Ss1.1-Pig4-TMW8032P07.3
|
TTCCGCTTCCTTCCCGTAAGGAGTCGGGCCTCCCCCATTTTTCTGCCAAGGTGGTGGCGG
CGGCGGCTTGCGATGTTTGGCCTCCAGAGAAACGCAGTAATCGGACTCAACCTCTACTGT
GGGGGGGCCGGATTGGGGCCTGGAAGCGGCAGCAGCGCCTCCGCTCCGGGAGGCCGTCTC
TTGGCTACGGGAAAAGAGGCCACGGCCCGGCAAGAGGTAGGGGGAGGGGAAGCCGGCATG
GTGATTGGCGGAAGCGCCGGCGCGAGCCCCCCGTCCACTCCTGCGCCAGACGCCCGGAGG
GTCGCGCGGCCCTCGCCCATTGGCGCCGAGGGCCCCGACGTCACCGCGACCCCCGCCAGA
CTGCTGTTCTTCGCGCCCACCCGCCTCGCGTCGCCGCCTGAAGAGATGGAATCCCCGGCC
TCCGACGCCATCATGTCTCCCGAAGAGGAGCTGGACGGGTACGAGCCGGAGCCCCTCGGG
AAGCGGCCGGCCGTCCTGCCCTTGCTGGGGTTAGTCGAGGAGGCCAGTAGTGGCCCCGGC
ACGGACGGCTCGCTCCCCTCGACGCCGCCCCCGGCAGAGGAGGAGGAGGACGAGTTATAC
CGGCAGTCCCTGGAGATTATCTCTCGGTACCTTCGGGAGCAGGCAACCGGCGCCAAGGAC
GCGAAGCCAATGGGCGGGTCTGGGGCCGCCAGCCGGAAGGCGTTAGAGACCCTGCGACGG
GTCGGGGACGGGGTGCAGCGCAACCACGAGACGGCCTTCCAAGGCATGCTTCGGAAACTG
GACATCAAAAACGAAGACGATGTCAAATCTTTGTCTCGAGTGATGGTCCACGTTTTCAGT
GACGGAGTAACAAACTGGGGCAGGATTGTGACTCTTATTTCTTTTGGTGCCTTTGTGGCC
AAACACTTGAAGAGTATAAATCAAGAAAGCTGCATCGAACCGTTAGCAGAAAGCATCACA
GATGTTCTCGTAAGGACAAAACGAGACTGGCTAGTCAAACAAAGAGGCTGGGATGGGTTT
GTGGAGTTCTTCCATGTAGAGGACCTAGAAGGCGGCATCAGAAATGTGCTGCTGGCTTTT
GCAGGTGTTGCTGGAGTAGGAGCTGGTTTGGCATATCTAATAAGATAGCCTTTTAAGTGC
AATAATTGACTCTTAACCAACTCCAGCCACAAAATCCTACGTCTGTGAAATCAAATGTAT
TTATGAAGTTGGACTTCAGACTGTCTAGGCCATAATCTCCAAGAGGTCTACTCTAGCAAC
AGAGAAAAGCAAGTGGCAAGAGGATTATGACTGAAATAAATACCTGGGAAAAGTAGTTTC
CTTTGAAGAGTCACTGTCTGAAAGAAGCAGAATTCAGTTTCAGCAAAGTCAAACTTTGGG
AGGCCTTGAAGAGTACTTTTTAGACTTAGGGTCGATAGTAGGGTAAAGAGACTTTAATTA
CCTTGTCTAGAACAGGAAAGAGGCCAGTAGCCAGGCTAGTCCTAGAGTTCATTAAATATG
CCCACGGACTTCATTAACTTTCTTTAGTGTCAGAAGAGAAGCACTAACAACACCACTGGT
GTGTGTAAAGTGGATTTAAGCTACAGGTAATAGAACTATGATCTGAAGCCCCAATACTGT
ACAACAGCATGTGAAGGGAAGCTTTTTCCTCTCTATAACTAGCTTTTCCCAAGTGTTCTT
CTTGAATAGAAAGTCCAAGTGCTCAGGACATTTATACCTGTTCTGCTTTGGCTTGTGGTT
TGAGGGATTCTTTATTAGCCTCGTTTTAAGACAAAAACTTGTAAATGTATTTGTCTGTAA
AAATTGTATATATTTTTACAGAAAACCTTTCTTTCTCCCTTTGGAGAAAAGTCTCAAATT
TACATTAGTTTTTTCATACCCTTTTGAAATCTTTAACCTCTGTAGTTAGGAACCTGTTTC
TTACAGCTTTTCTATTCTGAACTTTGTTCCTGGTCGGTTCTAGATTGTATACAGAACCAA
CTGTTGTAATTGTATGCACCCTGTTATAGTGGAACAATTCTGACTCATAACTATGCAGGC
TTTAATTTTCCTGATTTTGATAAGTATTTCTTAAGGTTTTTTGTTGTTTTTTTAAACCTG
