Ss1.1-Pig4-TMW8032N19.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTTATGCCTTGGCAGGTGTGAGCTTTGAGATAAAAGCCGAAGACGACCAGCCCCTCCC CGGGGTCCTCTTATCCCTCAGCGGGGGCGTGTTTCGTTCCAACCTCTTGACTCAGGACAA CGGCATTCTGACCTTCTCGAATCTGAGCCCTGGCCAGTATTACTTCAAGCCCATGATGAA GGAATTCCGGTTCGAGCCATCCTCGCAGATGATCGAGGTGCAGGAAGGGCAGAACCTGAA GATCACCATCACCGGCTACCGCACGGCCTACAGTTGCTATGGTACAGTTTCTTCCTTAAA CGGAGAACCAGAACAGGGTGTTGCCGTGGAAGCGGTGGGCCAGAACGACTGCAGTATTTA TGGAGAAGACACTGTGACAGACGAAGAGGGGAAATTCAGGTTACGTGGACTGCTGCCGGG CTGTGTGTACCACGTTCAGCTCAAGGCAGAAGGCAACGACCACATTGAACGGGCCCTCCC CCACCACCGGGTCATTACGGTCGGGAATAATGACATCGATGATGTGAACATCATTGTTTT CCGGCAGATAAATCAGTTTGACTTAAGTGGAAACGTGATCACTTCCTCCGAGTATCTTCC TACATTGTGGGTAAAGCTTTACAAAAGTGACAACCTCGACAACCCAATCCAGACGGTGTC CCTGGGCCAGTCCCTCTTCTTCCACTTCCCGCCGCTGCTCAGAGACGGCCAGAATTACGT GGTGCTTCTGGACTCCACGCTGCCCAAGTCCCAGTACGACTACGTCCTGCCACAGGTGAC CTTCACAGCGGCCGGCTACCACAAACACATCACCCTCATCTTCAATCCTGCGAGGAAGCT GCCTGAGCAGGACATCGCGCAAGGCTCCTACATTGCCCTGCCCCTGACGCTGCTCGTGCT GCTGGCCGGCTACAACCACGATAAGCTCATTCCCTTGCTGTTGCAGCTGACAAGCCGGCT GCAAGGAGTCCGAGCCCTTGGCCAGACGGCCTCTGACGGGAGCGGCCCTGAAGACGCAAA GAGACAAGCCAAGAAACAGAAGACGAGGCGGACGTGAGGAGAAGAGGCCGCGGAGCCCTC CCTCGGGACAGGCCCCGCCCGGGGTCCCCCTCCGGCCCCTGGCGTGAGAGACGCACGTGA CTCACGTCAACGCCGCTGGTGGCCCCCGTGCACCTCCGTGGGCGCAGCTGCCTGTCCCCG CCTTCCCCCCAGTCTAGCCCCTGGTGCAATGCCGTGAATGGACCCTCCTGTCACTCTGCT GAGCACAATTTATTTTCTGAGTTGAAGATAATTTATTATTATTATTTTTTGTCAAAGAGG TATTTAAGCTGTGCTGGTGGTGTGAGAATGTAATTCTTAATGTCCAGTGTTCACCTGCTA GAAGAGTTCCGGTAAACGTGGGGTTTGGCCCCCTCACAAGCACCTGTTGGATTTACCTTT CCTTTAACTCCCCTTTGCATCTGAGGTCCCTGCTAGAAACCGCACAGCCTCTCCCTACTA CTCGGAGGGCATGTTAGGAGGTAAAAATCAATAAAATTGCCCGTTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTTATGCCTTGGCAGGTGTGAGCTTTGAGATAAAAGCCGAAGACGACCAGCCCCTCCC CGGGGTCCTCTTATCCCTCAGCGGGGGCGTGTTTCGTTCCAACCTCTTGACTCAGGACAA CGGCATTCTGACCTTCTCGAATCTGAGCCCTGGCCAGTATTACTTCAAGCCCATGATGAA GGAATTCCGGTTCGAGCCATCCTCGCAGATGATCGAGGTGCAGGAAGGGCAGAACCTGAA GATCACCATCACCGGCTACCGCACGGCCTACAGTTGCTATGGTACAGTTTCTTCCTTAAA CGGAGAACCAGAACAGGGTGTTGCCGTGGAAGCGGTGGGCCAGAACGACTGCAGTATTTA TGGAGAAGACACTGTGACAGACGAAGAGGGGAAATTCAGGTTACGTGGACTGCTGCCGGG CTGTGTGTACCACGTTCAGCTCAAGGCAGAAGGCAACGACCACATTGAACGGGCCCTCCC CCACCACCGGGTCATTACGGTCGGGAATAATGACATCGATGATGTGAACATCATTGTTTT CCGGCAGATAAATCAGTTTGACTTAAGTGGAAACGTGATCACTTCCTCCGAGTATCTTCC TACATTGTGGGTAAAGCTTTACAAAAGTGACAACCTCGACAACCCAATCCAGACGGTGTC CCTGGGCCAGTCCCTCTTCTTCCACTTCCCGCCGCTGCTCAGAGACGGCCAGAATTACGT GGTGCTTCTGGACTCCACGCTGCCCAAGTCCCAGTACGACTACGTCCTGCCACAGGTGAC CTTCACAGCGGCCGGCTACCACAAACACATCACCCTCATCTTCAATCCTGCGAGGAAGCT GCCTGAGCAGGACATCGCGCAAGGCTCCTACATTGCCCTGCCCCTGACGCTGCTCGTGCT GCTGGCCGGCTACAACCACGATAAGCTCATTCCCTTGCTGTTGCAGCTGACAAGCCGGCT GCAAGGAGTCCGAGCCCTTGGCCAGACGGCCTCTGACGGGAGCGGCCCTGAAGACGCAAA GAGACAAGCCAAGAAACAGAAGACGAGGCGGACGTGAGGAGAAGAGGCCGCGGAGCCCTC