Ss1.1-Pig4-TMW8032P07.3
               |  | TTCCGCTTCCTTCCCGTAAGGAGTCGGGCCTCCCCCATTTTTCTGCCAAGGTGGTGGCGG
CGGCGGCTTGCGATGTTTGGCCTCCAGAGAAACGCAGTAATCGGACTCAACCTCTACTGT
GGGGGGGCCGGATTGGGGCCTGGAAGCGGCAGCAGCGCCTCCGCTCCGGGAGGCCGTCTC
TTGGCTACGGGAAAAGAGGCCACGGCCCGGCAAGAGGTAGGGGGAGGGGAAGCCGGCATG
GTGATTGGCGGAAGCGCCGGCGCGAGCCCCCCGTCCACTCCTGCGCCAGACGCCCGGAGG
GTCGCGCGGCCCTCGCCCATTGGCGCCGAGGGCCCCGACGTCACCGCGACCCCCGCCAGA
CTGCTGTTCTTCGCGCCCACCCGCCTCGCGTCGCCGCCTGAAGAGATGGAATCCCCGGCC
TCCGACGCCATCATGTCTCCCGAAGAGGAGCTGGACGGGTACGAGCCGGAGCCCCTCGGG
AAGCGGCCGGCCGTCCTGCCCTTGCTGGGGTTAGTCGAGGAGGCCAGTAGTGGCCCCGGC
ACGGACGGCTCGCTCCCCTCGACGCCGCCCCCGGCAGAGGAGGAGGAGGACGAGTTATAC
CGGCAGTCCCTGGAGATTATCTCTCGGTACCTTCGGGAGCAGGCAACCGGCGCCAAGGAC
GCGAAGCCAATGGGCGGGTCTGGGGCCGCCAGCCGGAAGGCGTTAGAGACCCTGCGACGG
GTCGGGGACGGGGTGCAGCGCAACCACGAGACGGCCTTCCAAGGCATGCTTCGGAAACTG
GACATCAAAAACGAAGACGATGTCAAATCTTTGTCTCGAGTGATGGTCCACGTTTTCAGT
GACGGAGTAACAAACTGGGGCAGGATTGTGACTCTTATTTCTTTTGGTGCCTTTGTGGCC
AAACACTTGAAGAGTATAAATCAAGAAAGCTGCATCGAACCGTTAGCAGAAAGCATCACA
GATGTTCTCGTAAGGACAAAACGAGACTGGCTAGTCAAACAAAGAGGCTGGGATGGGTTT
GTGGAGTTCTTCCATGTAGAGGACCTAGAAGGCGGCATCAGAAATGTGCTGCTGGCTTTT
GCAGGTGTTGCTGGAGTAGGAGCTGGTTTGGCATATCTAATAAGATAGCCTTTTAAGTGC
AATAATTGACTCTTAACCAACTCCAGCCACAAAATCCTACGTCTGTGAAATCAAATGTAT
TTATGAAGTTGGACTTCAGACTGTCTAGGCCATAATCTCCAAGAGGTCTACTCTAGCAAC
AGAGAAAAGCAAGTGGCAAGAGGATTATGACTGAAATAAATACCTGGGAAAAGTAGTTTC
CTTTGAAGAGTCACTGTCTGAAAGAAGCAGAATTCAGTTTCAGCAAAGTCAAACTTTGGG
AGGCCTTGAAGAGTACTTTTTAGACTTAGGGTCGATAGTAGGGTAAAGAGACTTTAATTA
CCTTGTCTAGAACAGGAAAGAGGCCAGTAGCCAGGCTAGTCCTAGAGTTCATTAAATATG
CCCACGGACTTCATTAACTTTCTTTAGTGTCAGAAGAGAAGCACTAACAACACCACTGGT
GTGTGTAAAGTGGATTTAAGCTACAGGTAATAGAACTATGATCTGAAGCCCCAATACTGT
ACAACAGCATGTGAAGGGAAGCTTTTTCCTCTCTATAACTAGCTTTTCCCAAGTGTTCTT
CTTGAATAGAAAGTCCAAGTGCTCAGGACATTTATACCTGTTCTGCTTTGGCTTGTGGTT
TGAGGGATTCTTTATTAGCCTCGTTTTAAGACAAAAACTTGTAAATGTATTTGTCTGTAA
AAATTGTATATATTTTTACAGAAAACCTTTCTTTCTCCCTTTGGAGAAAAGTCTCAAATT
TACATTAGTTTTTTCATACCCTTTTGAAATCTTTAACCTCTGTAGTTAGGAACCTGTTTC
TTACAGCTTTTCTATTCTGAACTTTGTTCCTGGTCGGTTCTAGATTGTATACAGAACCAA
CTGTTGTAATTGTATGCACCCTGTTATAGTGGAACAATTCTGACTCATAACTATGCAGGC
TTTAATTTTCCTGATTTTGATAAGTATTTCTTAAGGTTTTTTGTTGTTTTTTTAAACCTG
GGACTGAAAAATTGAGAAATGAAAATTAATTCTTTCACTTTATTACGTAATAGGTTTGCA