GGACTGAAAAATTGAGAAATGAAAATTAATTCTTTCACTTTATTACGTAATAGGTTTGCA
ATAATTGAGTCAAGATGGGGTTTTAAGATTTTATTTTGGGGGGTGGGACACATGGGCTGA
TGACTTAAAAATAATGGGCTCTGATTGGGCAACTACTCATTTGAGTTCCTTCTGGTATGA
TTTAACTAGTGAAATATAAACTGAGTTCATGAGCTCATCTTCAAAGCTTCTACTAAAAGA
TTTTCAGCTGTTCCAGATGGGACTTATTAGCAGTATGTATAAAAAGATCACATCAGGTGG
ATGTGAGACATATAATCCCTTGTTTGCCTAATAAATTGTACAGTGATAGCTTGGAAAAGC
AGACTATAGTTTAACCATGGTGCTATTATTAGGCTTGCTTGTTAAACACAGGTCTAAGCC
TACTGTGTCAATAAAACAAATACTTCATTTCTGTTAATAATGTTCAGACTTTGTTTCAGA
CTTTTGCATTGGCATCCATAGAGATTTCAGACTTGATGTTTTTATCAAACGTACCATATA
TTTCCTGTTTTTCTTTGAAATATTTGCTGCTTGTTGTGCTCCCTCAACACATATTTATAT
CAGTTCCTATAAATTTGCCATCCCTGAACTCTTGCTAGCCCTTTTTAGTTTTTGGCACTA
GGAACCCAAGTGACCACCCAAGGAGTCCACAGACTTTCATCCTTCATGAATTTTATCCTC
AGGAGGAGGTAGTACAGTGAGCTCTAACCTAACAGTTAAGAGGTGAGAAGAGTCCCTTTT
CCTTGAACTGGTTTCTTTTTTGGTTGTTGCTCAATCCTGTCTTTGGGGAGATAAAAGTCC
CCTTAGGGATTTTTCAGAGGAAGAGACCTTTTATGTGACTCTAGGTTCTTTTGCATTTGA
ATATGTTCACTTAAAATTATAGAAATTAATGGGCTCTGTTAAACCTCAAACCTCAAAGAG
TTATTTAAACTGGTAAGCTGAAGAAAACTTGTGTAGTGGAACCATGGTCATTTGAAAGCT
TCAGCCTCAGAATGTGACCTTTAGTGTGTGGACTCCAGACAAAAATAGGCATGAATAATA
TGACTAAGAATGTAATAGGGAAGAATTGCCCGGCCTGCCCATCTCCGAGCCATAACATCA
TCCAGATAGAGTTATTTTTACCTGTGTATTTATCGTTCTTGACCATAAACCACTTATTTA
TATCATGTCTCTCTCTAAGGACCTAAAAGCACTTTATGTAGTTAATTAATCTTAAGATCG
AATTAAGGTGACTGAAAGGCCTGTCTCCCCATAGCCACTTGTGGAAATAAGCACAGAGAT
GCCAATTGGTGGAGTTTAGGGTCCCCACTTCCCAACTTACTGGGTGTGACTGCTGAAATG
CAGATGAGAATCTTAAGTTGATATTTGGGGCAGGTTGGGTGATTCTATAGGGAAAGGAGG
CACCTGTTTTAAGTGCTGACTAGCTGTGTAGTTAGGCAGCTCCTCCAAAATGGAAAGGGA
GGAGCTGCTTGGAAAGATGTCTCTCTCAGCAACTGTCTGTCTGATGCTTCTCTCAGGGAA
AAACCTGCAGTCCTCTAGTGTGTCTGTGGTCTGTGTACATTCTGTTGGGGGTGAACACCT
TGGTTCTGGTTAAAACAGCTAAAAAGCTGTTGACAGCTGTGCCAGGAAGGGTTAGGACCA
ACTACAAATTAATGTGGGCTGTAAAAAGTAGTGTGTTTCCCTAACTTTCTGTTTTTCCTG
AGAAGAAAATAATAAATCTTTTATTCAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTCCGCTTCCTTCCCGTAAGGAGTCGGGCCTCCCCCATTTTTCTGCCAAGGTGGTGGCGG
CGGCGGCTTGCGATGTTTGGCCTCCAGAGAAACGCAGTAATCGGACTCAACCTCTACTGT
GGGGGGGCCGGATTGGGGCCTGGAAGCGGCAGCAGCGCCTCCGCTCCGGGAGGCCGTCTC
TTGGCTACGGGAAAAGAGGCCACGGCCCGGCAAGAGGTAGGGGGAGGGGAAGCCGGCATG
GTGATTGGCGGAAGCGCCGGCGCGAGCCCCCCGTCCACTCCTGCGCCAGACGCCCGGAGG
GTCGCGCGGCCCTCGCCCATTGGCGCCGAGGGCCCCGACGTCACCGCGACCCCCGCCAGA
