Ss1.1-Pig4-TMW8032O07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGCCCGTCAGGTAGTCCCACTCCTCCCTCCAGTAACACACAGGAGGAAGCACAGCCAT CCGGTGCGTCTGATTTAAGTCCTATGGCCATGCCTTTTGCCTCTACTTCCGAACCTGCTC CATTGACTTTGGCGTCACCCAGATTGGTTGCTGCTGATAATCAGGATACCAGTAATTTAC CTCACTTAGCTCTACCAGCTCCTCGAGTTTCTCATCGAATGCAGCCTAGAGGTTCTTTTT ATTCGGTGGTGCCGAATGCAACTATACACCAGGATCCCCAGTCTATTTTTGTTACAAATC CAGTTCCTATAACACCACCTCAAGGCCCGCCAGCTGCAGTGCAGCTTTCTTCAGCCATGA ACATTATGAATGGTTCTCAGATGCACATTAACCCAGCAAATAAATCTTTGCCACCTACGT TTGGCCCAGCCACGCTTTTCAATCACTTCAGTAGTCTTTTTGATAACAGTCAGGTGCCAG CTAACCAGGGGTGGGGAGATGGTCCGCTGTCCTCACGAGTTGCCGCGGATGCCTCTTTCA CTGTTCAGTCGGCATTCCTGGGCAACTCTGTACTTGGACACTTGGAAAACGTGCACCCTG ACAACTCCAAGGCACCTGGCTTCACATCTGTTTCTTAGCGAGTTTCTACACCTCTTTCAG CCACTTCTGCACCGCCAACACTGGGCCAACCCAAAGGAGGCAGTGCCAGTCAGGATCGAA AGATACCTCCCCCTATTGGAACGGAGAGACTAGCGCGGATTCGGCAAGGAGGGTCTGTTG CACAAGCCCCCGTGGGGACCAGTTTTGTCGCTCCTGTTGGACACAGTGGAATCTGGTCAT TTGGCGTCAATGCCGTATCAGAAGGCTTATCAGGTTGGTCACAGTCTGTGATAGGGAACC ATCCAATGCATCAACAATTATCAGACCCAAGCACATTCTCTCAGCATCAACCAATGGAGC GAGATGATTCTGGAATGGTAGCCCCTTCTAACATTTTTCATCAGCCTATGGCAAGCAGTT TTGTGGATTTTTCTAAAGGTCTGCCGATTTCCATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGCCCGTCAGGTAGTCCCACTCCTCCCTCCAGTAACACACAGGAGGAAGCACAGCCAT CCGGTGCGTCTGATTTAAGTCCTATGGCCATGCCTTTTGCCTCTACTTCCGAACCTGCTC CATTGACTTTGGCGTCACCCAGATTGGTTGCTGCTGATAATCAGGATACCAGTAATTTAC CTCACTTAGCTCTACCAGCTCCTCGAGTTTCTCATCGAATGCAGCCTAGAGGTTCTTTTT ATTCGGTGGTGCCGAATGCAACTATACACCAGGATCCCCAGTCTATTTTTGTTACAAATC CAGTTCCTATAACACCACCTCAAGGCCCGCCAGCTGCAGTGCAGCTTTCTTCAGCCATGA ACATTATGAATGGTTCTCAGATGCACATTAACCCAGCAAATAAATCTTTGCCACCTACGT TTGGCCCAGCCACGCTTTTCAATCACTTCAGTAGTCTTTTTGATAACAGTCAGGTGCCAG CTAACCAGGGGTGGGGAGATGGTCCGCTGTCCTCACGAGTTGCCGCGGATGCCTCTTTCA CTGTTCAGTCGGCATTCCTGGGCAACTCTGTACTTGGACACTTGGAAAACGTGCACCCTG ACAACTCCAAGGCACCTGGCTTCACATCTGTTTCTTAGCGAGTTTCTACACCTCTTTCAG CCACTTCTGCACCGCCAACACTGGGCCAACCCAAAGGAGGCAGTGCCAGTCAGGATCGAA AGATACCTCCCCCTATTGGAACGGAGAGACTAGCGCGGATTCGGCAAGGAGGGTCTGTTG CACAAGCCCCCGTGGGGACCAGTTTTGTCGCTCCTGTTGGACACAGTGGAATCTGGTCAT TTGGCGTCAATGCCGTATCAGAAGGCTTATCAGGTTGGTCACAGTCTGTGATAGGGAACC ATCCAATGCATCAACAATTATCAGACCCAAGCACATTCTCTCAGCATCAACCAATGGAGC GAGATGATTCTGGAATGGTAGCCCCTTCTAACATTTTTCATCAGCCTATGGCAAGCAGTT TTGTGGATTTTTCTAAAGGTCTGCCGATTTCCATGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 240-359, - strand, RNAz p=0.543226 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 240-359, - strand, RNAz p=0.543226 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-649, gnl|bosTau2|chr7 (30595855-30595207) | |