ATAATTGAGTCAAGATGGGGTTTTAAGATTTTATTTTGGGGGGTGGGACACATGGGCTGA
TGACTTAAAAATAATGGGCTCTGATTGGGCAACTACTCATTTGAGTTCCTTCTGGTATGA
TTTAACTAGTGAAATATAAACTGAGTTCATGAGCTCATCTTCAAAGCTTCTACTAAAAGA
TTTTCAGCTGTTCCAGATGGGACTTATTAGCAGTATGTATAAAAAGATCACATCAGGTGG
ATGTGAGACATATAATCCCTTGTTTGCCTAATAAATTGTACAGTGATAGCTTGGAAAAGC
AGACTATAGTTTAACCATGGTGCTATTATTAGGCTTGCTTGTTAAACACAGGTCTAAGCC
TACTGTGTCAATAAAACAAATACTTCATTTCTGTTAATAATGTTCAGACTTTGTTTCAGA
CTTTTGCATTGGCATCCATAGAGATTTCAGACTTGATGTTTTTATCAAACGTACCATATA
TTTCCTGTTTTTCTTTGAAATATTTGCTGCTTGTTGTGCTCCCTCAACACATATTTATAT
CAGTTCCTATAAATTTGCCATCCCTGAACTCTTGCTAGCCCTTTTTAGTTTTTGGCACTA
GGAACCCAAGTGACCACCCAAGGAGTCCACAGACTTTCATCCTTCATGAATTTTATCCTC
AGGAGGAGGTAGTACAGTGAGCTCTAACCTAACAGTTAAGAGGTGAGAAGAGTCCCTTTT
CCTTGAACTGGTTTCTTTTTTGGTTGTTGCTCAATCCTGTCTTTGGGGAGATAAAAGTCC
CCTTAGGGATTTTTCAGAGGAAGAGACCTTTTATGTGACTCTAGGTTCTTTTGCATTTGA
ATATGTTCACTTAAAATTATAGAAATTAATGGGCTCTGTTAAACCTCAAACCTCAAAGAG
TTATTTAAACTGGTAAGCTGAAGAAAACTTGTGTAGTGGAACCATGGTCATTTGAAAGCT
TCAGCCTCAGAATGTGACCTTTAGTGTGTGGACTCCAGACAAAAATAGGCATGAATAATA
TGACTAAGAATGTAATAGGGAAGAATTGCCCGGCCTGCCCATCTCCGAGCCATAACATCA
TCCAGATAGAGTTATTTTTACCTGTGTATTTATCGTTCTTGACCATAAACCACTTATTTA
TATCATGTCTCTCTCTAAGGACCTAAAAGCACTTTATGTAGTTAATTAATCTTAAGATCG
AATTAAGGTGACTGAAAGGCCTGTCTCCCCATAGCCACTTGTGGAAATAAGCACAGAGAT
GCCAATTGGTGGAGTTTAGGGTCCCCACTTCCCAACTTACTGGGTGTGACTGCTGAAATG
CAGATGAGAATCTTAAGTTGATATTTGGGGCAGGTTGGGTGATTCTATAGGGAAAGGAGG
CACCTGTTTTAAGTGCTGACTAGCTGTGTAGTTAGGCAGCTCCTCCAAAATGGAAAGGGA
GGAGCTGCTTGGAAAGATGTCTCTCTCAGCAACTGTCTGTCTGATGCTTCTCTCAGGGAA
AAACCTGCAGTCCTCTAGTGTGTCTGTGGTCTGTGTACATTCTGTTGGGGGTGAACACCT
TGGTTCTGGTTAAAACAGCTAAAAAGCTGTTGACAGCTGTGCCAGGAAGGGTTAGGACCA
ACTACAAATTAATGTGGGCTGTAAAAAGTAGTGTGTTTCCCTAACTTTCTGTTTTTCCTG
AGAAGAAAATAATAAATCTTTTATTCAAAAAAAAAAAAAAAAAAAAAA | 
Blue-coloured subsequences are predicted RNA structures by RNAz
               |  | TTCCGCTTCCTTCCCGTAAGGAGTCGGGCCTCCCCCATTTTTCTGCCAAGGTGGTGGCGG
CGGCGGCTTGCGATGTTTGGCCTCCAGAGAAACGCAGTAATCGGACTCAACCTCTACTGT
GGGGGGGCCGGATTGGGGCCTGGAAGCGGCAGCAGCGCCTCCGCTCCGGGAGGCCGTCTC
TTGGCTACGGGAAAAGAGGCCACGGCCCGGCAAGAGGTAGGGGGAGGGGAAGCCGGCATG
GTGATTGGCGGAAGCGCCGGCGCGAGCCCCCCGTCCACTCCTGCGCCAGACGCCCGGAGG
GTCGCGCGGCCCTCGCCCATTGGCGCCGAGGGCCCCGACGTCACCGCGACCCCCGCCAGA