CTGCTGTTCTTCGCGCCCACCCGCCTCGCGTCGCCGCCTGAAGAGATGGAATCCCCGGCC
TCCGACGCCATCATGTCTCCCGAAGAGGAGCTGGACGGGTACGAGCCGGAGCCCCTCGGG
AAGCGGCCGGCCGTCCTGCCCTTGCTGGGGTTAGTCGAGGAGGCCAGTAGTGGCCCCGGC
ACGGACGGCTCGCTCCCCTCGACGCCGCCCCCGGCAGAGGAGGAGGAGGACGAGTTATAC
CGGCAGTCCCTGGAGATTATCTCTCGGTACCTTCGGGAGCAGGCAACCGGCGCCAAGGAC
GCGAAGCCAATGGGCGGGTCTGGGGCCGCCAGCCGGAAGGCGTTAGAGACCCTGCGACGG
GTCGGGGACGGGGTGCAGCGCAACCACGAGACGGCCTTCCAAGGCATGCTTCGGAAACTG
GACATCAAAAACGAAGACGATGTCAAATCTTTGTCTCGAGTGATGGTCCACGTTTTCAGT
GACGGAGTAACAAACTGGGGCAGGATTGTGACTCTTATTTCTTTTGGTGCCTTTGTGGCC
AAACACTTGAAGAGTATAAATCAAGAAAGCTGCATCGAACCGTTAGCAGAAAGCATCACA
GATGTTCTCGTAAGGACAAAACGAGACTGGCTAGTCAAACAAAGAGGCTGGGATGGGTTT
GTGGAGTTCTTCCATGTAGAGGACCTAGAAGGCGGCATCAGAAATGTGCTGCTGGCTTTT
GCAGGTGTTGCTGGAGTAGGAGCTGGTTTGGCATATCTAATAAGATAGCCTTTTAAGTGC
AATAATTGACTCTTAACCAACTCCAGCCACAAAATCCTACGTCTGTGAAATCAAATGTAT
TTATGAAGTTGGACTTCAGACTGTCTAGGCCATAATCTCCAAGAGGTCTACTCTAGCAAC
AGAGAAAAGCAAGTGGCAAGAGGATTATGACTGAAATAAATACCTGGGAAAAGTAGTTTC
CTTTGAAGAGTCACTGTCTGAAAGAAGCAGAATTCAGTTTCAGCAAAGTCAAACTTTGGG
AGGCCTTGAAGAGTACTTTTTAGACTTAGGGTCGATAGTAGGGTAAAGAGACTTTAATTA
CCTTGTCTAGAACAGGAAAGAGGCCAGTAGCCAGGCTAGTCCTAGAGTTCATTAAATATG
CCCACGGACTTCATTAACTTTCTTTAGTGTCAGAAGAGAAGCACTAACAACACCACTGGT
GTGTGTAAAGTGGATTTAAGCTACAGGTAATAGAACTATGATCTGAAGCCCCAATACTGT
ACAACAGCATGTGAAGGGAAGCTTTTTCCTCTCTATAACTAGCTTTTCCCAAGTGTTCTT
CTTGAATAGAAAGTCCAAGTGCTCAGGACATTTATACCTGTTCTGCTTTGGCTTGTGGTT
TGAGGGATTCTTTATTAGCCTCGTTTTAAGACAAAAACTTGTAAATGTATTTGTCTGTAA
AAATTGTATATATTTTTACAGAAAACCTTTCTTTCTCCCTTTGGAGAAAAGTCTCAAATT
TACATTAGTTTTTTCATACCCTTTTGAAATCTTTAACCTCTGTAGTTAGGAACCTGTTTC
TTACAGCTTTTCTATTCTGAACTTTGTTCCTGGTCGGTTCTAGATTGTATACAGAACCAA
CTGTTGTAATTGTATGCACCCTGTTATAGTGGAACAATTCTGACTCATAACTATGCAGGC
TTTAATTTTCCTGATTTTGATAAGTATTTCTTAAGGTTTTTTGTTGTTTTTTTAAACCTG
GGACTGAAAAATTGAGAAATGAAAATTAATTCTTTCACTTTATTACGTAATAGGTTTGCA
ATAATTGAGTCAAGATGGGGTTTTAAGATTTTATTTTGGGGGGTGGGACACATGGGCTGA
TGACTTAAAAATAATGGGCTCTGATTGGGCAACTACTCATTTGAGTTCCTTCTGGTATGA
TTTAACTAGTGAAATATAAACTGAGTTCATGAGCTCATCTTCAAAGCTTCTACTAAAAGA
TTTTCAGCTGTTCCAGATGGGACTTATTAGCAGTATGTATAAAAAGATCACATCAGGTGG
ATGTGAGACATATAATCCCTTGTTTGCCTAATAAATTGTACAGTGATAGCTTGGAAAAGC
AGACTATAGTTTAACCATGGTGCTATTATTAGGCTTGCTTGTTAAACACAGGTCTAAGCC
