Non-Coding RNA Search

Ss1.1-Pig4-TMW8032M22.3

Sequence:


               
               ATCAAAAACTGCCTGTCGGCAGCAGAGGACAAGAAGCTGAAGTCAGTGGCGTTCCCACCC
TTCCCCAGCGGCAGAAACTGCTTCCCCAAACAGACGGCAGCCCAGGTGACCCTCAAAGCC
ATCTCGGCCCACTTCGATGACTCGAGCGCGTCCTCGCTGAAGAACGTCTACTTCCTGCTC
TTCGACAGCGAGAGCATCGGCATCTACGTGCAGGAGATGGCCAAGCTCGATGCCAAGTAG
CCGCCGCGCTCGCCGCCGGGAACCAGGAGGATCGAAGTCACAGGAGCGGGGTTTTATTTT
TCAAAAGGAGAGAGGAAGGGTGACGGCAGGGGAGCGGGTAGCAGAGGCTGCAGGAGCAGG
TCCTGCCCACGGGAAGAGCCCGCTGCGTTTTTATATTCTCGTTAAAAAGAGCCTCAGTCC
GTAATTAACCAGGTCTCCACGAGGGGTTTCTTTCCATCTGTTTTCTTCCTGTTGTTTTAG
AACTTTTTTAAAAAAAAACAGACTTCGTTTTAGATTTATAGCATTGACTTTTACACACAC
ACACACAATCCTCTCAAAATTCTTAAAATCTTCTGTTTCTCCTTTTTGCAAGGGAAGAGG
GCATAAAAGTGAGTTGGGATTTGGTGGCTGTCTGTACTCAGTGATGCAAAGAAGAAAATT
GGAAAGGCATCTCACGGGTGCTTTTCTTTGCTGTTTTAGTGCCCCCACCCCTATACCCCT
ATAATATCTGTAACTTCTCCTAAAAAGGTTTCACTTCAGACTTTGGTTTGGTTTGGTTTT
TTAAAGAAAAAAGAAAATGAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAAAAACTGCCTGTCGGCAGCAGAGGACAAGAAGCTGAAGTCAGTGGCGTTCCCACCC
TTCCCCAGCGGCAGAAACTGCTTCCCCAAACAGACGGCAGCCCAGGTGACCCTCAAAGCC
ATCTCGGCCCACTTCGATGACTCGAGCGCGTCCTCGCTGAAGAACGTCTACTTCCTGCTC
TTCGACAGCGAGAGCATCGGCATCTACGTGCAGGAGATGGCCAAGCTCGATGCCAAGTAG
CCGCCGCGCTCGCCGCCGGGAACCAGGAGGATCGAAGTCACAGGAGCGGGGTTTTATTTT
TCAAAAGGAGAGAGGAAGGGTGACGGCAGGGGAGCGGGTAGCAGAGGCTGCAGGAGCAGG
TCCTGCCCACGGGAAGAGCCCGCTGCGTTTTTATATTCTCGTTAAAAAGAGCCTCAGTCC
GTAATTAACCAGGTCTCCACGAGGGGTTTCTTTCCATCTGTTTTCTTCCTGTTGTTTTAG
AACTTTTTTAAAAAAAAACAGACTTCGTTTTAGATTTATAGCATTGACTTTTACACACAC
ACACACAATCCTCTCAAAATTCTTAAAATCTTCTGTTTCTCCTTTTTGCAAGGGAAGAGG
GCATAAAAGTGAGTTGGGATTTGGTGGCTGTCTGTACTCAGTGATGCAAAGAAGAAAATT
GGAAAGGCATCTCACGGGTGCTTTTCTTTGCTGTTTTAGTGCCCCCACCCCTATACCCCT
ATAATATCTGTAACTTCTCCTAAAAAGGTTTCACTTCAGACTTTGGTTTGGTTTGGTTTT
TTAAAGAAAAAAGAAAATGAAAGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9CTH9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CTH9_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               45-804, gnl|bosTau2|chr28 (19459812-19459000)
               

               
               45-804, gnl|Hg17|chr10 (71541247-71542009)
               

               
               45-804, gnl|Mm7|chr10 (61257953-61257137)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-804, gnl|bosTau2|chr28 (19459812-19459000)
               

               
               45-804, gnl|Hg17|chr10 (71541247-71542009)
               

               
               45-804, gnl|Mm7|chr10 (61257953-61257137)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               eye (0.682012)
               

               
               fce (0.543183)
               

               
               elu (0.385356)
               

               
               nlu (0.191681)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.682012)
               

               
               fce (0.543183)
               

               
               elu (0.385356)
               

               
               nlu (0.191681)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

	45-804, gnl\|bosTau2\|chr28 (19459812-19459000)
	45-804, gnl\|Hg17\|chr10 (71541247-71542009)
	45-804, gnl\|Mm7\|chr10 (61257953-61257137)

	eye (0.682012)
	fce (0.543183)
	elu (0.385356)
	nlu (0.191681)
	bla (0.124347)
	ebs (0.118301)