CTGCTGTTCTTCGCGCCCACCCGCCTCGCGTCGCCGCCTGAAGAGATGGAATCCCCGGCC
TCCGACGCCATCATGTCTCCCGAAGAGGAGCTGGACGGGTACGAGCCGGAGCCCCTCGGG
AAGCGGCCGGCCGTCCTGCCCTTGCTGGGGTTAGTCGAGGAGGCCAGTAGTGGCCCCGGC
ACGGACGGCTCGCTCCCCTCGACGCCGCCCCCGGCAGAGGAGGAGGAGGACGAGTTATAC
CGGCAGTCCCTGGAGATTATCTCTCGGTACCTTCGGGAGCAGGCAACCGGCGCCAAGGAC
GCGAAGCCAATGGGCGGGTCTGGGGCCGCCAGCCGGAAGGCGTTAGAGACCCTGCGACGG
GTCGGGGACGGGGTGCAGCGCAACCACGAGACGGCCTTCCAAGGCATGCTTCGGAAACTG
GACATCAAAAACGAAGACGATGTCAAATCTTTGTCTCGAGTGATGGTCCACGTTTTCAGT
GACGGAGTAACAAACTGGGGCAGGATTGTGACTCTTATTTCTTTTGGTGCCTTTGTGGCC
AAACACTTGAAGAGTATAAATCAAGAAAGCTGCATCGAACCGTTAGCAGAAAGCATCACA
GATGTTCTCGTAAGGACAAAACGAGACTGGCTAGTCAAACAAAGAGGCTGGGATGGGTTT
GTGGAGTTCTTCCATGTAGAGGACCTAGAAGGCGGCATCAGAAATGTGCTGCTGGCTTTT
GCAGGTGTTGCTGGAGTAGGAGCTGGTTTGGCATATCTAATAAGATAGCCTTTTAAGTGC
AATAATTGACTCTTAACCAACTCCAGCCACAAAATCCTACGTCTGTGAAATCAAATGTAT
TTATGAAGTTGGACTTCAGACTGTCTAGGCCATAATCTCCAAGAGGTCTACTCTAGCAAC
AGAGAAAAGCAAGTGGCAAGAGGATTATGACTGAAATAAATACCTGGGAAAAGTAGTTTC
CTTTGAAGAGTCACTGTCTGAAAGAAGCAGAATTCAGTTTCAGCAAAGTCAAACTTTGGG
AGGCCTTGAAGAGTACTTTTTAGACTTAGGGTCGATAGTAGGGTAAAGAGACTTTAATTA
CCTTGTCTAGAACAGGAAAGAGGCCAGTAGCCAGGCTAGTCCTAGAGTTCATTAAATATG
CCCACGGACTTCATTAACTTTCTTTAGTGTCAGAAGAGAAGCACTAACAACACCACTGGT
GTGTGTAAAGTGGATTTAAGCTACAGGTAATAGAACTATGATCTGAAGCCCCAATACTGT
ACAACAGCATGTGAAGGGAAGCTTTTTCCTCTCTATAACTAGCTTTTCCCAAGTGTTCTT
CTTGAATAGAAAGTCCAAGTGCTCAGGACATTTATACCTGTTCTGCTTTGGCTTGTGGTT
TGAGGGATTCTTTATTAGCCTCGTTTTAAGACAAAAACTTGTAAATGTATTTGTCTGTAA
AAATTGTATATATTTTTACAGAAAACCTTTCTTTCTCCCTTTGGAGAAAAGTCTCAAATT
TACATTAGTTTTTTCATACCCTTTTGAAATCTTTAACCTCTGTAGTTAGGAACCTGTTTC
TTACAGCTTTTCTATTCTGAACTTTGTTCCTGGTCGGTTCTAGATTGTATACAGAACCAA
CTGTTGTAATTGTATGCACCCTGTTATAGTGGAACAATTCTGACTCATAACTATGCAGGC
TTTAATTTTCCTGATTTTGATAAGTATTTCTTAAGGTTTTTTGTTGTTTTTTTAAACCTG
GGACTGAAAAATTGAGAAATGAAAATTAATTCTTTCACTTTATTACGTAATAGGTTTGCA
ATAATTGAGTCAAGATGGGGTTTTAAGATTTTATTTTGGGGGGTGGGACACATGGGCTGA
TGACTTAAAAATAATGGGCTCTGATTGGGCAACTACTCATTTGAGTTCCTTCTGGTATGA
TTTAACTAGTGAAATATAAACTGAGTTCATGAGCTCATCTTCAAAGCTTCTACTAAAAGA
TTTTCAGCTGTTCCAGATGGGACTTATTAGCAGTATGTATAAAAAGATCACATCAGGTGG
ATGTGAGACATATAATCCCTTGTTTGCCTAATAAATTGTACAGTGATAGCTTGGAAAAGC
AGACTATAGTTTAACCATGGTGCTATTATTAGGCTTGCTTGTTAAACACAGGTCTAAGCC
TACTGTGTCAATAAAACAAATACTTCATTTCTGTTAATAATGTTCAGACTTTGTTTCAGA