CCTCGGGACAGGCCCCGCCCGGGGTCCCCCTCCGGCCCCTGGCGTGAGAGACGCACGTGA CTCACGTCAACGCCGCTGGTGGCCCCCGTGCACCTCCGTGGGCGCAGCTGCCTGTCCCCG CCTTCCCCCCAGTCTAGCCCCTGGTGCAATGCCGTGAATGGACCCTCCTGTCACTCTGCT GAGCACAATTTATTTTCTGAGTTGAAGATAATTTATTATTATTATTTTTTGTCAAAGAGG TATTTAAGCTGTGCTGGTGGTGTGAGAATGTAATTCTTAATGTCCAGTGTTCACCTGCTA GAAGAGTTCCGGTAAACGTGGGGTTTGGCCCCCTCACAAGCACCTGTTGGATTTACCTTT CCTTTAACTCCCCTTTGCATCTGAGGTCCCTGCTAGAAACCGCACAGCCTCTCCCTACTA CTCGGAGGGCATGTTAGGAGGTAAAAATCAATAAAATTGCCCGTTTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 924-1042, - strand, RNAz p=0.562532 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 924-1042, - strand, RNAz p=0.562532 |
| Aligned organism(s): 96 entry(ies) | More info |
| Aligned organism(s): 96 entry(ies) | Help | Less info |
| 30-145, gnl|bosTau2|chr25 (16336399-16336284) | |
| 30-145, gnl|canFam2|chr6 (30785262-30785190) | |
| 30-145, gnl|echTel1|scaffold_293385 (39912-39984) | |
| 30-145, gnl|fr1|chrUn (84561860-84561788) | |
| 30-145, gnl|galGal2|chr14 (9791102-9791174) | |
| 30-145, gnl|hg17|chr16 (14880078-14880150) | |
| 30-145, gnl|Hg17|chr16 (18436127-18436012) | |
| 30-145, gnl|mm7|chr7 (42246156-42246228) | |
| 30-145, gnl|Mm7|chr7 (42246155-42246270) | |
| 30-145, gnl|monDom2|scaffold_19 (36267676-36267748) | |
| 30-145, gnl|panTro1|chr18 (18865867-18865795) | |
| 30-145, gnl|rheMac2|chr20 (15996187-15996259) | |
| 30-145, gnl|rn3|chr1 (96645018-96645090) | |
| 30-145, gnl|tetNig1|chr18 (4740620-4740548) | |
| 30-145, gnl|xenTro1|scaffold_214 (268468-268540) | |
| 272-415, gnl|bosTau2|chr25 (16334350-16334207) | |
| 272-415, gnl|canFam2|chr6 (30783245-30783074) | |
| 272-415, gnl|dasNov1|scaffold_11215 (22104-22275) | |
| 272-415, gnl|echTel1|scaffold_293385 (42234-42404) | |
| 272-415, gnl|fr1|chrUn (84561405-84561257) | |
| 272-415, gnl|galGal2|chr14 (9792585-9792755) | |
| 272-415, gnl|hg17|chr16 (14882896-14883067) | |
| 272-415, gnl|Hg17|chr16 (18433308-18433165) | |
| 272-415, gnl|loxAfr1|scaffold_14913 (5472-5643) | |
| 272-415, gnl|mm7|chr7 (42248726-42248893) | |
| 272-415, gnl|Mm7|chr7 (42248730-42248873) | |
| 272-415, gnl|monDom2|scaffold_19 (36269215-36269380) | |
| 272-415, gnl|oryCun1|scaffold_129700 (333-167) | |
| 272-415, gnl|panTro1|chr18 (18863040-18862869) | |
| 272-415, gnl|rheMac2|chr20 (15998949-15999120) | |
| 272-415, gnl|rn3|chr1 (96648355-96648522) | |
| 272-415, gnl|tetNig1|chr18 (4740181-4740028) | |
| 272-415, gnl|xenTro1|scaffold_214 (269754-269912) | |
| 499-617, gnl|bosTau2|chr25 (16328625-16328507) | |
| 499-617, gnl|canFam2|chr6 (30778249-30778146) | |
| 499-617, gnl|dasNov1|scaffold_11215 (26312-26409) | |
| 499-617, gnl|echTel1|scaffold_293385 (47357-47458) | |
| 499-617, gnl|fr1|chrUn (84560418-84560315) | |
| 499-617, gnl|galGal2|chr14 (9794394-9794485) | |
| 499-617, gnl|hg17|chr16 (14885715-14885818) | |
