Ss1.1-Pig4-TMW8032P21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACATGGCTCCGCGTCTGTGCAGCATCTCTGCGGCGGCGCGGCGGCTACTGGGGGGCCCA GGGCTTGGTGCCCGGGACACTGCGGCTGTGGCTGCGGCGCGGTTCTATTCCAAGGACAAT GAAGGCAGCTGGTTCCGTTCCCTCTTCGTACACAAGGTGGATCCTCGGAAGGATGCCCAC TCTACCCTGCTGTCTAAGAAGGAGACCAGCAACCTCTACAAGATCCAGTTTCACAATGTG AAGCCCGAGTGTCTGGATGCCTACAACAGCCTGACGGAGGCCGTGCTGCCCAAGCTGCAC CTGGATGAGGACTACCCCTGCTCGCTTGTGGGCAACTGGAACACGTGGTACGGGGAGCAG GACCAGGCTGTACACCTGTGGCGATTCTCAGGTGGCTACCCAGCCCTCATGGACTGCATG AACAAGCTCAAAAACAACAAGGAGTACCTGGAGTTCCGAAAGGAGCGGAGCCAGATGCTG CTTTCCAGGAGGAACCAGATGCTTCTCGAGTTCAGCTTCTGGAATGAGCCACAGCCTCGA GCTGGCCCCAACATCTACGAGCTGAGGACGTACAAGCTCAAGCCAGGAACCATGATCGAG TGGGGGAACAACTGGGCTCGGGCCATCAAGTACCGGCAGGAGAACCAGGAAGCAGTGGGC GGCTTCTTCTCGCAGATAGGAGAGCTCTACGTTGTGCACCATCTCTGGGCCTATAAGGAC CTGCAGTCTCGGGAGGAGACCCGAAACGCTGCCTGGAGGAAGAGGGGCTGGGATGAAAAT GTCTACTACACAGTCCCCCTGGTGCGACACATGGAGTCTCGGATCATGATCCCTTTGAAG ATCTCGCCTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACATGGCTCCGCGTCTGTGCAGCATCTCTGCGGCGGCGCGGCGGCTACTGGGGGGCCCA GGGCTTGGTGCCCGGGACACTGCGGCTGTGGCTGCGGCGCGGTTCTATTCCAAGGACAAT GAAGGCAGCTGGTTCCGTTCCCTCTTCGTACACAAGGTGGATCCTCGGAAGGATGCCCAC TCTACCCTGCTGTCTAAGAAGGAGACCAGCAACCTCTACAAGATCCAGTTTCACAATGTG AAGCCCGAGTGTCTGGATGCCTACAACAGCCTGACGGAGGCCGTGCTGCCCAAGCTGCAC CTGGATGAGGACTACCCCTGCTCGCTTGTGGGCAACTGGAACACGTGGTACGGGGAGCAG GACCAGGCTGTACACCTGTGGCGATTCTCAGGTGGCTACCCAGCCCTCATGGACTGCATG AACAAGCTCAAAAACAACAAGGAGTACCTGGAGTTCCGAAAGGAGCGGAGCCAGATGCTG CTTTCCAGGAGGAACCAGATGCTTCTCGAGTTCAGCTTCTGGAATGAGCCACAGCCTCGA GCTGGCCCCAACATCTACGAGCTGAGGACGTACAAGCTCAAGCCAGGAACCATGATCGAG TGGGGGAACAACTGGGCTCGGGCCATCAAGTACCGGCAGGAGAACCAGGAAGCAGTGGGC GGCTTCTTCTCGCAGATAGGAGAGCTCTACGTTGTGCACCATCTCTGGGCCTATAAGGAC CTGCAGTCTCGGGAGGAGACCCGAAACGCTGCCTGGAGGAAGAGGGGCTGGGATGAAAAT GTCTACTACACAGTCCCCCTGGTGCGACACATGGAGTCTCGGATCATGATCCCTTTGAAG ATCTCGCCTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 103-229, - strand, RNAz p=0.980374 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 103-229, - strand, RNAz p=0.980374 |
| Aligned organism(s): 97 entry(ies) | More info |
| Aligned organism(s): 97 entry(ies) | Help | Less info |
| 103-229, gnl|bosTau2|chr17 (39497625-39497499) | |
| 103-229, gnl|canFam2|chr26 (25823911-25824071) | |
| 103-229, gnl|canFam2|chrX (66045197-66045343) | |
| 103-229, gnl|danRer3|chrNA (120626159-120626028) | |
| 103-229, gnl|danRer3|chrNA (120625999-120626151) | |
| 103-229, gnl|dasNov1|scaffold_57875 (83671-83511) | |
| 103-229, gnl|dasNov1|scaffold_57875 (83521-83668) | |
| 103-229, gnl|echTel1|scaffold_36075 (3110-3270) | |
| 103-229, gnl|echTel1|scaffold_36075 (3260-3122) | |
| 103-229, gnl|fr1|chrUn (313473037-313472907) | |
| 103-229, gnl|fr1|chrUn (313472907-313473027) | |
| 103-229, gnl|galGal2|chr15 (10972953-10972786) | |
| 103-229, gnl|hg17|chr17 (5574356-5574508) | |
| 103-229, gnl|hg17|chr22 (28290937-28291097) | |
| 103-229, gnl|Hg17|chr22 (28291074-28290948) | |