CTTTTGCATTGGCATCCATAGAGATTTCAGACTTGATGTTTTTATCAAACGTACCATATA
TTTCCTGTTTTTCTTTGAAATATTTGCTGCTTGTTGTGCTCCCTCAACACATATTTATAT
CAGTTCCTATAAATTTGCCATCCCTGAACTCTTGCTAGCCCTTTTTAGTTTTTGGCACTA
GGAACCCAAGTGACCACCCAAGGAGTCCACAGACTTTCATCCTTCATGAATTTTATCCTC
AGGAGGAGGTAGTACAGTGAGCTCTAACCTAACAGTTAAGAGGTGAGAAGAGTCCCTTTT
CCTTGAACTGGTTTCTTTTTTGGTTGTTGCTCAATCCTGTCTTTGGGGAGATAAAAGTCC
CCTTAGGGATTTTTCAGAGGAAGAGACCTTTTATGTGACTCTAGGTTCTTTTGCATTTGA
ATATGTTCACTTAAAATTATAGAAATTAATGGGCTCTGTTAAACCTCAAACCTCAAAGAG
TTATTTAAACTGGTAAGCTGAAGAAAACTTGTGTAGTGGAACCATGGTCATTTGAAAGCT
TCAGCCTCAGAATGTGACCTTTAGTGTGTGGACTCCAGACAAAAATAGGCATGAATAATA
TGACTAAGAATGTAATAGGGAAGAATTGCCCGGCCTGCCCATCTCCGAGCCATAACATCA
TCCAGATAGAGTTATTTTTACCTGTGTATTTATCGTTCTTGACCATAAACCACTTATTTA
TATCATGTCTCTCTCTAAGGACCTAAAAGCACTTTATGTAGTTAATTAATCTTAAGATCG
AATTAAGGTGACTGAAAGGCCTGTCTCCCCATAGCCACTTGTGGAAATAAGCACAGAGAT
GCCAATTGGTGGAGTTTAGGGTCCCCACTTCCCAACTTACTGGGTGTGACTGCTGAAATG
CAGATGAGAATCTTAAGTTGATATTTGGGGCAGGTTGGGTGATTCTATAGGGAAAGGAGG
CACCTGTTTTAAGTGCTGACTAGCTGTGTAGTTAGGCAGCTCCTCCAAAATGGAAAGGGA
GGAGCTGCTTGGAAAGATGTCTCTCTCAGCAACTGTCTGTCTGATGCTTCTCTCAGGGAA
AAACCTGCAGTCCTCTAGTGTGTCTGTGGTCTGTGTACATTCTGTTGGGGGTGAACACCT
TGGTTCTGGTTAAAACAGCTAAAAAGCTGTTGACAGCTGTGCCAGGAAGGGTTAGGACCA
ACTACAAATTAATGTGGGCTGTAAAAAGTAGTGTGTTTCCCTAACTTTCTGTTTTTCCTG
AGAAGAAAATAATAAATCTTTTATTCAAAAAAAAAAAAAAAAAAAAAA | 
               |  | gi|6525061|gb|AAF15310.1| | 
Protein identifier
               |  | gi|6525061|gb|AAF15310.1| | 
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
               |  | 1-203, gnl|bosTau2|chr18 (54096737-54096533) | 
               |  | 1-203, gnl|Hg17|chr1 (147365150-147364954) | 
| 
 |  | 
               |  | 398-1401, gnl|bosTau2|chr10 (39316917-39317915) | 
               |  | 398-1401, gnl|Hg17|chr1 (147364756-147362651) | 
               |  | 398-1401, gnl|Mm7|chr3 (95533072-95535046) | 
| 
 |  | 
               |  | 1534-2560, gnl|bosTau2|chr10 (39318005-39319031) | 
               |  | 1534-2560, gnl|Hg17|chr1 (147362533-147361523) | 
| 
 |  | 
               |  | 2639-3513, gnl|bosTau2|chr3 (16949254-16950123) | 
               |  | 2639-3513, gnl|Hg17|chr1 (147361423-147360521) | 
               |  | 2639-3513, gnl|Mm7|chr3 (95535906-95536757) | 
