Ss1.1-Pig4-TMW8032M24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAGCTCTCCGCCCGAAGAGGAAGATGCAGACCTTTCTGAAAGGGAAGAGAGTTGGCTA CTGGCTGAGCGAGAAGAAAATCAAGAAGCTGAATTTCCAGGCCTTCGCCGAGCTGTGCAG GAAGCGAGGGATCGAAGTCGTGCAGCTGAACCTCAGCCGGCCGATTGAGGAGCAGGGCCC CCTGGATGTCATCATCCACAAGCTGACCGATGTCATCCTCGAAGCCGACCAGAATGACAG CCAGTCCCTGGAGCTGGTGCACAGGTTCCAGGAATACATCGATGCCCACCCCGAGACCAT TGTCCTGGACCCCCTTCCTGCCATCAGGACCCTGCTCGATCGGTCCAAGTCCTACGAGCT CATCCGGAAGATCGAAGCCTACATGCAAGATGACAGGATCTGCTCGCCGCCCTTCATGGA GCTCACGAGCCTGTGCGGGGACGACACCATGCAGCTCCTGGAGAAGAACGGCCTGGCCTT CCCCTTCATTTGCAAAACCAGAGTGGCTCATGGCACCAACTCCCACGAGATGGCCATCGT GTTCAACCAGGAGGGCTTGAGCGCCATCCAGCCGCCCTGCGTGGTCCAGAATTTCATCAA CCACAACGCCGTCCTGTACAAGGTGTTTGTAGTCGGCGAGTCCTACACCGTGGTCCAGAG ACCCTCGCTCAAGAACTTCTCCGCGGGCACGTCAGACCGTGAGTCCATCTTCTTCAACAG CCACAACGTGTCGAAGCCAGAGTCGTCGTCGGTCCTGACCGCGCTGGACAAGATCGAGGG CGTGTTCGAGCGACCGAGCGACGAGGTCATCCGGGCGCTGTCCCGGGCCCTGCGGCAGGC GCTGGGCGTGTCGCTCTTCGGGATCGACATCATTATCAACAACCAGACGGGGCAGCACGC GGTCATCGACATCAACGCCTTCCCGGGCTACGAGGGCGTGAGCGAGTTCTTCACCGACCT CCTGAACCACATCGCCTCGGTGCTGCAGGGCCAGAGCGCGGCCGCGGCGGCCTCGGGGGA CGTGGCCCCGCTGAGGCACAGCAAGCTCCTGGCAGAGCAGGCGGGTGGCCTGGCGGCTGA GCGGACGTGCAGCGCCAGCCCCGGCTGCTGCAGCAGCATGATGGGCCAGGAGCCGCCCTG GACGTCCGAGGCTGATGTGGGCGGCGTGGGCGCGGGCAGCACCGCCAAGCTGCCGCACCA GAGACTCGGCTGCACCGCCGCCGTGTCGCCCAGCTTCCAGCAGCATTGCGTGGCCTCGCT GGCCACCAAGGCCTCCTCCCAGTAGCCACGGAGCCCGGGACCCAGAGGGGTGGCGCACGG AGCACACGCGCTGGGCAAGCAGCTCCCGACGGTGACGCTACTACTAAGAATTCCCGACGA TCTGATTCTTCTTCTTCCTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAGCTCTCCGCCCGAAGAGGAAGATGCAGACCTTTCTGAAAGGGAAGAGAGTTGGCTA CTGGCTGAGCGAGAAGAAAATCAAGAAGCTGAATTTCCAGGCCTTCGCCGAGCTGTGCAG GAAGCGAGGGATCGAAGTCGTGCAGCTGAACCTCAGCCGGCCGATTGAGGAGCAGGGCCC CCTGGATGTCATCATCCACAAGCTGACCGATGTCATCCTCGAAGCCGACCAGAATGACAG CCAGTCCCTGGAGCTGGTGCACAGGTTCCAGGAATACATCGATGCCCACCCCGAGACCAT TGTCCTGGACCCCCTTCCTGCCATCAGGACCCTGCTCGATCGGTCCAAGTCCTACGAGCT CATCCGGAAGATCGAAGCCTACATGCAAGATGACAGGATCTGCTCGCCGCCCTTCATGGA GCTCACGAGCCTGTGCGGGGACGACACCATGCAGCTCCTGGAGAAGAACGGCCTGGCCTT CCCCTTCATTTGCAAAACCAGAGTGGCTCATGGCACCAACTCCCACGAGATGGCCATCGT GTTCAACCAGGAGGGCTTGAGCGCCATCCAGCCGCCCTGCGTGGTCCAGAATTTCATCAA CCACAACGCCGTCCTGTACAAGGTGTTTGTAGTCGGCGAGTCCTACACCGTGGTCCAGAG ACCCTCGCTCAAGAACTTCTCCGCGGGCACGTCAGACCGTGAGTCCATCTTCTTCAACAG CCACAACGTGTCGAAGCCAGAGTCGTCGTCGGTCCTGACCGCGCTGGACAAGATCGAGGG