Non-Coding RNA Search

Ss1.1-Pig4-TMW8032P19.3

Sequence:


               
               GCGGCGGACTACCCCGGCCCGTGTCCCAGATCTGATAACGCGCCCCGCGCCCCCTTCTCA
GCCCCCGGCGCGTGCACGCCGGGGCCCTGCGGGGCTGGCCACTTAGGGAGCGGGCGGCCG
GACCCCGACCGGCGCAGCGACCCGGAGCTCTCCCAGCCCAGGCGCACACGGAAGTGCTCA
GCTCTGAACAGGCTTTGAAAAGTAGAGAAGAAAATCCAGTCTGCTTTTTGGGGGACATTG
AGCAGCCGAATAAATGCAGTATCTAAATATAAAAGAGGACTGCAATGCCATGGCTTTTTG
TGCTAAAATGAGGAGCTCCAAGAAGACCGAGGTGAATCTGGAGGCCCCTGAGCCGGGGGT
GGAAGTGCTCTTCTATCTGTCGGATAGGGAGCCCCTCCGGCTGGGCGGCGGGGAGTACAC
GGCCGAGGAGGTGTGCATCAAGGCGGCGCAGGAATGCTGTATCTCTCCTCTGTGTCACAA
CCTCTTTGCCCTGTATGATGAGAGCACCAAGCTCTGGTACGCTCCGAATCGCACCATCAC
CGTCGATGACAAGACGTCAGTTCGGCTCCACTACCGGATGAGGTTCTATTTCACCAACTG
GCATGGGACCAATGATAATGAGCAGTCGGTATGGCGACATTCTCCAAAGAAACAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCGGACTACCCCGGCCCGTGTCCCAGATCTGATAACGCGCCCCGCGCCCCCTTCTCA
GCCCCCGGCGCGTGCACGCCGGGGCCCTGCGGGGCTGGCCACTTAGGGAGCGGGCGGCCG
GACCCCGACCGGCGCAGCGACCCGGAGCTCTCCCAGCCCAGGCGCACACGGAAGTGCTCA
GCTCTGAACAGGCTTTGAAAAGTAGAGAAGAAAATCCAGTCTGCTTTTTGGGGGACATTG
AGCAGCCGAATAAATGCAGTATCTAAATATAAAAGAGGACTGCAATGCCATGGCTTTTTG
TGCTAAAATGAGGAGCTCCAAGAAGACCGAGGTGAATCTGGAGGCCCCTGAGCCGGGGGT
GGAAGTGCTCTTCTATCTGTCGGATAGGGAGCCCCTCCGGCTGGGCGGCGGGGAGTACAC
GGCCGAGGAGGTGTGCATCAAGGCGGCGCAGGAATGCTGTATCTCTCCTCTGTGTCACAA
CCTCTTTGCCCTGTATGATGAGAGCACCAAGCTCTGGTACGCTCCGAATCGCACCATCAC
CGTCGATGACAAGACGTCAGTTCGGCTCCACTACCGGATGAGGTTCTATTTCACCAACTG
GCATGGGACCAATGATAATGAGCAGTCGGTATGGCGACATTCTCCAAAGAAACAGAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|24415844|gb|AAN59910.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|24415844|gb|AAN59910.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               257-460, + strand, RNAz p=0.996568
               

               
               296-460, + strand, RNAz p=0.894738

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-460, + strand, RNAz p=0.996568
               

               
               296-460, + strand, RNAz p=0.894738

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_002227, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002227, +

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               10-130, gnl|bosTau2|chr7 (14460152-14460272)
               


               
               257-460, gnl|bosTau2|chr3 (54709380-54709583)
               

               
               257-460, gnl|canFam2|chr5 (48366228-48366058)
               

               
               257-460, gnl|danRer3|chr6 (15198616-15198446)
               

               
               257-460, gnl|echTel1|scaffold_324241 (84460-84630)
               

               
               257-460, gnl|galGal2|chr8 (28447353-28447519)
               

               
               257-460, gnl|hg17|chr1 (65060971-65061141)
               

               
               257-460, gnl|Hg17|chr1 (65061182-65060979)
               

               
               257-460, gnl|loxAfr1|scaffold_63558 (2400-2230)
               

               
               257-460, gnl|mm7|chr4 (100567904-100568074)
               

               
               257-460, gnl|Mm7|chr4 (100568115-100567912)
               

               
               257-460, gnl|panTro1|chr1 (63400944-63401114)
               

               
               257-460, gnl|rheMac2|chr1 (67654393-67654563)
               

               
               257-460, gnl|rn3|chr5 (121850788-121850957)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-130, gnl|bosTau2|chr7 (14460152-14460272)
               


               
               257-460, gnl|bosTau2|chr3 (54709380-54709583)
               

               
               257-460, gnl|canFam2|chr5 (48366228-48366058)
               

               
               257-460, gnl|danRer3|chr6 (15198616-15198446)
               

               
               257-460, gnl|echTel1|scaffold_324241 (84460-84630)
               

               
               257-460, gnl|galGal2|chr8 (28447353-28447519)
               

               
               257-460, gnl|hg17|chr1 (65060971-65061141)
               

               
               257-460, gnl|Hg17|chr1 (65061182-65060979)
               

               
               257-460, gnl|loxAfr1|scaffold_63558 (2400-2230)
               

               
               257-460, gnl|mm7|chr4 (100567904-100568074)
               

               
               257-460, gnl|Mm7|chr4 (100568115-100567912)
               

               
               257-460, gnl|panTro1|chr1 (63400944-63401114)
               

               
               257-460, gnl|rheMac2|chr1 (67654393-67654563)
               

               
               257-460, gnl|rn3|chr5 (121850788-121850957)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               csp (0.161186)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	257-460, + strand, RNAz p=0.996568
	296-460, + strand, RNAz p=0.894738

	10-130, gnl\|bosTau2\|chr7 (14460152-14460272)

	257-460, gnl\|bosTau2\|chr3 (54709380-54709583)
	257-460, gnl\|canFam2\|chr5 (48366228-48366058)
	257-460, gnl\|danRer3\|chr6 (15198616-15198446)
	257-460, gnl\|echTel1\|scaffold_324241 (84460-84630)
	257-460, gnl\|galGal2\|chr8 (28447353-28447519)
	257-460, gnl\|hg17\|chr1 (65060971-65061141)
	257-460, gnl\|Hg17\|chr1 (65061182-65060979)
	257-460, gnl\|loxAfr1\|scaffold_63558 (2400-2230)
	257-460, gnl\|mm7\|chr4 (100567904-100568074)
	257-460, gnl\|Mm7\|chr4 (100568115-100567912)
	257-460, gnl\|panTro1\|chr1 (63400944-63401114)
	257-460, gnl\|rheMac2\|chr1 (67654393-67654563)
	257-460, gnl\|rn3\|chr5 (121850788-121850957)