| 499-617, gnl|Hg17|chr16 (18430479-18430361) | |
| 499-617, gnl|loxAfr1|scaffold_10518 (12488-12387) | |
| 499-617, gnl|mm7|chr7 (42254250-42254348) | |
| 499-617, gnl|Mm7|chr7 (42254259-42254375) | |
| 499-617, gnl|monDom2|scaffold_19 (36277609-36277706) | |
| 499-617, gnl|oryCun1|scaffold_144555 (4705-4605) | |
| 499-617, gnl|panTro1|chr18 (15269403-15269505) | |
| 499-617, gnl|rheMac2|chr20 (16001587-16001690) | |
| 499-617, gnl|rn3|chr1 (96651494-96651591) | |
| 499-617, gnl|tetNig1|chr18 (4739057-4738957) | |
| 499-617, gnl|xenTro1|scaffold_214 (272471-272563) | |
| 710-828, gnl|bosTau2|chr25 (16325864-16325746) | |
| 710-828, gnl|canFam2|chr6 (30774808-30774661) | |
| 710-828, gnl|echTel1|scaffold_56767 (551-731) | |
| 710-828, gnl|fr1|chrUn (84560043-84559914) | |
| 710-828, gnl|galGal2|chr14 (9795316-9795478) | |
| 710-828, gnl|hg17|chr16 (14890420-14890584) | |
| 710-828, gnl|Hg17|chr16 (18425754-18425636) | |
| 710-828, gnl|loxAfr1|scaffold_10518 (8534-8361) | |
| 710-828, gnl|mm7|chr7 (42257610-42257759) | |
| 710-828, gnl|Mm7|chr7 (42257626-42257744) | |
| 710-828, gnl|monDom2|scaffold_19 (36281550-36281714) | |
| 710-828, gnl|oryCun1|scaffold_183984 (19576-19414) | |
| 710-828, gnl|panTro1|chr18 (18855198-18855034) | |
| 710-828, gnl|rheMac2|chr20 (16007003-16007167) | |
| 710-828, gnl|rn3|chr1 (96654747-96654893) | |
| 710-828, gnl|tetNig1|chr18 (4738705-4738549) | |
| 710-828, gnl|xenTro1|scaffold_214 (275798-275950) | |
| 924-1059, gnl|bosTau2|chr25 (16322737-16322602) | |
| 924-1059, gnl|canFam2|chr6 (30767485-30767330) | |
| 924-1059, gnl|echTel1|scaffold_180209 (3291-3450) | |
| 924-1059, gnl|fr1|chrUn (84559697-84559537) | |
| 924-1059, gnl|galGal2|chr14 (9798740-9798894) | |
| 924-1059, gnl|hg17|chr16 (14896848-14897004) | |
| 924-1059, gnl|Hg17|chr16 (18419328-18419193) | |
| 924-1059, gnl|loxAfr1|scaffold_10518 (5931-5770) | |
| 924-1059, gnl|mm7|chr7 (42259823-42259969) | |
| 924-1059, gnl|Mm7|chr7 (42259835-42259970) | |
| 924-1059, gnl|monDom2|scaffold_19 (36282983-36283146) | |
| 924-1059, gnl|panTro1|chr18 (18848659-18848503) | |
| 924-1059, gnl|rheMac2|chr20 (16013358-16013514) | |
| 924-1059, gnl|rn3|chr1 (96656949-96657104) | |
| 924-1059, gnl|tetNig1|chr18 (4738330-4738175) | |
| 924-1059, gnl|xenTro1|scaffold_214 (277258-277401) | |
| 1171-1548, gnl|bosTau2|chr25 (16322548-16322176) | |
| 1171-1548, gnl|canFam2|chr6 (30767271-30766921) | |
| 1171-1548, gnl|echTel1|scaffold_180209 (3508-3894) | |
| 1171-1548, gnl|hg17|chr16 (14897062-14897423) | |
| 1171-1548, gnl|Hg17|chr16 (18419090-18418698) | |
| 1171-1548, gnl|loxAfr1|scaffold_10518 (5717-5379) | |
| 1171-1548, gnl|mm7|chr7 (42260014-42260343) | |
| 1171-1548, gnl|Mm7|chr7 (42260055-42260431) | |
| 1171-1548, gnl|monDom2|scaffold_19 (36283217-36283582) | |