CGTGTTCGAGCGACCGAGCGACGAGGTCATCCGGGCGCTGTCCCGGGCCCTGCGGCAGGC GCTGGGCGTGTCGCTCTTCGGGATCGACATCATTATCAACAACCAGACGGGGCAGCACGC GGTCATCGACATCAACGCCTTCCCGGGCTACGAGGGCGTGAGCGAGTTCTTCACCGACCT CCTGAACCACATCGCCTCGGTGCTGCAGGGCCAGAGCGCGGCCGCGGCGGCCTCGGGGGA CGTGGCCCCGCTGAGGCACAGCAAGCTCCTGGCAGAGCAGGCGGGTGGCCTGGCGGCTGA GCGGACGTGCAGCGCCAGCCCCGGCTGCTGCAGCAGCATGATGGGCCAGGAGCCGCCCTG GACGTCCGAGGCTGATGTGGGCGGCGTGGGCGCGGGCAGCACCGCCAAGCTGCCGCACCA GAGACTCGGCTGCACCGCCGCCGTGTCGCCCAGCTTCCAGCAGCATTGCGTGGCCTCGCT GGCCACCAAGGCCTCCTCCCAGTAGCCACGGAGCCCGGGACCCAGAGGGGTGGCGCACGG AGCACACGCGCTGGGCAAGCAGCTCCCGACGGTGACGCTACTACTAAGAATTCCCGACGA TCTGATTCTTCTTCTTCCTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1165-1284, - strand, RNAz p=0.519382 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1165-1284, - strand, RNAz p=0.519382 |
| Aligned organism(s): 104 entry(ies) | More info |
| Aligned organism(s): 104 entry(ies) | Help | Less info |
| 1-131, gnl|bosTau2|chr21 (38485185-38485315) | |
| 1-131, gnl|canFam2|chr8 (5133520-5133640) | |
| 1-131, gnl|canFam2|chr8 (5133521-5133643) | |
| 1-131, gnl|danRer3|chrNA (216137012-216137128) | |
| 1-131, gnl|danRer3|chrNA (216137009-216137124) | |
| 1-131, gnl|echTel1|scaffold_248747 (251-370) | |
| 1-131, gnl|echTel1|scaffold_248747 (249-373) | |
| 1-131, gnl|fr1|chrUn (69900624-69900725) | |
| 1-131, gnl|fr1|chrUn (69900626-69900736) | |
| 1-131, gnl|galGal2|chr5 (41844475-41844582) | |
| 1-131, gnl|hg17|chr14 (92651157-92651278) | |
| 1-131, gnl|Hg17|chr14 (92651286-92651156) | |
| 1-131, gnl|hg17|chrX (46773745-46773872) | |
| 1-131, gnl|mm7|chr12 (100200006-100200113) | |
| 1-131, gnl|mm7|chr12 (100200006-100200113) | |
| 1-131, gnl|Mm7|chr12 (100200138-100200005) | |
| 1-131, gnl|oryCun1|scaffold_119857 (806-919) | |
| 1-131, gnl|oryCun1|scaffold_119857 (805-922) | |
| 1-131, gnl|panTro1|chr15 (93069600-93069721) | |
| 1-131, gnl|panTro1|chr15 (93069600-93069724) | |
| 1-131, gnl|rheMac2|chr7 (156318864-156318985) | |
| 1-131, gnl|rheMac2|chrX (44989041-44989169) | |
| 1-131, gnl|rn3|chr6 (126972993-126973100) | |
| 1-131, gnl|rn3|chr6 (126972993-126973100) | |
| 1-131, gnl|tetNig1|chr10 (5412481-5412382) | |
| 1-131, gnl|tetNig1|chr10 (5412479-5412382) | |
| 1-131, gnl|xenTro1|scaffold_7399 (7700-7564) | |
| 142-272, gnl|bosTau2|chr21 (38604286-38604416) | |
| 142-272, gnl|canFam2|chr8 (5040553-5040688) | |