TACTGTGTCAATAAAACAAATACTTCATTTCTGTTAATAATGTTCAGACTTTGTTTCAGA
CTTTTGCATTGGCATCCATAGAGATTTCAGACTTGATGTTTTTATCAAACGTACCATATA
TTTCCTGTTTTTCTTTGAAATATTTGCTGCTTGTTGTGCTCCCTCAACACATATTTATAT
CAGTTCCTATAAATTTGCCATCCCTGAACTCTTGCTAGCCCTTTTTAGTTTTTGGCACTA
GGAACCCAAGTGACCACCCAAGGAGTCCACAGACTTTCATCCTTCATGAATTTTATCCTC
AGGAGGAGGTAGTACAGTGAGCTCTAACCTAACAGTTAAGAGGTGAGAAGAGTCCCTTTT
CCTTGAACTGGTTTCTTTTTTGGTTGTTGCTCAATCCTGTCTTTGGGGAGATAAAAGTCC
CCTTAGGGATTTTTCAGAGGAAGAGACCTTTTATGTGACTCTAGGTTCTTTTGCATTTGA
ATATGTTCACTTAAAATTATAGAAATTAATGGGCTCTGTTAAACCTCAAACCTCAAAGAG
TTATTTAAACTGGTAAGCTGAAGAAAACTTGTGTAGTGGAACCATGGTCATTTGAAAGCT
TCAGCCTCAGAATGTGACCTTTAGTGTGTGGACTCCAGACAAAAATAGGCATGAATAATA
TGACTAAGAATGTAATAGGGAAGAATTGCCCGGCCTGCCCATCTCCGAGCCATAACATCA
TCCAGATAGAGTTATTTTTACCTGTGTATTTATCGTTCTTGACCATAAACCACTTATTTA
TATCATGTCTCTCTCTAAGGACCTAAAAGCACTTTATGTAGTTAATTAATCTTAAGATCG
AATTAAGGTGACTGAAAGGCCTGTCTCCCCATAGCCACTTGTGGAAATAAGCACAGAGAT
GCCAATTGGTGGAGTTTAGGGTCCCCACTTCCCAACTTACTGGGTGTGACTGCTGAAATG
CAGATGAGAATCTTAAGTTGATATTTGGGGCAGGTTGGGTGATTCTATAGGGAAAGGAGG
CACCTGTTTTAAGTGCTGACTAGCTGTGTAGTTAGGCAGCTCCTCCAAAATGGAAAGGGA
GGAGCTGCTTGGAAAGATGTCTCTCTCAGCAACTGTCTGTCTGATGCTTCTCTCAGGGAA
AAACCTGCAGTCCTCTAGTGTGTCTGTGGTCTGTGTACATTCTGTTGGGGGTGAACACCT
TGGTTCTGGTTAAAACAGCTAAAAAGCTGTTGACAGCTGTGCCAGGAAGGGTTAGGACCA
ACTACAAATTAATGTGGGCTGTAAAAAGTAGTGTGTTTCCCTAACTTTCTGTTTTTCCTG
AGAAGAAAATAATAAATCTTTTATTCAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|6525061|gb|AAF15310.1| |
Protein identifier
|
gi|6525061|gb|AAF15310.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-203, gnl|bosTau2|chr18 (54096737-54096533) |
|
1-203, gnl|Hg17|chr1 (147365150-147364954) |
| |
|
398-1401, gnl|bosTau2|chr10 (39316917-39317915) |
|
398-1401, gnl|Hg17|chr1 (147364756-147362651) |
|
398-1401, gnl|Mm7|chr3 (95533072-95535046) |
| |
|
1534-2560, gnl|bosTau2|chr10 (39318005-39319031) |
|
1534-2560, gnl|Hg17|chr1 (147362533-147361523) |
| |
|
2639-3513, gnl|bosTau2|chr3 (16949254-16950123) |
|
2639-3513, gnl|Hg17|chr1 (147361423-147360521) |
|
2639-3513, gnl|Mm7|chr3 (95535906-95536757) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-203, gnl|bosTau2|chr18 (54096737-54096533) |
|
1-203, gnl|Hg17|chr1 (147365150-147364954) |