| 1171-1548, gnl|panTro1|chr18 (18848445-18848077) | |
| 1171-1548, gnl|rheMac2|chr20 (16013571-16013928) | |
| 1171-1548, gnl|rn3|chr1 (96657149-96657478) |
| Aligned organism(s): 96 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 30-145, gnl|bosTau2|chr25 (16336399-16336284) | |
| 30-145, gnl|canFam2|chr6 (30785262-30785190) | |
| 30-145, gnl|echTel1|scaffold_293385 (39912-39984) | |
| 30-145, gnl|fr1|chrUn (84561860-84561788) | |
| 30-145, gnl|galGal2|chr14 (9791102-9791174) | |
| 30-145, gnl|hg17|chr16 (14880078-14880150) | |
| 30-145, gnl|Hg17|chr16 (18436127-18436012) | |
| 30-145, gnl|mm7|chr7 (42246156-42246228) | |
| 30-145, gnl|Mm7|chr7 (42246155-42246270) | |
| 30-145, gnl|monDom2|scaffold_19 (36267676-36267748) | |
| 30-145, gnl|panTro1|chr18 (18865867-18865795) | |
| 30-145, gnl|rheMac2|chr20 (15996187-15996259) | |
| 30-145, gnl|rn3|chr1 (96645018-96645090) | |
| 30-145, gnl|tetNig1|chr18 (4740620-4740548) | |
| 30-145, gnl|xenTro1|scaffold_214 (268468-268540) | |
| 272-415, gnl|bosTau2|chr25 (16334350-16334207) | |
| 272-415, gnl|canFam2|chr6 (30783245-30783074) | |
| 272-415, gnl|dasNov1|scaffold_11215 (22104-22275) | |
| 272-415, gnl|echTel1|scaffold_293385 (42234-42404) | |
| 272-415, gnl|fr1|chrUn (84561405-84561257) | |
| 272-415, gnl|galGal2|chr14 (9792585-9792755) | |
| 272-415, gnl|hg17|chr16 (14882896-14883067) | |
| 272-415, gnl|Hg17|chr16 (18433308-18433165) | |
| 272-415, gnl|loxAfr1|scaffold_14913 (5472-5643) | |
| 272-415, gnl|mm7|chr7 (42248726-42248893) | |
| 272-415, gnl|Mm7|chr7 (42248730-42248873) | |
| 272-415, gnl|monDom2|scaffold_19 (36269215-36269380) | |
| 272-415, gnl|oryCun1|scaffold_129700 (333-167) | |
| 272-415, gnl|panTro1|chr18 (18863040-18862869) | |
| 272-415, gnl|rheMac2|chr20 (15998949-15999120) | |
| 272-415, gnl|rn3|chr1 (96648355-96648522) | |
| 272-415, gnl|tetNig1|chr18 (4740181-4740028) | |
| 272-415, gnl|xenTro1|scaffold_214 (269754-269912) | |
| 499-617, gnl|bosTau2|chr25 (16328625-16328507) | |
| 499-617, gnl|canFam2|chr6 (30778249-30778146) | |
| 499-617, gnl|dasNov1|scaffold_11215 (26312-26409) | |
| 499-617, gnl|echTel1|scaffold_293385 (47357-47458) | |
| 499-617, gnl|fr1|chrUn (84560418-84560315) | |
| 499-617, gnl|galGal2|chr14 (9794394-9794485) | |
| 499-617, gnl|hg17|chr16 (14885715-14885818) | |
| 499-617, gnl|Hg17|chr16 (18430479-18430361) | |
| 499-617, gnl|loxAfr1|scaffold_10518 (12488-12387) | |
| 499-617, gnl|mm7|chr7 (42254250-42254348) | |
| 499-617, gnl|Mm7|chr7 (42254259-42254375) | |
| 499-617, gnl|monDom2|scaffold_19 (36277609-36277706) | |
| 499-617, gnl|oryCun1|scaffold_144555 (4705-4605) | |
| 499-617, gnl|panTro1|chr18 (15269403-15269505) | |
| 499-617, gnl|rheMac2|chr20 (16001587-16001690) | |
| 499-617, gnl|rn3|chr1 (96651494-96651591) | |
| 499-617, gnl|tetNig1|chr18 (4739057-4738957) | |
