Ss1.1-Pig4-TMW8032P01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAACACACCCGGCTCAGGGGACCGCGGGGGTCGCCGTCGGGGTAGCTGCGGGGCGCAGG ACCGGACTCGTGTGCGCCTGGCGAGCCCGGGAAACGCGGGGCCTGGCTCTGGACACGGCC TCGCGCCCTCGGAAAGCCGAGCCTTTGTGCCCCTCCGGGGTCTTCCCTGCCTTCGGCGCG ATGCGGCTCCCGGCCGGCCTCGGCGTCCTCTGCCTGGCGCTCTGCTGCCTGGGCGGCGCG CGCGAGCTCTGGAGTGGCGACCACGAGTGGAAAAAACTAATTATGGTTCACCACTGGCCT ATGACGGTGTGCAATGAAGTTGCAAACAACTGTGAACACCCTCCGGATTACTGGACGATA CACGGACTATGGCCTGATAAAAGCGGAGAGTGTAACCGATCCTGGCCCTTTAACCCCGAC GAGATCAAGGGCCTTTTGCCGGACATGAGGCTCTACTGGCCCGACGTGCTCCACTCGTCT CCCAACCACAGCGTCCACTTCTGGAGGCACGAGTGGGAGAAGCACGGCACCTGCGCTGCC CAGCTGGATGCCCTCAATTCCCAAAGGAAATACTTTGGCAAAACTCTGGATCTGTATAAG GAGCTTGCTCTGAACAGCACGCTCCAAAAGCTGGGGATAAAACCATCCATCAGTTACTAC CAGATTTCAGATATTAAGCATGCCCTGGTCGGTGTGTACGGAGTGGTGCCCAAAGTCCAG TGTCTTCCACCCAAATCGGGCGAGAAGGTGCAGACCCTCGGGCAGATAGAGCTGTGCCTG ACCAGGGACCTGCAGCTGCAAGACTGTCCAGAACCCGGGGAGCCGGCGCCCCAGAGGCAG GAAGCAGGGCCAGGAGGGACCCCGATCCTGGGGCTGGAGATCTGTGAGGACGGCCCGGTC TTTTACCCGCCCCCCAAAGAGACCAATCACTGAAAGAGTCTGCATTTTGAAAATCAAGAG ATGATGGGAAATCACCGCTTTTTACAAAGCAGCTCACAAGTGAAATCTGTTAACGGCCTT CGCTACCTAAGCCTGCTCTGTTGGGTTCTTTTCTGCCTTGATTGTCGTGGTGCAGGTACA AATGGCGCGAACACTGGCTACGCTGAAAGGGAGGAGAGCCCCCCACCTGATGGCTGCTTT GTGCTTGGAATCAAGCTTCTGGTTTTCTTTTTTCCTCCTCTCTCGCTCCCTGGAAGACAA GCAGGCACCCTTGGCCTTTGGGCCAGTGGTCCAGGTCCAGACGAACTCCCCTGTATCCCT CGGCCAGCTGCCTTCTTGCTCTGAGTACATGTCGGGGGGATGTTGGGACTGACGCCCAAG CAGGAGTCAGGCGACTTGGAGTGGGGCTGACAGCTCCTGTTCCACTTTCACCCGCCAGCA CCGCCGTGCCTGGGCATGGGTGTACCCTCTGAGGGCCCTGGTGCTGGCAGGGGAGTTGCT CTGGGTCCGGGGGCTGTAGGCTTCTTCTCTCTTCTCGCCAGAGGAAGTCTGGGGGTAGGA CTGAGTGCCAGCCAGCATCCCCCACCCCCAGCCCGTGGGCGTTCTTCCCCATGGGCCGGA AATCCTGCAGGTCAGCCTCTAGCAGCTTCCCCTTCCTTTCTGTCAGAAGGAAGCATCAGT ACCCAGAATGCTGTGGCTGCCCTGGCCCCAGGGGCAAGGCTGCACCCTCGGGCAGTGAGG CCAGCTGATGCACCCAGGCTCAGCTGCGCTGCTGCAGGCATCATCCTACCTGCCAGATGG CATTTCACCTGTAAAAGGAGCATCCCTGCTGGTCTGTGAATGGACTTCCCCTACTTTATT AAAACTGCTTTTCACGTTCAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAACACACCCGGCTCAGGGGACCGCGGGGGTCGCCGTCGGGGTAGCTGCGGGGCGCAGG ACCGGACTCGTGTGCGCCTGGCGAGCCCGGGAAACGCGGGGCCTGGCTCTGGACACGGCC TCGCGCCCTCGGAAAGCCGAGCCTTTGTGCCCCTCCGGGGTCTTCCCTGCCTTCGGCGCG ATGCGGCTCCCGGCCGGCCTCGGCGTCCTCTGCCTGGCGCTCTGCTGCCTGGGCGGCGCG CGCGAGCTCTGGAGTGGCGACCACGAGTGGAAAAAACTAATTATGGTTCACCACTGGCCT ATGACGGTGTGCAATGAAGTTGCAAACAACTGTGAACACCCTCCGGATTACTGGACGATA CACGGACTATGGCCTGATAAAAGCGGAGAGTGTAACCGATCCTGGCCCTTTAACCCCGAC GAGATCAAGGGCCTTTTGCCGGACATGAGGCTCTACTGGCCCGACGTGCTCCACTCGTCT