| 103-229, gnl|loxAfr1|scaffold_88972 (10097-9937) | |
| 103-229, gnl|loxAfr1|scaffold_88972 (9947-10085) | |
| 103-229, gnl|mm7|chr11 (4835511-4835351) | |
| 103-229, gnl|mm7|chr11 (4835361-4835508) | |
| 103-229, gnl|Mm7|chr11 (4835372-4835498) | |
| 103-229, gnl|monDom2|scaffold_30 (15942971-15942822) | |
| 103-229, gnl|monDom2|scaffold_89 (3326590-3326750) | |
| 103-229, gnl|oryCun1|scaffold_97661 (2241-2401) | |
| 103-229, gnl|oryCun1|scaffold_97661 (2391-2253) | |
| 103-229, gnl|panTro1|chr23 (28383599-28383759) | |
| 103-229, gnl|panTro1|chr23 (28383749-28383611) | |
| 103-229, gnl|rheMac2|chr16 (5444282-5444167) | |
| 103-229, gnl|rheMac2|chr16 (5444157-5444299) | |
| 103-229, gnl|rn3|chr14 (85565461-85565301) | |
| 103-229, gnl|rn3|chr14 (85565311-85565458) | |
| 103-229, gnl|tetNig1|chr10 (10556918-10556787) | |
| 103-229, gnl|tetNig1|chr7 (7714521-7714630) | |
| 103-229, gnl|xenTro1|scaffold_207 (498825-498988) | |
| 258-368, gnl|bosTau2|chr17 (39497089-39496979) | |
| 258-368, gnl|canFam2|chr26 (25823321-25823434) | |
| 258-368, gnl|canFam2|chrX (66045375-66045466) | |
| 258-368, gnl|danRer3|chrNA (120632341-120632252) | |
| 258-368, gnl|danRer3|chrNA (120633839-120633928) | |
| 258-368, gnl|dasNov1|scaffold_57875 (84225-84112) | |
| 258-368, gnl|dasNov1|scaffold_57875 (84116-84206) | |
| 258-368, gnl|echTel1|scaffold_36075 (2634-2737) | |
| 258-368, gnl|echTel1|scaffold_36075 (2737-2646) | |
| 258-368, gnl|fr1|chrUn (313473613-313473512) | |
| 258-368, gnl|fr1|chrUn (313473531-313473605) | |
| 258-368, gnl|galGal2|chr15 (10973469-10973356) | |
| 258-368, gnl|hg17|chr17 (5574542-5574632) | |
| 258-368, gnl|hg17|chr22 (28289721-28289834) | |
| 258-368, gnl|Hg17|chr22 (28289844-28289738) | |
| 258-368, gnl|mm7|chr11 (4836136-4836023) | |
| 258-368, gnl|mm7|chr11 (4836026-4836117) | |
| 258-368, gnl|Mm7|chr11 (4836011-4836117) | |
| 258-368, gnl|monDom2|scaffold_30 (15942799-15942706) | |
| 258-368, gnl|monDom2|scaffold_89 (3320807-3320915) | |
| 258-368, gnl|oryCun1|scaffold_97661 (1721-1837) | |
| 258-368, gnl|oryCun1|scaffold_97661 (1834-1748) | |
| 258-368, gnl|panTro1|chr23 (28382376-28382489) | |
| 258-368, gnl|panTro1|chr23 (28382459-28382395) | |
| 258-368, gnl|rheMac2|chr16 (5444332-5444422) | |
| 258-368, gnl|rheMac2|chr3 (70161402-70161501) | |
| 258-368, gnl|rn3|chr14 (85566061-85565948) | |
| 258-368, gnl|rn3|chr14 (85565951-85566042) | |
| 258-368, gnl|tetNig1|chr10 (10557463-10557361) | |
| 258-368, gnl|tetNig1|chr7 (7714894-7714945) | |
| 258-368, gnl|xenTro1|scaffold_207 (493672-493773) | |
| 458-582, gnl|bosTau2|chr17 (39494652-39494528) | |
| 458-582, gnl|canFam2|chr26 (25820889-25821044) | |
| 458-582, gnl|canFam2|chrX (66045537-66045681) | |
| 458-582, gnl|danRer3|chrNA (120636169-120636024) | |
| 458-582, gnl|danRer3|chrNA (120636023-120636167) | |
| 458-582, gnl|dasNov1|scaffold_496 (122503-122658) | |
