Non-Coding RNA Search

Ss1.1-Pig4-TMW8032O08.3

Sequence:


               
               TGTTGCTTCAAAGAAAAGGCTGCCAAAAAACAAAAATTAAATAGGGTGAAAAATTAAGTT
GTCTTTTTGCCATCATGGGTTTCACACCACAGTCTTGTGGTGTAGGTAGGAGGACCTGTC
CCTTGATCCTTGAAAACCCTTCCAGGAACTGAAAAAATGTTGGTTGTGGAAAAGAATGAC
AGAAAGATACTCCTATGAGGGGAAAAAAGGCAGAATATCACTGTTGATAAAGAAGTTGAC
CATGAGGAAATTATTCTGTAATCTCTACTGAAATACGGAATTCCAGGAACTCTCTTGTGG
CACAGTGGGTTAAGGATCCGGTGTTGTTGATGCAGCAGCTTGGGTTTGAACCCTGGCCTG
GGAACTTCCACATGCCATAGGCGTGGCCAAAAAAAAAAAAAGAAAGAAAAAGAAATATGG
AATTCCATGCTGGGGGAGTAAGACTTAATTCTACTGCATGTGTTTCTGCCTTGAGAAACG
TTCCCTTTTCCCAGTGTTAAAATCTCAAATGTGCTTTGGTGCCACCCACTGGCCATAGGT
GGAATTCAGTTTTGAGCTTAATTAGTCCTAAGTCTCAAGCCTGTATTTTGTTATAGAGCA
CGCCCATATGTTAAAAAAACAAAAACGAAACCCTCACATATATGATTCTGTTTTCCTTAT
ATCTCTACTACATTGAAAGCAGCATGAGCGTGGTCACAGACATGCCCTGCAACAAAGTTT
TAATTTGAATGTAAATTGTTAAATTATATTGTACTTCTTATGTATGTATAATATAATTTT
CATAAAATATTTTGTAAAACCCTTAGCATAAATTATTATATGATTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGCTTCAAAGAAAAGGCTGCCAAAAAACAAAAATTAAATAGGGTGAAAAATTAAGTT
GTCTTTTTGCCATCATGGGTTTCACACCACAGTCTTGTGGTGTAGGTAGGAGGACCTGTC
CCTTGATCCTTGAAAACCCTTCCAGGAACTGAAAAAATGTTGGTTGTGGAAAAGAATGAC
AGAAAGATACTCCTATGAGGGGAAAAAAGGCAGAATATCACTGTTGATAAAGAAGTTGAC
CATGAGGAAATTATTCTGTAATCTCTACTGAAATACGGAATTCCAGGAACTCTCTTGTGG
CACAGTGGGTTAAGGATCCGGTGTTGTTGATGCAGCAGCTTGGGTTTGAACCCTGGCCTG
GGAACTTCCACATGCCATAGGCGTGGCCAAAAAAAAAAAAAGAAAGAAAAAGAAATATGG
AATTCCATGCTGGGGGAGTAAGACTTAATTCTACTGCATGTGTTTCTGCCTTGAGAAACG
TTCCCTTTTCCCAGTGTTAAAATCTCAAATGTGCTTTGGTGCCACCCACTGGCCATAGGT
GGAATTCAGTTTTGAGCTTAATTAGTCCTAAGTCTCAAGCCTGTATTTTGTTATAGAGCA
CGCCCATATGTTAAAAAAACAAAAACGAAACCCTCACATATATGATTCTGTTTTCCTTAT
ATCTCTACTACATTGAAAGCAGCATGAGCGTGGTCACAGACATGCCCTGCAACAAAGTTT
TAATTTGAATGTAAATTGTTAAATTATATTGTACTTCTTATGTATGTATAATATAATTTT
CATAAAATATTTTGTAAAACCCTTAGCATAAATTATTATATGATTAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-285, gnl|bosTau2|chr29 (4386734-4386450)
               

               
               1-285, gnl|Hg17|chr11 (85083631-85083353)
               

               
               1-285, gnl|Mm7|chr7 (86416691-86416925)
               


               
               412-828, gnl|bosTau2|chr29 (4386465-4386058)
               

               
               412-828, gnl|Hg17|chr11 (85083368-85082979)
               

               
               412-828, gnl|Mm7|chr7 (86416910-86417320)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-285, gnl|bosTau2|chr29 (4386734-4386450)
               

               
               1-285, gnl|Hg17|chr11 (85083631-85083353)
               

               
               1-285, gnl|Mm7|chr7 (86416691-86416925)
               


               
               412-828, gnl|bosTau2|chr29 (4386465-4386058)
               

               
               412-828, gnl|Hg17|chr11 (85083368-85082979)
               

               
               412-828, gnl|Mm7|chr7 (86416910-86417320)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               aor (0.585823)
               

               
               gul (0.355177)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               lin (0.145603)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.585823)
               

               
               gul (0.355177)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               lin (0.145603)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               spc (0.113366)

	1-285, gnl\|bosTau2\|chr29 (4386734-4386450)
	1-285, gnl\|Hg17\|chr11 (85083631-85083353)
	1-285, gnl\|Mm7\|chr7 (86416691-86416925)

	412-828, gnl\|bosTau2\|chr29 (4386465-4386058)
	412-828, gnl\|Hg17\|chr11 (85083368-85082979)
	412-828, gnl\|Mm7\|chr7 (86416910-86417320)

	aor (0.585823)
	gul (0.355177)
	fce (0.271592)
	kid (0.259471)
	cbe (0.239234)
	col (0.195008)
	fbs (0.175346)
	rec (0.17307)
	mcp (0.170648)
	lin (0.145603)
	ese (0.126502)
	eep (0.122564)
	spc (0.113366)