CCCAACCACAGCGTCCACTTCTGGAGGCACGAGTGGGAGAAGCACGGCACCTGCGCTGCC CAGCTGGATGCCCTCAATTCCCAAAGGAAATACTTTGGCAAAACTCTGGATCTGTATAAG GAGCTTGCTCTGAACAGCACGCTCCAAAAGCTGGGGATAAAACCATCCATCAGTTACTAC CAGATTTCAGATATTAAGCATGCCCTGGTCGGTGTGTACGGAGTGGTGCCCAAAGTCCAG TGTCTTCCACCCAAATCGGGCGAGAAGGTGCAGACCCTCGGGCAGATAGAGCTGTGCCTG ACCAGGGACCTGCAGCTGCAAGACTGTCCAGAACCCGGGGAGCCGGCGCCCCAGAGGCAG GAAGCAGGGCCAGGAGGGACCCCGATCCTGGGGCTGGAGATCTGTGAGGACGGCCCGGTC TTTTACCCGCCCCCCAAAGAGACCAATCACTGAAAGAGTCTGCATTTTGAAAATCAAGAG ATGATGGGAAATCACCGCTTTTTACAAAGCAGCTCACAAGTGAAATCTGTTAACGGCCTT CGCTACCTAAGCCTGCTCTGTTGGGTTCTTTTCTGCCTTGATTGTCGTGGTGCAGGTACA AATGGCGCGAACACTGGCTACGCTGAAAGGGAGGAGAGCCCCCCACCTGATGGCTGCTTT GTGCTTGGAATCAAGCTTCTGGTTTTCTTTTTTCCTCCTCTCTCGCTCCCTGGAAGACAA GCAGGCACCCTTGGCCTTTGGGCCAGTGGTCCAGGTCCAGACGAACTCCCCTGTATCCCT CGGCCAGCTGCCTTCTTGCTCTGAGTACATGTCGGGGGGATGTTGGGACTGACGCCCAAG CAGGAGTCAGGCGACTTGGAGTGGGGCTGACAGCTCCTGTTCCACTTTCACCCGCCAGCA CCGCCGTGCCTGGGCATGGGTGTACCCTCTGAGGGCCCTGGTGCTGGCAGGGGAGTTGCT CTGGGTCCGGGGGCTGTAGGCTTCTTCTCTCTTCTCGCCAGAGGAAGTCTGGGGGTAGGA CTGAGTGCCAGCCAGCATCCCCCACCCCCAGCCCGTGGGCGTTCTTCCCCATGGGCCGGA AATCCTGCAGGTCAGCCTCTAGCAGCTTCCCCTTCCTTTCTGTCAGAAGGAAGCATCAGT ACCCAGAATGCTGTGGCTGCCCTGGCCCCAGGGGCAAGGCTGCACCCTCGGGCAGTGAGG CCAGCTGATGCACCCAGGCTCAGCTGCGCTGCTGCAGGCATCATCCTACCTGCCAGATGG CATTTCACCTGTAAAAGGAGCATCCCTGCTGGTCTGTGAATGGACTTCCCCTACTTTATT AAAACTGCTTTTCACGTTCAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 89-254, gnl|bosTau2|chr9 (64593021-64592858) | |
| 89-254, gnl|Hg17|chr6 (167340146-167339999) | |
| 503-617, gnl|bosTau2|chr9 (64579848-64579734) | |
| 503-617, gnl|canFam2|chr1 (57855665-57855551) | |
| 503-617, gnl|canFam2|chr1 (57855533-57855669) | |
| 503-617, gnl|dasNov1|scaffold_22893 (40935-40821) | |
| 503-617, gnl|dasNov1|scaffold_22893 (40808-40939) | |
| 503-617, gnl|echTel1|scaffold_277530 (38208-38110) | |
| 503-617, gnl|echTel1|scaffold_277530 (38092-38225) | |
| 503-617, gnl|hg17|chr6 (167322774-167322913) | |
| 503-617, gnl|Hg17|chr6 (167322908-167322794) | |
| 503-617, gnl|hg17|chr7 (56017859-56017965) | |
| 503-617, gnl|loxAfr1|scaffold_12160 (4803-4703) | |
| 503-617, gnl|loxAfr1|scaffold_48276 (6315-6185) | |
| 503-617, gnl|mm7|chr17 (6531587-6531701) | |
| 503-617, gnl|mm7|chr17 (6531718-6531583) | |
| 503-617, gnl|Mm7|chr17 (6531586-6531700) | |
| 503-617, gnl|monDom2|scaffold_0 (34728198-34728065) | |
| 503-617, gnl|monDom2|scaffold_143 (1934417-1934530) | |
| 503-617, gnl|panTro1|chr5 (171682086-171682225) | |
