Ss1.1-Pig4-TMW8032P20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACAACCCCCTGGACTGGAAAGAGCAGTATATTCACGAGAACTACAGCCGGGCCCTTGAA GGAGAGGGACTCGTGGAACAGCCCTGCCCAGATGTGTACTGGTTCCCTCTGCTGTCGGAG CAAATGTGTGATGAGCTGGTGGAAGAAATGGAGCATTACGGCCAGTGGTCAGGAGGCCGG CATGAGGATTCAAGGCTGGCTGGAGGCTACGAGAATGTGCCCACCGTAGACATCCACATG AAGCAGGTGGGCTATGAGGACCAGTGGCTGCAGCTGCTGAGGACATATGTGGGGCCCATG ACCGAGAGCCTGTTCCCAGGCTACCACACCAAGACCCGGGCGGTCATGAACTTCGTGGTC CGCTACCGGCCGGATGAGCAGCCCTCTCTGCGGCCCCATCACGACTCATCCACCTTCACC CTCAACGTTGCCCTCAACCACAAGGGCCTGGATTATGAGGGAGGCGGCTGCCGTTTCTTG CGCTACGACTGTGTGATCTCGTCCCCACGGAAGGGCTGGGGGCTCCTGCACCCTGGCCGT CTCACCCACTACCATGAGGGGCTGCCCACCACACGGGGCACTCGCTATATCATGGTGTCC TTTGTCGACCCCTGACACTCAACCACTCTGCCCAACCTTCCCTGCCATTGTGCCTTCTCG CGCTCCCTCCTTGGAGGGGGTGTGCCCTGCCTCTCGGGCGCATGTTCCGTGTGTCTGGGA CTGAATGTGTTGCCCCGCCCCCACCACACGGCCCTCGGCCCTCGGGAAGCTCAGGAAGCC CCCTTGCCCTGCTCCTCAGCCCCCAAGCATTCCCAGGGAGAGGGCTTCTAGGGGTTCGCC ATGTAATAAGTTATTGTTTCTCAGTCTCCCTCAATAAAGGAGGATTTGTAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACAACCCCCTGGACTGGAAAGAGCAGTATATTCACGAGAACTACAGCCGGGCCCTTGAA GGAGAGGGACTCGTGGAACAGCCCTGCCCAGATGTGTACTGGTTCCCTCTGCTGTCGGAG CAAATGTGTGATGAGCTGGTGGAAGAAATGGAGCATTACGGCCAGTGGTCAGGAGGCCGG CATGAGGATTCAAGGCTGGCTGGAGGCTACGAGAATGTGCCCACCGTAGACATCCACATG AAGCAGGTGGGCTATGAGGACCAGTGGCTGCAGCTGCTGAGGACATATGTGGGGCCCATG ACCGAGAGCCTGTTCCCAGGCTACCACACCAAGACCCGGGCGGTCATGAACTTCGTGGTC CGCTACCGGCCGGATGAGCAGCCCTCTCTGCGGCCCCATCACGACTCATCCACCTTCACC CTCAACGTTGCCCTCAACCACAAGGGCCTGGATTATGAGGGAGGCGGCTGCCGTTTCTTG CGCTACGACTGTGTGATCTCGTCCCCACGGAAGGGCTGGGGGCTCCTGCACCCTGGCCGT CTCACCCACTACCATGAGGGGCTGCCCACCACACGGGGCACTCGCTATATCATGGTGTCC TTTGTCGACCCCTGACACTCAACCACTCTGCCCAACCTTCCCTGCCATTGTGCCTTCTCG CGCTCCCTCCTTGGAGGGGGTGTGCCCTGCCTCTCGGGCGCATGTTCCGTGTGTCTGGGA CTGAATGTGTTGCCCCGCCCCCACCACACGGCCCTCGGCCCTCGGGAAGCTCAGGAAGCC CCCTTGCCCTGCTCCTCAGCCCCCAAGCATTCCCAGGGAGAGGGCTTCTAGGGGTTCGCC ATGTAATAAGTTATTGTTTCTCAGTCTCCCTCAATAAAGGAGGATTTGTAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 185-333, gnl|bosTau2|chr25 (30479560-30479412) | |
| 185-333, gnl|Hg17|chr7 (100444442-100444294) | |
| 185-333, gnl|Mm7|chr5 (135965051-135965199) | |
| 458-616, gnl|bosTau2|chr16 (21360564-21360406) | |
| 458-616, gnl|canFam2|chr2 (87202738-87202567) | |
| 458-616, gnl|danRer3|chr14 (44615762-44615589) | |