| 142-272, gnl|canFam2|chr8 (5040562-5040686) | |
| 142-272, gnl|danRer3|chr20 (40105915-40105792) | |
| 142-272, gnl|danRer3|chrNA (216094634-216094769) | |
| 142-272, gnl|dasNov1|scaffold_71332 (4429-4564) | |
| 142-272, gnl|dasNov1|scaffold_71332 (4433-4562) | |
| 142-272, gnl|echTel1|scaffold_290134 (5396-5262) | |
| 142-272, gnl|echTel1|scaffold_290134 (5392-5263) | |
| 142-272, gnl|fr1|chrUn (69893805-69893937) | |
| 142-272, gnl|fr1|chrUn (69893814-69893935) | |
| 142-272, gnl|galGal2|chr5 (41776047-41776182) | |
| 142-272, gnl|hg17|chr14 (92552770-92552905) | |
| 142-272, gnl|Hg17|chr14 (92552903-92552773) | |
| 142-272, gnl|hg17|chrX (46773299-46773434) | |
| 142-272, gnl|loxAfr1|scaffold_7947 (39044-38908) | |
| 142-272, gnl|loxAfr1|scaffold_7947 (39028-38907) | |
| 142-272, gnl|mm7|chr12 (100118590-100118725) | |
| 142-272, gnl|mm7|chr12 (100118594-100118725) | |
| 142-272, gnl|Mm7|chr12 (100118723-100118593) | |
| 142-272, gnl|oryCun1|scaffold_210700 (49962-50097) | |
| 142-272, gnl|oryCun1|scaffold_210700 (49966-50101) | |
| 142-272, gnl|panTro1|chr15 (92969281-92969416) | |
| 142-272, gnl|panTro1|chr15 (92969285-92969414) | |
| 142-272, gnl|rheMac2|chr7 (156214874-156215009) | |
| 142-272, gnl|rheMac2|chrX (44988583-44988721) | |
| 142-272, gnl|rn3|chr6 (126894901-126895036) | |
| 142-272, gnl|rn3|chr6 (126894905-126895040) | |
| 142-272, gnl|tetNig1|chr10 (5418456-5418324) | |
| 142-272, gnl|tetNig1|chr10 (5418447-5418326) | |
| 388-488, gnl|bosTau2|chr21 (36073999-36074099) | |
| 388-488, gnl|canFam2|chr8 (4993297-4993419) | |
| 388-488, gnl|danRer3|chrNA (216060763-216060896) | |
| 388-488, gnl|dasNov1|scaffold_74302 (1330-1210) | |
| 388-488, gnl|echTel1|scaffold_55612 (1260-1139) | |
| 388-488, gnl|fr1|chrUn (69888037-69888157) | |
| 388-488, gnl|galGal2|chr5 (41732624-41732746) | |
| 388-488, gnl|hg17|chr14 (92498843-92498964) | |
| 388-488, gnl|Hg17|chr14 (92498949-92498849) | |
| 388-488, gnl|mm7|chr12 (100083752-100083871) | |
| 388-488, gnl|Mm7|chr12 (100083858-100083758) | |
| 388-488, gnl|oryCun1|scaffold_106640 (878-993) | |
| 388-488, gnl|rheMac2|chr7 (156157375-156157496) | |
| 388-488, gnl|rn3|chr6 (126860843-126860961) | |
| 388-488, gnl|tetNig1|chr10 (5423589-5423469) | |
| 388-488, gnl|xenTro1|scaffold_22 (3143046-3143152) | |
| 506-695, gnl|bosTau2|chr21 (36078215-36078404) | |
