Non-Coding RNA Search

Ss1.1-Pig4-TMW8032O22.5

Sequence:


               
               CATAAACCTCCATCTTAGCTTTTGTTTTAAGCAGAAACTACATAACATGCATAGCATGGT
AAGTTTAGATTGCTTAATTGGAGTAAACCTCAGAATAACAGAGGGAAATATGGCCTCTTC
AGCGCCCTTTTTTCTTTTTTTTGGAATTGAAGTGGTAGCCTACAGATGTAGTTTAAACGT
TATCTAAAATGTAGGCTTCTTTATCCAAATATCCCAATGTCTCGCAGTACACAGATAGTT
TAAAAATATGTAGCCATGGGGGATGGGAGGTATATAAATTCTTGAAATGGAACTAAAGTG
TGAAAGATGATAGTGACAAATAATGTGTATGATGAGGACATACTTTAAAAATGTAATTCC
TCTGTACAGTAAATTACAAATCTTGAGGGTTTTTTTTTTTTTTTTTGTAATAAGAGAATT
TATATTTGTAATGGTCTTAAGAATTTTGTCTGTAATCTGGTATATAGAATTTTAACATGG
AGCACTTATGAGAAGCAGAGTAAGAGACTATAGCATCTGGATTTTCTTTGTTTCAGTTTC
AACATTTTTCTTTAAAATTTTTCCTCTCAAATATGACTTAAATGAATTATAAAAAAAGCT
TCCTCAGTCTTGGGAAATTTAAAATTTGATGAACTTACCTAGAGGACAGTTAAGAATTTT
AAAAATAAAAATACTTGTCTATTCACAGAAAATAAAATTTAAGGACTTCGAAAGTAAGAG
TGTTTGTTTCTCCGGTCAGCTTTTGTCAACTATAATAGTTCTGTTCACAAACATTTTGTA
ATTTGTCACATTGGAAGTTTAAGAAATTATTGCAACTATTTGCTATGGAAATATTTAAAA
TGTTCTTTTTTTTGATATAAGCTATGTACTTGGACAAAAATACATTGGCATCTAAAATTT
GGGGTGTGTTAAGACTTTTTTGTTTTAAAAATGTGGTTTACATTCAAATTTTTGAAGTGT
TTATGCTTCATATGGCTAAGTTGTAGTTTGGCAGAGTTAACAGCATAAGAATAAACATGC
TGTAAGTTTAAAAAATGCTTTGAATAAAAGTTTATTTTAATTTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATAAACCTCCATCTTAGCTTTTGTTTTAAGCAGAAACTACATAACATGCATAGCATGGT
AAGTTTAGATTGCTTAATTGGAGTAAACCTCAGAATAACAGAGGGAAATATGGCCTCTTC
AGCGCCCTTTTTTCTTTTTTTTGGAATTGAAGTGGTAGCCTACAGATGTAGTTTAAACGT
TATCTAAAATGTAGGCTTCTTTATCCAAATATCCCAATGTCTCGCAGTACACAGATAGTT
TAAAAATATGTAGCCATGGGGGATGGGAGGTATATAAATTCTTGAAATGGAACTAAAGTG
TGAAAGATGATAGTGACAAATAATGTGTATGATGAGGACATACTTTAAAAATGTAATTCC
TCTGTACAGTAAATTACAAATCTTGAGGGTTTTTTTTTTTTTTTTTGTAATAAGAGAATT
TATATTTGTAATGGTCTTAAGAATTTTGTCTGTAATCTGGTATATAGAATTTTAACATGG
AGCACTTATGAGAAGCAGAGTAAGAGACTATAGCATCTGGATTTTCTTTGTTTCAGTTTC
AACATTTTTCTTTAAAATTTTTCCTCTCAAATATGACTTAAATGAATTATAAAAAAAGCT
TCCTCAGTCTTGGGAAATTTAAAATTTGATGAACTTACCTAGAGGACAGTTAAGAATTTT
AAAAATAAAAATACTTGTCTATTCACAGAAAATAAAATTTAAGGACTTCGAAAGTAAGAG
TGTTTGTTTCTCCGGTCAGCTTTTGTCAACTATAATAGTTCTGTTCACAAACATTTTGTA
ATTTGTCACATTGGAAGTTTAAGAAATTATTGCAACTATTTGCTATGGAAATATTTAAAA
TGTTCTTTTTTTTGATATAAGCTATGTACTTGGACAAAAATACATTGGCATCTAAAATTT
GGGGTGTGTTAAGACTTTTTTGTTTTAAAAATGTGGTTTACATTCAAATTTTTGAAGTGT
TTATGCTTCATATGGCTAAGTTGTAGTTTGGCAGAGTTAACAGCATAAGAATAAACATGC
TGTAAGTTTAAAAAATGCTTTGAATAAAAGTTTATTTTAATTTAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               922-1039, - strand, RNAz p=0.846036

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               922-1039, - strand, RNAz p=0.846036

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1064, gnl|bosTau2|chr8 (45538452-45539485)
               

               
               1-1064, gnl|Hg17|chr9 (96228831-96227781)
               

               
               1-1064, gnl|Mm7|chr13 (61957447-61956404)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1064, gnl|bosTau2|chr8 (45538452-45539485)
               

               
               1-1064, gnl|Hg17|chr9 (96228831-96227781)
               

               
               1-1064, gnl|Mm7|chr13 (61957447-61956404)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               spl (0.143184)

	1-1064, gnl\|bosTau2\|chr8 (45538452-45539485)
	1-1064, gnl\|Hg17\|chr9 (96228831-96227781)
	1-1064, gnl\|Mm7\|chr13 (61957447-61956404)