| 458-616, gnl|dasNov1|scaffold_98633 (1733-1562) | |
| 458-616, gnl|echTel1|scaffold_295150 (50860-50689) | |
| 458-616, gnl|fr1|chrUn (245274655-245274818) | |
| 458-616, gnl|galGal2|chr21 (5247584-5247414) | |
| 458-616, gnl|hg17|chr1 (11968961-11969132) | |
| 458-616, gnl|Hg17|chr1 (11968974-11969132) | |
| 458-616, gnl|loxAfr1|scaffold_39966 (30330-30139) | |
| 458-616, gnl|mm7|chr4 (146900433-146900262) | |
| 458-616, gnl|Mm7|chr4 (146900418-146900260) | |
| 458-616, gnl|monDom2|scaffold_175 (103909-103738) | |
| 458-616, gnl|oryCun1|scaffold_195503 (18610-18439) | |
| 458-616, gnl|panTro1|chr1 (12174762-12174933) | |
| 458-616, gnl|rheMac2|chr1 (15085612-15085783) | |
| 458-616, gnl|rn3|chr5 (164998267-164998096) | |
| 458-616, gnl|tetNig1|chr6 (3601800-3601973) | |
| 458-616, gnl|xenTro1|scaffold_348 (833008-832840) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 185-333, gnl|bosTau2|chr25 (30479560-30479412) | |
| 185-333, gnl|Hg17|chr7 (100444442-100444294) | |
| 185-333, gnl|Mm7|chr5 (135965051-135965199) | |
| 458-616, gnl|bosTau2|chr16 (21360564-21360406) | |
| 458-616, gnl|canFam2|chr2 (87202738-87202567) | |
| 458-616, gnl|danRer3|chr14 (44615762-44615589) | |
| 458-616, gnl|dasNov1|scaffold_98633 (1733-1562) | |
| 458-616, gnl|echTel1|scaffold_295150 (50860-50689) | |
| 458-616, gnl|fr1|chrUn (245274655-245274818) | |
| 458-616, gnl|galGal2|chr21 (5247584-5247414) | |
| 458-616, gnl|hg17|chr1 (11968961-11969132) | |
| 458-616, gnl|Hg17|chr1 (11968974-11969132) | |
| 458-616, gnl|loxAfr1|scaffold_39966 (30330-30139) | |
| 458-616, gnl|mm7|chr4 (146900433-146900262) | |
| 458-616, gnl|Mm7|chr4 (146900418-146900260) | |
| 458-616, gnl|monDom2|scaffold_175 (103909-103738) | |
| 458-616, gnl|oryCun1|scaffold_195503 (18610-18439) | |
| 458-616, gnl|panTro1|chr1 (12174762-12174933) | |
| 458-616, gnl|rheMac2|chr1 (15085612-15085783) | |
| 458-616, gnl|rn3|chr5 (164998267-164998096) | |
| 458-616, gnl|tetNig1|chr6 (3601800-3601973) | |
| 458-616, gnl|xenTro1|scaffold_348 (833008-832840) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cga (0.279096) | |
| csp (0.161186) | |
| cli (0.152812) | |
| nca (0.136874) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| csp (0.161186) | |
| cli (0.152812) | |
| nca (0.136874) | |
| cty (0.10408) |