| 458-582, gnl|dasNov1|scaffold_496 (122648-122507) | |
| 458-582, gnl|echTel1|scaffold_36075 (996-1143) | |
| 458-582, gnl|echTel1|scaffold_36075 (1140-999) | |
| 458-582, gnl|fr1|chrUn (313474118-313473971) | |
| 458-582, gnl|fr1|chrUn (313473973-313474115) | |
| 458-582, gnl|galGal2|chr15 (10973899-10973750) | |
| 458-582, gnl|hg17|chr17 (5574687-5574832) | |
| 458-582, gnl|hg17|chr22 (28282047-28282202) | |
| 458-582, gnl|Hg17|chr22 (28282173-28282049) | |
| 458-582, gnl|loxAfr1|scaffold_113126 (353-204) | |
| 458-582, gnl|loxAfr1|scaffold_113126 (208-347) | |
| 458-582, gnl|mm7|chr11 (4841244-4841089) | |
| 458-582, gnl|mm7|chr11 (4841099-4841241) | |
| 458-582, gnl|Mm7|chr11 (4841116-4841240) | |
| 458-582, gnl|monDom2|scaffold_30 (15942636-15942496) | |
| 458-582, gnl|monDom2|scaffold_89 (3310766-3310915) | |
| 458-582, gnl|oryCun1|scaffold_201587 (110418-110573) | |
| 458-582, gnl|oryCun1|scaffold_201587 (110565-110421) | |
| 458-582, gnl|panTro1|chr23 (28374718-28374873) | |
| 458-582, gnl|panTro1|chr23 (28374863-28374725) | |
| 458-582, gnl|rheMac2|chr10 (73387768-73387923) | |
| 458-582, gnl|rheMac2|chr16 (5444477-5444619) | |
| 458-582, gnl|rn3|chr14 (85570778-85570623) | |
| 458-582, gnl|rn3|chr14 (85570633-85570774) | |
| 458-582, gnl|tetNig1|chr10 (10557895-10557746) | |
| 458-582, gnl|tetNig1|chr7 (7715508-7715650) | |
| 458-582, gnl|xenTro1|scaffold_207 (493077-493231) |
| Aligned organism(s): 97 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 103-229, gnl|bosTau2|chr17 (39497625-39497499) | |
| 103-229, gnl|canFam2|chr26 (25823911-25824071) | |
| 103-229, gnl|canFam2|chrX (66045197-66045343) | |
| 103-229, gnl|danRer3|chrNA (120626159-120626028) | |
| 103-229, gnl|danRer3|chrNA (120625999-120626151) | |
| 103-229, gnl|dasNov1|scaffold_57875 (83671-83511) | |
| 103-229, gnl|dasNov1|scaffold_57875 (83521-83668) | |
| 103-229, gnl|echTel1|scaffold_36075 (3110-3270) | |
| 103-229, gnl|echTel1|scaffold_36075 (3260-3122) | |
| 103-229, gnl|fr1|chrUn (313473037-313472907) | |
| 103-229, gnl|fr1|chrUn (313472907-313473027) | |
| 103-229, gnl|galGal2|chr15 (10972953-10972786) | |
| 103-229, gnl|hg17|chr17 (5574356-5574508) | |
| 103-229, gnl|hg17|chr22 (28290937-28291097) | |
| 103-229, gnl|Hg17|chr22 (28291074-28290948) | |
| 103-229, gnl|loxAfr1|scaffold_88972 (10097-9937) | |
| 103-229, gnl|loxAfr1|scaffold_88972 (9947-10085) | |
| 103-229, gnl|mm7|chr11 (4835511-4835351) | |
| 103-229, gnl|mm7|chr11 (4835361-4835508) | |
| 103-229, gnl|Mm7|chr11 (4835372-4835498) | |
| 103-229, gnl|monDom2|scaffold_30 (15942971-15942822) | |
| 103-229, gnl|monDom2|scaffold_89 (3326590-3326750) | |
| 103-229, gnl|oryCun1|scaffold_97661 (2241-2401) | |
| 103-229, gnl|oryCun1|scaffold_97661 (2391-2253) | |
| 103-229, gnl|panTro1|chr23 (28383599-28383759) | |
| 103-229, gnl|panTro1|chr23 (28383749-28383611) | |
| 103-229, gnl|rheMac2|chr16 (5444282-5444167) | |