| 1-649, gnl|Hg17|chr5 (139888906-139889554) | |
| 1-649, gnl|Mm7|chr18 (37024285-37024933) | |
| 860-1038, gnl|bosTau2|chr7 (30590346-30590168) | |
| 860-1038, gnl|canFam2|chr2 (38585246-38585438) | |
| 860-1038, gnl|danRer3|chrNA (215271436-215271625) | |
| 860-1038, gnl|dasNov1|scaffold_2163 (19943-19751) | |
| 860-1038, gnl|echTel1|scaffold_308760 (3244-3052) | |
| 860-1038, gnl|fr1|chrUn (109671888-109671687) | |
| 860-1038, gnl|galGal2|chr13 (924815-925003) | |
| 860-1038, gnl|hg17|chr5 (139897849-139898041) | |
| 860-1038, gnl|Hg17|chr5 (139897853-139898031) | |
| 860-1038, gnl|loxAfr1|scaffold_3706 (45706-45890) | |
| 860-1038, gnl|mm7|chr18 (37032884-37033077) | |
| 860-1038, gnl|Mm7|chr18 (37032888-37033067) | |
| 860-1038, gnl|monDom2|scaffold_6 (68229404-68229203) | |
| 860-1038, gnl|oryCun1|scaffold_206493 (55192-55000) | |
| 860-1038, gnl|panTro1|chr4 (146515097-146515289) | |
| 860-1038, gnl|rheMac2|chr6 (136952409-136952601) | |
| 860-1038, gnl|rn3|chr18 (29322840-29323032) | |
| 860-1038, gnl|tetNig1|chr1 (2381995-2381798) | |
| 860-1038, gnl|xenTro1|scaffold_307 (1244441-1244252) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-649, gnl|bosTau2|chr7 (30595855-30595207) | |
| 1-649, gnl|Hg17|chr5 (139888906-139889554) | |
| 1-649, gnl|Mm7|chr18 (37024285-37024933) | |
| 860-1038, gnl|bosTau2|chr7 (30590346-30590168) | |
| 860-1038, gnl|canFam2|chr2 (38585246-38585438) | |
| 860-1038, gnl|danRer3|chrNA (215271436-215271625) | |
| 860-1038, gnl|dasNov1|scaffold_2163 (19943-19751) | |
| 860-1038, gnl|echTel1|scaffold_308760 (3244-3052) | |
| 860-1038, gnl|fr1|chrUn (109671888-109671687) | |
| 860-1038, gnl|galGal2|chr13 (924815-925003) | |
| 860-1038, gnl|hg17|chr5 (139897849-139898041) | |
| 860-1038, gnl|Hg17|chr5 (139897853-139898031) | |
| 860-1038, gnl|loxAfr1|scaffold_3706 (45706-45890) | |
| 860-1038, gnl|mm7|chr18 (37032884-37033077) | |
| 860-1038, gnl|Mm7|chr18 (37032888-37033067) | |
| 860-1038, gnl|monDom2|scaffold_6 (68229404-68229203) | |
| 860-1038, gnl|oryCun1|scaffold_206493 (55192-55000) | |
| 860-1038, gnl|panTro1|chr4 (146515097-146515289) | |
| 860-1038, gnl|rheMac2|chr6 (136952409-136952601) | |
| 860-1038, gnl|rn3|chr18 (29322840-29323032) | |
| 860-1038, gnl|tetNig1|chr1 (2381995-2381798) | |
| 860-1038, gnl|xenTro1|scaffold_307 (1244441-1244252) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.142714) |