| |
|
398-1401, gnl|bosTau2|chr10 (39316917-39317915) |
|
398-1401, gnl|Hg17|chr1 (147364756-147362651) |
|
398-1401, gnl|Mm7|chr3 (95533072-95535046) |
| |
|
1534-2560, gnl|bosTau2|chr10 (39318005-39319031) |
|
1534-2560, gnl|Hg17|chr1 (147362533-147361523) |
| |
|
2639-3513, gnl|bosTau2|chr3 (16949254-16950123) |
|
2639-3513, gnl|Hg17|chr1 (147361423-147360521) |
|
2639-3513, gnl|Mm7|chr3 (95535906-95536757) |
|
cbl (3.21433) |
|
liv (0.877706) |
|
sin (0.69979) |
|
sug (0.636456) |
|
cty (0.62448) |
|
ldo (0.582016) |
|
spl (0.572738) |
|
fce (0.543183) |
|
ste (0.540833) |
|
fbs (0.526039) |
|
ova (0.516529) |
|
fhi (0.508733) |
|
nbm (0.496623) |
|
jej (0.494609) |
|
nco (0.485201) |
|
clu (0.478583) |
|
kid (0.389206) |
|
nlu (0.383362) |
|
bla (0.373042) |
|
tra (0.369276) |
|
gul (0.355177) |
|
vin (0.332557) |
|
mga (0.32041) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
cag (0.302389) |
|
fat (0.294855) |
|
lin (0.291206) |
|
lnt (0.284616) |
|
pla (0.267344) |
|
med (0.232504) |
|
nms (0.213858) |
|
hea (0.204499) |
|
col (0.195008) |
|
sag (0.182715) |
|
ill (0.175593) |
|
rec (0.17307) |
|
eye (0.170503) |
|
cut (0.169924) |
|
nje (0.16592) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
eep (0.122564) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
cbl (3.21433) |
|
liv (0.877706) |
|
sin (0.69979) |
|
sug (0.636456) |
|
cty (0.62448) |
|
ldo (0.582016) |
|
spl (0.572738) |
|
fce (0.543183) |
|
ste (0.540833) |
|
fbs (0.526039) |
|
ova (0.516529) |
|
fhi (0.508733) |
|
nbm (0.496623) |
|
jej (0.494609) |
|
nco (0.485201) |
|
clu (0.478583) |
|
kid (0.389206) |
|
nlu (0.383362) |
|
bla (0.373042) |
|
tra (0.369276) |
|
gul (0.355177) |
|
vin (0.332557) |
|
mga (0.32041) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
cag (0.302389) |
|
fat (0.294855) |
|
lin (0.291206) |
|
lnt (0.284616) |
|
pla (0.267344) |
|
med (0.232504) |
|
nms (0.213858) |
|
hea (0.204499) |
|
col (0.195008) |
|
sag (0.182715) |
|
ill (0.175593) |
|
rec (0.17307) |
|
eye (0.170503) |
|
cut (0.169924) |
|
nje (0.16592) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
eep (0.122564) |
|
ecc (0.115035) |
|
spc (0.113366) |