| 499-617, gnl|xenTro1|scaffold_214 (272471-272563) | |
| 710-828, gnl|bosTau2|chr25 (16325864-16325746) | |
| 710-828, gnl|canFam2|chr6 (30774808-30774661) | |
| 710-828, gnl|echTel1|scaffold_56767 (551-731) | |
| 710-828, gnl|fr1|chrUn (84560043-84559914) | |
| 710-828, gnl|galGal2|chr14 (9795316-9795478) | |
| 710-828, gnl|hg17|chr16 (14890420-14890584) | |
| 710-828, gnl|Hg17|chr16 (18425754-18425636) | |
| 710-828, gnl|loxAfr1|scaffold_10518 (8534-8361) | |
| 710-828, gnl|mm7|chr7 (42257610-42257759) | |
| 710-828, gnl|Mm7|chr7 (42257626-42257744) | |
| 710-828, gnl|monDom2|scaffold_19 (36281550-36281714) | |
| 710-828, gnl|oryCun1|scaffold_183984 (19576-19414) | |
| 710-828, gnl|panTro1|chr18 (18855198-18855034) | |
| 710-828, gnl|rheMac2|chr20 (16007003-16007167) | |
| 710-828, gnl|rn3|chr1 (96654747-96654893) | |
| 710-828, gnl|tetNig1|chr18 (4738705-4738549) | |
| 710-828, gnl|xenTro1|scaffold_214 (275798-275950) | |
| 924-1059, gnl|bosTau2|chr25 (16322737-16322602) | |
| 924-1059, gnl|canFam2|chr6 (30767485-30767330) | |
| 924-1059, gnl|echTel1|scaffold_180209 (3291-3450) | |
| 924-1059, gnl|fr1|chrUn (84559697-84559537) | |
| 924-1059, gnl|galGal2|chr14 (9798740-9798894) | |
| 924-1059, gnl|hg17|chr16 (14896848-14897004) | |
| 924-1059, gnl|Hg17|chr16 (18419328-18419193) | |
| 924-1059, gnl|loxAfr1|scaffold_10518 (5931-5770) | |
| 924-1059, gnl|mm7|chr7 (42259823-42259969) | |
| 924-1059, gnl|Mm7|chr7 (42259835-42259970) | |
| 924-1059, gnl|monDom2|scaffold_19 (36282983-36283146) | |
| 924-1059, gnl|panTro1|chr18 (18848659-18848503) | |
| 924-1059, gnl|rheMac2|chr20 (16013358-16013514) | |
| 924-1059, gnl|rn3|chr1 (96656949-96657104) | |
| 924-1059, gnl|tetNig1|chr18 (4738330-4738175) | |
| 924-1059, gnl|xenTro1|scaffold_214 (277258-277401) | |
| 1171-1548, gnl|bosTau2|chr25 (16322548-16322176) | |
| 1171-1548, gnl|canFam2|chr6 (30767271-30766921) | |
| 1171-1548, gnl|echTel1|scaffold_180209 (3508-3894) | |
| 1171-1548, gnl|hg17|chr16 (14897062-14897423) | |
| 1171-1548, gnl|Hg17|chr16 (18419090-18418698) | |
| 1171-1548, gnl|loxAfr1|scaffold_10518 (5717-5379) | |
| 1171-1548, gnl|mm7|chr7 (42260014-42260343) | |
| 1171-1548, gnl|Mm7|chr7 (42260055-42260431) | |
| 1171-1548, gnl|monDom2|scaffold_19 (36283217-36283582) | |
| 1171-1548, gnl|panTro1|chr18 (18848445-18848077) | |
| 1171-1548, gnl|rheMac2|chr20 (16013571-16013928) | |
| 1171-1548, gnl|rn3|chr1 (96657149-96657478) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| fce (0.271592) | |
| eep (0.245128) | |
| col (0.195008) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eru (0.120048) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| eep (0.245128) | |
| col (0.195008) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eru (0.120048) | |
| jca (0.11396) | |
| jej (0.0989218) |