| 506-695, gnl|canFam2|chr8 (4989195-4989406) | |
| 506-695, gnl|canFam2|chr8 (4989210-4989377) | |
| 506-695, gnl|danRer3|chr20 (40117419-40117268) | |
| 506-695, gnl|danRer3|chrNA (216054741-216054935) | |
| 506-695, gnl|echTel1|scaffold_55612 (3778-3565) | |
| 506-695, gnl|echTel1|scaffold_55612 (3763-3596) | |
| 506-695, gnl|fr1|chrUn (69887374-69887557) | |
| 506-695, gnl|fr1|chrUn (69887391-69887542) | |
| 506-695, gnl|galGal2|chr5 (41725683-41725895) | |
| 506-695, gnl|galGal2|chr5 (41725704-41725861) | |
| 506-695, gnl|hg17|chr14 (92494283-92494496) | |
| 506-695, gnl|Hg17|chr14 (92494488-92494299) | |
| 506-695, gnl|hg17|chrX (46772876-46773041) | |
| 506-695, gnl|mm7|chr12 (100079558-100079777) | |
| 506-695, gnl|mm7|chr12 (100079582-100079747) | |
| 506-695, gnl|Mm7|chr12 (100079769-100079581) | |
| 506-695, gnl|oryCun1|scaffold_210898 (20731-20532) | |
| 506-695, gnl|oryCun1|scaffold_210898 (20713-20555) | |
| 506-695, gnl|panTro1|chr15 (92907786-92907999) | |
| 506-695, gnl|panTro1|chr15 (92907807-92907968) | |
| 506-695, gnl|rheMac2|chr7 (156152857-156153070) | |
| 506-695, gnl|rheMac2|chrX (44988168-44988330) | |
| 506-695, gnl|rn3|chr6 (126856990-126857204) | |
| 506-695, gnl|rn3|chr6 (126857009-126857174) | |
| 506-695, gnl|tetNig1|chr10 (5424210-5424035) | |
| 506-695, gnl|tetNig1|chr10 (5424193-5424042) | |
| 506-695, gnl|xenTro1|scaffold_22 (3139117-3139292) | |
| 926-1397, gnl|bosTau2|chr21 (36093664-36094143) | |
| 926-1397, gnl|Hg17|chr14 (92478003-92477549) | |
| 926-1397, gnl|Mm7|chr12 (100065779-100065317) |
| Aligned organism(s): 104 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-131, gnl|bosTau2|chr21 (38485185-38485315) | |
| 1-131, gnl|canFam2|chr8 (5133520-5133640) | |
| 1-131, gnl|canFam2|chr8 (5133521-5133643) | |
| 1-131, gnl|danRer3|chrNA (216137012-216137128) | |
| 1-131, gnl|danRer3|chrNA (216137009-216137124) | |
| 1-131, gnl|echTel1|scaffold_248747 (251-370) | |
| 1-131, gnl|echTel1|scaffold_248747 (249-373) | |
| 1-131, gnl|fr1|chrUn (69900624-69900725) | |
| 1-131, gnl|fr1|chrUn (69900626-69900736) | |
| 1-131, gnl|galGal2|chr5 (41844475-41844582) | |
| 1-131, gnl|hg17|chr14 (92651157-92651278) | |
| 1-131, gnl|Hg17|chr14 (92651286-92651156) | |
| 1-131, gnl|hg17|chrX (46773745-46773872) | |
| 1-131, gnl|mm7|chr12 (100200006-100200113) | |
| 1-131, gnl|mm7|chr12 (100200006-100200113) | |