| 503-617, gnl|panTro1|chr6 (57713493-57713607) | |
| 503-617, gnl|rheMac2|chr3 (69984192-69984081) | |
| 503-617, gnl|rheMac2|chr4 (163877797-163877936) | |
| 503-617, gnl|rn3|chr1 (47241800-47241661) | |
| 503-617, gnl|rn3|chr3 (140162403-140162289) | |
| 738-1264, gnl|bosTau2|chr9 (64577429-64576896) | |
| 738-1264, gnl|Hg17|chr6 (167313691-167313147) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 89-254, gnl|bosTau2|chr9 (64593021-64592858) | |
| 89-254, gnl|Hg17|chr6 (167340146-167339999) | |
| 503-617, gnl|bosTau2|chr9 (64579848-64579734) | |
| 503-617, gnl|canFam2|chr1 (57855665-57855551) | |
| 503-617, gnl|canFam2|chr1 (57855533-57855669) | |
| 503-617, gnl|dasNov1|scaffold_22893 (40935-40821) | |
| 503-617, gnl|dasNov1|scaffold_22893 (40808-40939) | |
| 503-617, gnl|echTel1|scaffold_277530 (38208-38110) | |
| 503-617, gnl|echTel1|scaffold_277530 (38092-38225) | |
| 503-617, gnl|hg17|chr6 (167322774-167322913) | |
| 503-617, gnl|Hg17|chr6 (167322908-167322794) | |
| 503-617, gnl|hg17|chr7 (56017859-56017965) | |
| 503-617, gnl|loxAfr1|scaffold_12160 (4803-4703) | |
| 503-617, gnl|loxAfr1|scaffold_48276 (6315-6185) | |
| 503-617, gnl|mm7|chr17 (6531587-6531701) | |
| 503-617, gnl|mm7|chr17 (6531718-6531583) | |
| 503-617, gnl|Mm7|chr17 (6531586-6531700) | |
| 503-617, gnl|monDom2|scaffold_0 (34728198-34728065) | |
| 503-617, gnl|monDom2|scaffold_143 (1934417-1934530) | |
| 503-617, gnl|panTro1|chr5 (171682086-171682225) | |
| 503-617, gnl|panTro1|chr6 (57713493-57713607) | |
| 503-617, gnl|rheMac2|chr3 (69984192-69984081) | |
| 503-617, gnl|rheMac2|chr4 (163877797-163877936) | |
| 503-617, gnl|rn3|chr1 (47241800-47241661) | |
| 503-617, gnl|rn3|chr3 (140162403-140162289) | |
| 738-1264, gnl|bosTau2|chr9 (64577429-64576896) | |
| 738-1264, gnl|Hg17|chr6 (167313691-167313147) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| clu (1.07681) | |
| nco (0.485201) | |
| cag (0.453583) | |
| pla (0.401016) | |
| ute (0.398353) | |
| cly (0.361925) | |
| cga (0.279096) | |
| cov (0.264306) | |
| ese (0.253004) | |
| nep (0.183925) | |
| ill (0.175593) | |
| cli (0.152812) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (1.07681) | |
| nco (0.485201) | |
| cag (0.453583) | |
| pla (0.401016) | |
| ute (0.398353) | |
| cly (0.361925) | |
| cga (0.279096) | |
| cov (0.264306) | |
| ese (0.253004) | |
| nep (0.183925) | |
| ill (0.175593) | |
| cli (0.152812) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |