Non-Coding RNA Search

Ss1.1-Pig4-TMW8032M12.5

Sequence:


               
               AACTCCTAGTTAGTTCCTGCCAAATATATTGCATGGGCTGAAGTTCAGAAGCCACACTCT
TCTTAAATTCCCCGATCCTAGAATCAGGTTCCTCTAATACCTTTTAAATGTCCCAGAGAC
ATGGTGATCCCTAAACGTGAGGGTTTAATCCTAATCCATCCAGGCTTTTCTCTTTGTATA
GATTAAACTAAAAAGCCTATGTGAACCTATTTATCTGCTGGTGAATTTCCACCATGAGCT
CAGACAAGTAATGTGACCATTTAATCACTGCTCCCCAAACATTTACACACAGCACTGCAT
GATAAGTGCTACAGAGAGCTGCCAAAAATAAAAGTTTTAAATACCACCCATCTAACTTTT
ATCTTCGTTTCCTCAGACCATCAGTATTAAATAGATGAAAAAAAACAAACAAACAAACAA
AAAACAAGGACTACTTGAAGCTATTTTTTGTTAATATTCTGGTTACTGAAGTTTACTGTA
AATATATATGTAAAGTATGCATATTTCTTTCTAACCGTATGCTTTCTTCCTCCCCATGGA
ATTTCTTCCCACAGATTAGGGCCATTGGACATGGTGGTGAGAGCCACTCATCGCTGGGTG
GAGGGAAAAGTCAGGCCATCTTTCTCAGCACTGGGTGTCTCCATGTACCTGAGTGATAAA
AGCATTTTAAGCTTCTTAGCATTTGTGGGATTAGAAATCTGTTTTTGCTATTTATAATAT
ATGGAAAATGAAACATGATACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCCTAGTTAGTTCCTGCCAAATATATTGCATGGGCTGAAGTTCAGAAGCCACACTCT
TCTTAAATTCCCCGATCCTAGAATCAGGTTCCTCTAATACCTTTTAAATGTCCCAGAGAC
ATGGTGATCCCTAAACGTGAGGGTTTAATCCTAATCCATCCAGGCTTTTCTCTTTGTATA
GATTAAACTAAAAAGCCTATGTGAACCTATTTATCTGCTGGTGAATTTCCACCATGAGCT
CAGACAAGTAATGTGACCATTTAATCACTGCTCCCCAAACATTTACACACAGCACTGCAT
GATAAGTGCTACAGAGAGCTGCCAAAAATAAAAGTTTTAAATACCACCCATCTAACTTTT
ATCTTCGTTTCCTCAGACCATCAGTATTAAATAGATGAAAAAAAACAAACAAACAAACAA
AAAACAAGGACTACTTGAAGCTATTTTTTGTTAATATTCTGGTTACTGAAGTTTACTGTA
AATATATATGTAAAGTATGCATATTTCTTTCTAACCGTATGCTTTCTTCCTCCCCATGGA
ATTTCTTCCCACAGATTAGGGCCATTGGACATGGTGGTGAGAGCCACTCATCGCTGGGTG
GAGGGAAAAGTCAGGCCATCTTTCTCAGCACTGGGTGTCTCCATGTACCTGAGTGATAAA
AGCATTTTAAGCTTCTTAGCATTTGTGGGATTAGAAATCTGTTTTTGCTATTTATAATAT
ATGGAAAATGAAACATGATACCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               149-294, - strand, RNAz p=0.999923

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               149-294, - strand, RNAz p=0.999923

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               158-294, 4057376 BARC 8BOV Bos taurus cDNA clone 8BOV_19H10 5', mRNA 
(gb|CK833518.1|), blast E-value=3e-27, identity=86.86% 
               

               
               158-294, 970077 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb|CK847440.1|), 
blast E-value=3e-27, identity=86.86% 
               

               
               158-294, LB02912.CR_A24 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV918129.1|), 
blast E-value=3e-27, identity=86.86% 
               

               
               158-294, 001004BEMN037205HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY134870.1|), blast E-value=3e-27, identity=86.86% 
               

               
               158-294, 000310BSPB007181HT BSPB Bos taurus cDNA, mRNA sequence 
(gb|DY148719.1|), blast E-value=3e-27, identity=86.86% 
               

               
               158-294, 000310BSPB008567HT BSPB Bos taurus cDNA, mRNA sequence 
(gb|DY216606.1|), blast E-value=3e-27, identity=86.86%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               158-294, 4057376 BARC 8BOV Bos taurus cDNA clone 8BOV_19H10 5', mRNA 
(gb|CK833518.1|), blast E-value=3e-27, identity=86.86% 
               

               
               158-294, 970077 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb|CK847440.1|), 
blast E-value=3e-27, identity=86.86% 
               

               
               158-294, LB02912.CR_A24 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV918129.1|), 
blast E-value=3e-27, identity=86.86% 
               

               
               158-294, 001004BEMN037205HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY134870.1|), blast E-value=3e-27, identity=86.86% 
               

               
               158-294, 000310BSPB007181HT BSPB Bos taurus cDNA, mRNA sequence 
(gb|DY148719.1|), blast E-value=3e-27, identity=86.86% 
               

               
               158-294, 000310BSPB008567HT BSPB Bos taurus cDNA, mRNA sequence 
(gb|DY216606.1|), blast E-value=3e-27, identity=86.86%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-743, gnl|bosTau2|chr10 (11695917-11695180)
               

               
               1-743, gnl|Hg17|chr15 (69905263-69904501)
               

               
               1-743, gnl|Mm7|chr9 (59952564-59953273)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-743, gnl|bosTau2|chr10 (11695917-11695180)
               

               
               1-743, gnl|Hg17|chr15 (69905263-69904501)
               

               
               1-743, gnl|Mm7|chr9 (59952564-59953273)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cbl (0.114797)

	158-294, 4057376 BARC 8BOV Bos taurus cDNA clone 8BOV_19H10 5', mRNA (gb\|CK833518.1\|), blast E-value=3e-27, identity=86.86%
	158-294, 970077 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK847440.1\|), blast E-value=3e-27, identity=86.86%
	158-294, LB02912.CR_A24 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|DV918129.1\|), blast E-value=3e-27, identity=86.86%
	158-294, 001004BEMN037205HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY134870.1\|), blast E-value=3e-27, identity=86.86%
	158-294, 000310BSPB007181HT BSPB Bos taurus cDNA, mRNA sequence (gb\|DY148719.1\|), blast E-value=3e-27, identity=86.86%
	158-294, 000310BSPB008567HT BSPB Bos taurus cDNA, mRNA sequence (gb\|DY216606.1\|), blast E-value=3e-27, identity=86.86%

	1-743, gnl\|bosTau2\|chr10 (11695917-11695180)
	1-743, gnl\|Hg17\|chr15 (69905263-69904501)
	1-743, gnl\|Mm7\|chr9 (59952564-59953273)