Non-Coding RNA Search

Ss1.1-Pig4-TMW8032P08.3

Sequence:


               
               CAATGTTTTTCTCAAAAAGCTGTTATCCAATGATGCAGGAAAATACGCAGTTTGTGTTTT
CCTAAACAAACTCTGGTTTTCTTTTTAAATGTGCTTTATTGTTTGATTTGGTCCTGCCCA
AATTCAATGAGCTAGGCCAATAAAGGCTGAACCAAGGATATTCTACTCTTTGGTATCATG
TGTAGATATCATGTATAGAAAATAAAGTAAAATATGGCTCTAACTTCTGTGTTGCTGTTT
ATCTTGTTATTTTTTGGCGTTAATCTAATGTGTTTATTAAGAGCATTTTATCCTCCAGAT
TCCTCATGGCTAACATTTGGTCTGTATTTTGCTCATTAGATGTGAATATTTCTTACTAGT
CTGCTTTCTGCTATGCAATGACTGCATTTCTATCATTTCTTAGTTTGTTAGTATATGTGG
ACAGTATTCTACTGTATAAATTGATTGCACAACTTATCAAAGACAATTTATTCTATGTAG
CTTTTCTACAGTGCTTTGCTAAACCATGTATACTAGTTAAGTCTTCCTTGAAAATAAAGA
TACACTCTTATAGAGGAAAGTTCCTGTTAACTCCCAGGAAAATTTTCTAAAAGATGACAC
TGAATGTTTATTGCACCTTAGTGCAGTGAAGTGGCAATAAAACCTAACATGAATTGAGGT
TGTTTATGGCAGATGCATGTTTTGCTTTACAGAGTTTAGCAAAAGCTCTTAATTTTATGT
CCTACTGTATTCTATTATAATAATAAAGCTCATATTATTCAATAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATGTTTTTCTCAAAAAGCTGTTATCCAATGATGCAGGAAAATACGCAGTTTGTGTTTT
CCTAAACAAACTCTGGTTTTCTTTTTAAATGTGCTTTATTGTTTGATTTGGTCCTGCCCA
AATTCAATGAGCTAGGCCAATAAAGGCTGAACCAAGGATATTCTACTCTTTGGTATCATG
TGTAGATATCATGTATAGAAAATAAAGTAAAATATGGCTCTAACTTCTGTGTTGCTGTTT
ATCTTGTTATTTTTTGGCGTTAATCTAATGTGTTTATTAAGAGCATTTTATCCTCCAGAT
TCCTCATGGCTAACATTTGGTCTGTATTTTGCTCATTAGATGTGAATATTTCTTACTAGT
CTGCTTTCTGCTATGCAATGACTGCATTTCTATCATTTCTTAGTTTGTTAGTATATGTGG
ACAGTATTCTACTGTATAAATTGATTGCACAACTTATCAAAGACAATTTATTCTATGTAG
CTTTTCTACAGTGCTTTGCTAAACCATGTATACTAGTTAAGTCTTCCTTGAAAATAAAGA
TACACTCTTATAGAGGAAAGTTCCTGTTAACTCCCAGGAAAATTTTCTAAAAGATGACAC
TGAATGTTTATTGCACCTTAGTGCAGTGAAGTGGCAATAAAACCTAACATGAATTGAGGT
TGTTTATGGCAGATGCATGTTTTGCTTTACAGAGTTTAGCAAAAGCTCTTAATTTTATGT
CCTACTGTATTCTATTATAATAATAAAGCTCATATTATTCAATAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-489, gnl|bosTau2|chr7 (64585018-64584524)
               

               
               1-489, gnl|Hg17|chr5 (161258779-161259257)
               

               
               1-489, gnl|Mm7|chr11 (42088460-42087974)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-489, gnl|bosTau2|chr7 (64585018-64584524)
               

               
               1-489, gnl|Hg17|chr5 (161258779-161259257)
               

               
               1-489, gnl|Mm7|chr11 (42088460-42087974)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fco (0.78604)
               

               
               cbe (0.478469)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.78604)
               

               
               cbe (0.478469)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)

	1-489, gnl\|bosTau2\|chr7 (64585018-64584524)
	1-489, gnl\|Hg17\|chr5 (161258779-161259257)
	1-489, gnl\|Mm7\|chr11 (42088460-42087974)

	fco (0.78604)
	cbe (0.478469)
	fhi (0.169578)
	hyp (0.142837)
	ret (0.128733)