| 1-131, gnl|Mm7|chr12 (100200138-100200005) | |
| 1-131, gnl|oryCun1|scaffold_119857 (806-919) | |
| 1-131, gnl|oryCun1|scaffold_119857 (805-922) | |
| 1-131, gnl|panTro1|chr15 (93069600-93069721) | |
| 1-131, gnl|panTro1|chr15 (93069600-93069724) | |
| 1-131, gnl|rheMac2|chr7 (156318864-156318985) | |
| 1-131, gnl|rheMac2|chrX (44989041-44989169) | |
| 1-131, gnl|rn3|chr6 (126972993-126973100) | |
| 1-131, gnl|rn3|chr6 (126972993-126973100) | |
| 1-131, gnl|tetNig1|chr10 (5412481-5412382) | |
| 1-131, gnl|tetNig1|chr10 (5412479-5412382) | |
| 1-131, gnl|xenTro1|scaffold_7399 (7700-7564) | |
| 142-272, gnl|bosTau2|chr21 (38604286-38604416) | |
| 142-272, gnl|canFam2|chr8 (5040553-5040688) | |
| 142-272, gnl|canFam2|chr8 (5040562-5040686) | |
| 142-272, gnl|danRer3|chr20 (40105915-40105792) | |
| 142-272, gnl|danRer3|chrNA (216094634-216094769) | |
| 142-272, gnl|dasNov1|scaffold_71332 (4429-4564) | |
| 142-272, gnl|dasNov1|scaffold_71332 (4433-4562) | |
| 142-272, gnl|echTel1|scaffold_290134 (5396-5262) | |
| 142-272, gnl|echTel1|scaffold_290134 (5392-5263) | |
| 142-272, gnl|fr1|chrUn (69893805-69893937) | |
| 142-272, gnl|fr1|chrUn (69893814-69893935) | |
| 142-272, gnl|galGal2|chr5 (41776047-41776182) | |
| 142-272, gnl|hg17|chr14 (92552770-92552905) | |
| 142-272, gnl|Hg17|chr14 (92552903-92552773) | |
| 142-272, gnl|hg17|chrX (46773299-46773434) | |
| 142-272, gnl|loxAfr1|scaffold_7947 (39044-38908) | |
| 142-272, gnl|loxAfr1|scaffold_7947 (39028-38907) | |
| 142-272, gnl|mm7|chr12 (100118590-100118725) | |
| 142-272, gnl|mm7|chr12 (100118594-100118725) | |
| 142-272, gnl|Mm7|chr12 (100118723-100118593) | |
| 142-272, gnl|oryCun1|scaffold_210700 (49962-50097) | |
| 142-272, gnl|oryCun1|scaffold_210700 (49966-50101) | |
| 142-272, gnl|panTro1|chr15 (92969281-92969416) | |
| 142-272, gnl|panTro1|chr15 (92969285-92969414) | |
| 142-272, gnl|rheMac2|chr7 (156214874-156215009) | |
| 142-272, gnl|rheMac2|chrX (44988583-44988721) | |
| 142-272, gnl|rn3|chr6 (126894901-126895036) | |
| 142-272, gnl|rn3|chr6 (126894905-126895040) | |
| 142-272, gnl|tetNig1|chr10 (5418456-5418324) | |
| 142-272, gnl|tetNig1|chr10 (5418447-5418326) | |
| 388-488, gnl|bosTau2|chr21 (36073999-36074099) | |
| 388-488, gnl|canFam2|chr8 (4993297-4993419) | |
| 388-488, gnl|danRer3|chrNA (216060763-216060896) | |
