Non-Coding RNA Search

Ss1.1-Pig4-TMW8032P02.3

Sequence:


               
               CTTTGACATGGTGAACATCATGCTGCTCCGGTGCCACCCGCTCACCGTCCTGATCTTCCA
CGTGATCAACATCTGGCTGTCGGTGGAGGACCACTCCGGCTATGACTTCCCCTGGTCCAC
TCACAGACTAGTACCTTTCGGGTGGTATGGGGGCGTGACACACCACGACCTACATCACTC
CCAGTTTAACTGCAACTTCGCCCCTTACTTCACACACTGGGACAAAATACTGGGAACGCT
GCGGTCTGCTCATGCCAAGTAACATCCACCCCTCCCAGGCGCTCAGATCCTGTGCATTTC
ACACTTGAATCAGCAGAGACACTTGATGTGTTTTGTTTTGTTTTGTTTCTTTCAGTCAGT
AACTTATTATCTGATAGAAATGTATGGGAAAAACCTGTATTTTTTCACAGTTTGATAAAG
TAATTTATATAAAGTTTGTATATAAACAACTGTATTCTTGATGTAGAATTCTAGCTAACT
TCAATAGCCTTGATTTCTGGTGTAAAGTACCCAAAAATCACTGTCATATTTAAATGATCT
CTAAAAAGATTTGTTTGTAGAACAAGGAATTTACTATGTTTGACAGTGTCCAAGAACTAG
GCTAAAATAACTTTTTTATGGAGAATCTCATCTCTGACTCTGTAAACAATGAAACATGTT
CCTGCTGGACAGTGACCAAGATTATTATACTTTTTTCTATGTTTTCATAGAACTGTATAT
TTATATTGAAAGAAATGTTATTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGACATGGTGAACATCATGCTGCTCCGGTGCCACCCGCTCACCGTCCTGATCTTCCA
CGTGATCAACATCTGGCTGTCGGTGGAGGACCACTCCGGCTATGACTTCCCCTGGTCCAC
TCACAGACTAGTACCTTTCGGGTGGTATGGGGGCGTGACACACCACGACCTACATCACTC
CCAGTTTAACTGCAACTTCGCCCCTTACTTCACACACTGGGACAAAATACTGGGAACGCT
GCGGTCTGCTCATGCCAAGTAACATCCACCCCTCCCAGGCGCTCAGATCCTGTGCATTTC
ACACTTGAATCAGCAGAGACACTTGATGTGTTTTGTTTTGTTTTGTTTCTTTCAGTCAGT
AACTTATTATCTGATAGAAATGTATGGGAAAAACCTGTATTTTTTCACAGTTTGATAAAG
TAATTTATATAAAGTTTGTATATAAACAACTGTATTCTTGATGTAGAATTCTAGCTAACT
TCAATAGCCTTGATTTCTGGTGTAAAGTACCCAAAAATCACTGTCATATTTAAATGATCT
CTAAAAAGATTTGTTTGTAGAACAAGGAATTTACTATGTTTGACAGTGTCCAAGAACTAG
GCTAAAATAACTTTTTTATGGAGAATCTCATCTCTGACTCTGTAAACAATGAAACATGTT
CCTGCTGGACAGTGACCAAGATTATTATACTTTTTTCTATGTTTTCATAGAACTGTATAT
TTATATTGAAAGAAATGTTATTTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|47225808|emb|CAF98288.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|47225808|emb|CAF98288.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-276, gnl|bosTau2|chr26 (6546180-6545905)
               

               
               1-276, gnl|Hg17|chr10 (90956478-90956225)
               

               
               1-276, gnl|Mm7|chr19 (34175879-34175626)
               


               
               282-744, gnl|bosTau2|chr26 (6545865-6545390)
               

               
               282-744, gnl|Hg17|chr10 (90956190-90955710)
               

               
               282-744, gnl|Mm7|chr19 (34175584-34175118)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-276, gnl|bosTau2|chr26 (6546180-6545905)
               

               
               1-276, gnl|Hg17|chr10 (90956478-90956225)
               

               
               1-276, gnl|Mm7|chr19 (34175879-34175626)
               


               
               282-744, gnl|bosTau2|chr26 (6545865-6545390)
               

               
               282-744, gnl|Hg17|chr10 (90956190-90955710)
               

               
               282-744, gnl|Mm7|chr19 (34175584-34175118)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               cbe (0.239234)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	1-276, gnl\|bosTau2\|chr26 (6546180-6545905)
	1-276, gnl\|Hg17\|chr10 (90956478-90956225)
	1-276, gnl\|Mm7\|chr19 (34175879-34175626)

	282-744, gnl\|bosTau2\|chr26 (6545865-6545390)
	282-744, gnl\|Hg17\|chr10 (90956190-90955710)
	282-744, gnl\|Mm7\|chr19 (34175584-34175118)

	cbe (0.239234)
	gul (0.177588)
	sin (0.174948)
	rec (0.17307)
	mga (0.160205)
	fat (0.147427)
	liv (0.146284)
	csk (0.140746)
	jca (0.11396)
	nbm (0.0993246)