACACTTTTGAAGACTTTCTCTTT ACTAAAAGCATACCTCCAGATAACCTCTCTATTCAAGAATTTCAAAGAAATGAAAGTATT GATGTTGAGGTAGTTCAGCTTATCAGCACTGAGATACTACCTTACGCCAATTTTATTCCT AAGGAATTCGTTGGTCAGATAATGACTATGCTTAATAAGGGCTCAATACATTCTCAGTCA TCTTCATTTACAGAAGCAGAGATTGATATTCGTTTGAGAGAAGAATTTTCTAAAATGTGT TTTGAAACATTGCTCCAGTTTTCCTTCAGTAATAAAGTCACAACACCTCAAGAAGGCTAC ATCTCACGAATGGCACTCTCAGTGCTTCTAAAGAGGTCTCAAGATGTACTGCATCGTTAT ATAGAGGATGAAAGACTAAGTGGTAAATGCCCTCTTCCAAGGCAACAAGTAACAGAAATC ATATTTGTTTTAAAAGCAGTCAGTACTCTCATTGATTCACTTAAGAAAACTCAGCCTGAG AATGTTGATGGAAATACCTGGGCACAAGTAATTGCCTTATACCCAACTTTAGTAGAATGT ATCACCTGCTCATCCTCAGAAGTCTGCTCTGCACTTAAAGAGGCACTAGTTCCTTTTAAG GATTTCATGCAACCACCAGCATCCAAAGTTCAAAATGGAGAATCTTGACCAGCTACAATA CATTTAAAGAAGGAAGATAACTGAAGAATGTAACTCATCAGTGAGTTTTCTATGAGAAGG ACATTTCTTACAACAAATAATTCTTGGCAGCTGTTGTTGGCCTCCTTTAAATTTTACTTA CCTGAGTTAAGTAATTCATACTACAGTCTTACATGTCAACAAAGGCTCCTGAATGAGTAG CAGTATAAGCCTTTAATAAATTAAACTGATGAGAGAGATGGTTAATACCACAGCATACCT GCTACCATATCTTCAGTTGGTGATTTAAAAGTGAGCTTATGTACAGTTTGTGGTAAATGT GTTAATGATGTACTTTTTAAAAAGAAAGAAAAGATATTTCCTTTAGTCAGATTTATTAGG CTGGTCTTTTTGCGCCCTTTTTCTAGTACAAAATTGTACTAAAATTTTATGCAAGATGGT ACTGTAACATTCCATATTGTCTATAACCAGCCTTTGTAAACAAAGGGAACTGATATACTT GTGTGTATAATAAATGGTACAGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-188, - strand, RNAz p=0.768994 | |
| 664-782, - strand, RNAz p=0.904766 | |
| 1133-1344, + strand, RNAz p=0.833222 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-188, - strand, RNAz p=0.768994 | |
| 664-782, - strand, RNAz p=0.904766 | |
| 1133-1344, + strand, RNAz p=0.833222 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK092646, + |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-188, gnl|bosTau2|chr5 (32294465-32294652) | |
| 1-188, gnl|canFam2|chr10 (8738919-8739151) | |
| 1-188, gnl|danRer3|chrNA (27317851-27317647) | |
| 1-188, gnl|echTel1|scaffold_28138 (983-1225) | |
| 1-188, gnl|fr1|chrUn (93516463-93516260) | |
| 1-188, gnl|galGal2|chr1 (29968449-29968688) | |
| 1-188, gnl|hg17|chr12 (61251429-61251657) | |
| 1-188, gnl|Hg17|chr12 (61251442-61251629) | |
| 1-188, gnl|mm7|chr10 (122501567-122501347) | |
| 1-188, gnl|Mm7|chr10 (122501560-122501373) | |
| 1-188, gnl|monDom2|scaffold_71 (4345394-4345612) | |
| 1-188, gnl|oryCun1|scaffold_87869 (5564-5791) | |
| 1-188, gnl|panTro1|chr10 (62546174-62546402) | |
| 1-188, gnl|rheMac2|chr11 (59759495-59759723) | |
| 1-188, gnl|rn3|chr7 (62798813-62798593) | |
| 1-188, gnl|tetNig1|chr13 (8605945-8605723) | |
| 1-188, gnl|xenTro1|scaffold_4 (908547-908319) | |
| 363-582, gnl|bosTau2|chr5 (32304025-32304245) | |
| 363-582, gnl|canFam2|chr10 (8749683-8749946) | |
| 363-582, gnl|danRer3|chrNA (27315605-27315336) | |
| 363-582, gnl|dasNov1|scaffold_1159 (39962-40224) | |
| 363-582, gnl|echTel1|scaffold_308631 (54747-54479) | |
| 363-582, gnl|fr1|chrUn (93515800-93515560) | |
| 363-582, gnl|galGal2|chr1 (29977133-29977384) | |
| 363-582, gnl|hg17|chr12 (61265302-61265564) | |
| 363-582, gnl|Hg17|chr12 (61265329-61265549) | |
| 363-582, gnl|loxAfr1|scaffold_1162 (695-435) | |
| 363-582, gnl|mm7|chr10 (122496181-122495922) | |
| 363-582, gnl|Mm7|chr10 (122496152-122495932) | |
| 363-582, gnl|monDom2|scaffold_71 (4367270-4367536) | |
| 363-582, gnl|oryCun1|scaffold_215432 (518-777) | |
| 363-582, gnl|rheMac2|chr11 (59773795-59774057) | |
| 363-582, gnl|rn3|chr7 (62793175-62792925) | |
| 363-582, gnl|tetNig1|chr13 (8605276-8605028) | |
| 363-582, gnl|xenTro1|scaffold_4 (901337-901109) | |
| 664-1344, gnl|bosTau2|chr5 (32318003-32318680) | |
| 664-1344, gnl|Hg17|chr12 (61272632-61273315) | |
| 664-1344, gnl|Mm7|chr10 (122489071-122488404) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-188, gnl|bosTau2|chr5 (32294465-32294652) | |
| 1-188, gnl|canFam2|chr10 (8738919-8739151) | |
| 1-188, gnl|danRer3|chrNA (27317851-27317647) | |
| 1-188, gnl|echTel1|scaffold_28138 (983-1225) | |
| 1-188, gnl|fr1|chrUn (93516463-93516260) | |
| 1-188, gnl|galGal2|chr1 (29968449-29968688) | |
| 1-188, gnl|hg17|chr12 (61251429-61251657) | |
| 1-188, gnl|Hg17|chr12 (61251442-61251629) | |
| 1-188, gnl|mm7|chr10 (122501567-122501347) | |
| 1-188, gnl|Mm7|chr10 (122501560-122501373) | |
| 1-188, gnl|monDom2|scaffold_71 (4345394-4345612) | |
| 1-188, gnl|oryCun1|scaffold_87869 (5564-5791) | |
| 1-188, gnl|panTro1|chr10 (62546174-62546402) | |
| 1-188, gnl|rheMac2|chr11 (59759495-59759723) | |
| 1-188, gnl|rn3|chr7 (62798813-62798593) | |
| 1-188, gnl|tetNig1|chr13 (8605945-8605723) | |
| 1-188, gnl|xenTro1|scaffold_4 (908547-908319) | |
| 363-582, gnl|bosTau2|chr5 (32304025-32304245) | |
| 363-582, gnl|canFam2|chr10 (8749683-8749946) | |
| 363-582, gnl|danRer3|chrNA (27315605-27315336) | |
| 363-582, gnl|dasNov1|scaffold_1159 (39962-40224) | |
| 363-582, gnl|echTel1|scaffold_308631 (54747-54479) | |
| 363-582, gnl|fr1|chrUn (93515800-93515560) | |
| 363-582, gnl|galGal2|chr1 (29977133-29977384) | |
| 363-582, gnl|hg17|chr12 (61265302-61265564) | |
| 363-582, gnl|Hg17|chr12 (61265329-61265549) | |
| 363-582, gnl|loxAfr1|scaffold_1162 (695-435) | |
| 363-582, gnl|mm7|chr10 (122496181-122495922) | |
| 363-582, gnl|Mm7|chr10 (122496152-122495932) | |
| 363-582, gnl|monDom2|scaffold_71 (4367270-4367536) | |
| 363-582, gnl|oryCun1|scaffold_215432 (518-777) | |
| 363-582, gnl|rheMac2|chr11 (59773795-59774057) | |
| 363-582, gnl|rn3|chr7 (62793175-62792925) | |
| 363-582, gnl|tetNig1|chr13 (8605276-8605028) | |
| 363-582, gnl|xenTro1|scaffold_4 (901337-901109) | |
| 664-1344, gnl|bosTau2|chr5 (32318003-32318680) | |
| 664-1344, gnl|Hg17|chr12 (61272632-61273315) | |
| 664-1344, gnl|Mm7|chr10 (122489071-122488404) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| pro (0.512033) | |
| ret (0.257467) | |
| tes (0.207814) | |
| rec (0.17307) | |
| mga (0.160205) | |
| lun (0.150489) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eru (0.120048) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| ret (0.257467) | |
| tes (0.207814) | |
| rec (0.17307) | |
| mga (0.160205) | |
| lun (0.150489) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eru (0.120048) | |
| jca (0.11396) | |
| eje (0.0988338) |