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
               |  | 1-203, gnl|bosTau2|chr18 (54096737-54096533) | 
               |  | 1-203, gnl|Hg17|chr1 (147365150-147364954) | 
| 
 |  | 
               |  | 398-1401, gnl|bosTau2|chr10 (39316917-39317915) | 
               |  | 398-1401, gnl|Hg17|chr1 (147364756-147362651) | 
               |  | 398-1401, gnl|Mm7|chr3 (95533072-95535046) | 
| 
 |  | 
               |  | 1534-2560, gnl|bosTau2|chr10 (39318005-39319031) | 
               |  | 1534-2560, gnl|Hg17|chr1 (147362533-147361523) | 
| 
 |  | 
               |  | 2639-3513, gnl|bosTau2|chr3 (16949254-16950123) | 
               |  | 2639-3513, gnl|Hg17|chr1 (147361423-147360521) | 
               |  | 2639-3513, gnl|Mm7|chr3 (95535906-95536757) | 
               |  | cbl (3.21433) | 
               |  | liv (0.877706) | 
               |  | sin (0.69979) | 
               |  | sug (0.636456) | 
               |  | cty (0.62448) | 
               |  | ldo (0.582016) | 
               |  | spl (0.572738) | 
               |  | fce (0.543183) | 
               |  | ste (0.540833) | 
               |  | fbs (0.526039) | 
               |  | ova (0.516529) | 
               |  | fhi (0.508733) | 
               |  | nbm (0.496623) | 
               |  | jej (0.494609) | 
               |  | nco (0.485201) | 
               |  | clu (0.478583) | 
               |  | kid (0.389206) | 
               |  | nlu (0.383362) | 
               |  | bla (0.373042) | 
               |  | tra (0.369276) | 
               |  | gul (0.355177) | 
               |  | vin (0.332557) | 
               |  | mga (0.32041) | 
               |  | tbr (0.308356) | 
               |  | sme (0.305437) | 
               |  | cag (0.302389) | 
               |  | fat (0.294855) | 
               |  | lin (0.291206) | 
               |  | lnt (0.284616) | 
               |  | pla (0.267344) | 
               |  | med (0.232504) | 
               |  | nms (0.213858) | 
               |  | hea (0.204499) | 
               |  | col (0.195008) | 
               |  | sag (0.182715) | 
               |  | ill (0.175593) | 
               |  | rec (0.17307) | 
               |  | eye (0.170503) | 
               |  | cut (0.169924) | 