| 388-488, gnl|dasNov1|scaffold_74302 (1330-1210) | |
| 388-488, gnl|echTel1|scaffold_55612 (1260-1139) | |
| 388-488, gnl|fr1|chrUn (69888037-69888157) | |
| 388-488, gnl|galGal2|chr5 (41732624-41732746) | |
| 388-488, gnl|hg17|chr14 (92498843-92498964) | |
| 388-488, gnl|Hg17|chr14 (92498949-92498849) | |
| 388-488, gnl|mm7|chr12 (100083752-100083871) | |
| 388-488, gnl|Mm7|chr12 (100083858-100083758) | |
| 388-488, gnl|oryCun1|scaffold_106640 (878-993) | |
| 388-488, gnl|rheMac2|chr7 (156157375-156157496) | |
| 388-488, gnl|rn3|chr6 (126860843-126860961) | |
| 388-488, gnl|tetNig1|chr10 (5423589-5423469) | |
| 388-488, gnl|xenTro1|scaffold_22 (3143046-3143152) | |
| 506-695, gnl|bosTau2|chr21 (36078215-36078404) | |
| 506-695, gnl|canFam2|chr8 (4989195-4989406) | |
| 506-695, gnl|canFam2|chr8 (4989210-4989377) | |
| 506-695, gnl|danRer3|chr20 (40117419-40117268) | |
| 506-695, gnl|danRer3|chrNA (216054741-216054935) | |
| 506-695, gnl|echTel1|scaffold_55612 (3778-3565) | |
| 506-695, gnl|echTel1|scaffold_55612 (3763-3596) | |
| 506-695, gnl|fr1|chrUn (69887374-69887557) | |
| 506-695, gnl|fr1|chrUn (69887391-69887542) | |
| 506-695, gnl|galGal2|chr5 (41725683-41725895) | |
| 506-695, gnl|galGal2|chr5 (41725704-41725861) | |
| 506-695, gnl|hg17|chr14 (92494283-92494496) | |
| 506-695, gnl|Hg17|chr14 (92494488-92494299) | |
| 506-695, gnl|hg17|chrX (46772876-46773041) | |
| 506-695, gnl|mm7|chr12 (100079558-100079777) | |
| 506-695, gnl|mm7|chr12 (100079582-100079747) | |
| 506-695, gnl|Mm7|chr12 (100079769-100079581) | |
| 506-695, gnl|oryCun1|scaffold_210898 (20731-20532) | |
| 506-695, gnl|oryCun1|scaffold_210898 (20713-20555) | |
| 506-695, gnl|panTro1|chr15 (92907786-92907999) | |
| 506-695, gnl|panTro1|chr15 (92907807-92907968) | |
| 506-695, gnl|rheMac2|chr7 (156152857-156153070) | |
| 506-695, gnl|rheMac2|chrX (44988168-44988330) | |
| 506-695, gnl|rn3|chr6 (126856990-126857204) | |
| 506-695, gnl|rn3|chr6 (126857009-126857174) | |
| 506-695, gnl|tetNig1|chr10 (5424210-5424035) | |
| 506-695, gnl|tetNig1|chr10 (5424193-5424042) | |
| 506-695, gnl|xenTro1|scaffold_22 (3139117-3139292) | |
| 926-1397, gnl|bosTau2|chr21 (36093664-36094143) | |
| 926-1397, gnl|Hg17|chr14 (92478003-92477549) | |
| 926-1397, gnl|Mm7|chr12 (100065779-100065317) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| clu (0.119646) |