               |  | nje (0.16592) | 
               |  | isp (0.150376) | 
               |  | bfe (0.149858) | 
               |  | hyp (0.142837) | 
               |  | csk (0.140746) | 
               |  | nmm (0.132802) | 
               |  | ese (0.126502) | 
               |  | eep (0.122564) | 
               |  | ecc (0.115035) | 
               |  | spc (0.113366) | 
               |  | cbl (3.21433) | 
               |  | liv (0.877706) | 
               |  | sin (0.69979) | 
               |  | sug (0.636456) | 
               |  | cty (0.62448) | 
               |  | ldo (0.582016) | 
               |  | spl (0.572738) | 
               |  | fce (0.543183) | 
               |  | ste (0.540833) | 
               |  | fbs (0.526039) | 
               |  | ova (0.516529) | 
               |  | fhi (0.508733) | 
               |  | nbm (0.496623) | 
               |  | jej (0.494609) | 
               |  | nco (0.485201) | 
               |  | clu (0.478583) | 
               |  | kid (0.389206) | 
               |  | nlu (0.383362) | 
               |  | bla (0.373042) | 
               |  | tra (0.369276) | 
               |  | gul (0.355177) | 
               |  | vin (0.332557) | 
               |  | mga (0.32041) | 
               |  | tbr (0.308356) | 
               |  | sme (0.305437) | 
               |  | cag (0.302389) | 
               |  | fat (0.294855) | 
               |  | lin (0.291206) | 
               |  | lnt (0.284616) | 
               |  | pla (0.267344) | 
               |  | med (0.232504) | 
               |  | nms (0.213858) | 
               |  | hea (0.204499) | 
               |  | col (0.195008) | 
               |  | sag (0.182715) | 
               |  | ill (0.175593) | 
               |  | rec (0.17307) | 
               |  | eye (0.170503) | 
               |  | cut (0.169924) | 
               |  | nje (0.16592) | 
               |  | isp (0.150376) | 
               |  | bfe (0.149858) | 
               |  | hyp (0.142837) | 
               |  | csk (0.140746) | 
               |  | nmm (0.132802) | 
               |  | ese (0.126502) | 
               |  | eep (0.122564) | 
               |  | ecc (0.115035) | 
               |  | spc (0.113366) |