| 103-229, gnl|rheMac2|chr16 (5444157-5444299) | |
| 103-229, gnl|rn3|chr14 (85565461-85565301) | |
| 103-229, gnl|rn3|chr14 (85565311-85565458) | |
| 103-229, gnl|tetNig1|chr10 (10556918-10556787) | |
| 103-229, gnl|tetNig1|chr7 (7714521-7714630) | |
| 103-229, gnl|xenTro1|scaffold_207 (498825-498988) | |
| 258-368, gnl|bosTau2|chr17 (39497089-39496979) | |
| 258-368, gnl|canFam2|chr26 (25823321-25823434) | |
| 258-368, gnl|canFam2|chrX (66045375-66045466) | |
| 258-368, gnl|danRer3|chrNA (120632341-120632252) | |
| 258-368, gnl|danRer3|chrNA (120633839-120633928) | |
| 258-368, gnl|dasNov1|scaffold_57875 (84225-84112) | |
| 258-368, gnl|dasNov1|scaffold_57875 (84116-84206) | |
| 258-368, gnl|echTel1|scaffold_36075 (2634-2737) | |
| 258-368, gnl|echTel1|scaffold_36075 (2737-2646) | |
| 258-368, gnl|fr1|chrUn (313473613-313473512) | |
| 258-368, gnl|fr1|chrUn (313473531-313473605) | |
| 258-368, gnl|galGal2|chr15 (10973469-10973356) | |
| 258-368, gnl|hg17|chr17 (5574542-5574632) | |
| 258-368, gnl|hg17|chr22 (28289721-28289834) | |
| 258-368, gnl|Hg17|chr22 (28289844-28289738) | |
| 258-368, gnl|mm7|chr11 (4836136-4836023) | |
| 258-368, gnl|mm7|chr11 (4836026-4836117) | |
| 258-368, gnl|Mm7|chr11 (4836011-4836117) | |
| 258-368, gnl|monDom2|scaffold_30 (15942799-15942706) | |
| 258-368, gnl|monDom2|scaffold_89 (3320807-3320915) | |
| 258-368, gnl|oryCun1|scaffold_97661 (1721-1837) | |
| 258-368, gnl|oryCun1|scaffold_97661 (1834-1748) | |
| 258-368, gnl|panTro1|chr23 (28382376-28382489) | |
| 258-368, gnl|panTro1|chr23 (28382459-28382395) | |
| 258-368, gnl|rheMac2|chr16 (5444332-5444422) | |
| 258-368, gnl|rheMac2|chr3 (70161402-70161501) | |
| 258-368, gnl|rn3|chr14 (85566061-85565948) | |
| 258-368, gnl|rn3|chr14 (85565951-85566042) | |
| 258-368, gnl|tetNig1|chr10 (10557463-10557361) | |
| 258-368, gnl|tetNig1|chr7 (7714894-7714945) | |
| 258-368, gnl|xenTro1|scaffold_207 (493672-493773) | |
| 458-582, gnl|bosTau2|chr17 (39494652-39494528) | |
| 458-582, gnl|canFam2|chr26 (25820889-25821044) | |
| 458-582, gnl|canFam2|chrX (66045537-66045681) | |
| 458-582, gnl|danRer3|chrNA (120636169-120636024) | |
| 458-582, gnl|danRer3|chrNA (120636023-120636167) | |
| 458-582, gnl|dasNov1|scaffold_496 (122503-122658) | |
| 458-582, gnl|dasNov1|scaffold_496 (122648-122507) | |
| 458-582, gnl|echTel1|scaffold_36075 (996-1143) | |
| 458-582, gnl|echTel1|scaffold_36075 (1140-999) | |
| 458-582, gnl|fr1|chrUn (313474118-313473971) | |
| 458-582, gnl|fr1|chrUn (313473973-313474115) | |
| 458-582, gnl|galGal2|chr15 (10973899-10973750) | |
| 458-582, gnl|hg17|chr17 (5574687-5574832) | |
| 458-582, gnl|hg17|chr22 (28282047-28282202) | |
| 458-582, gnl|Hg17|chr22 (28282173-28282049) | |
| 458-582, gnl|loxAfr1|scaffold_113126 (353-204) | |
| 458-582, gnl|loxAfr1|scaffold_113126 (208-347) | |
| 458-582, gnl|mm7|chr11 (4841244-4841089) | |
| 458-582, gnl|mm7|chr11 (4841099-4841241) | |
| 458-582, gnl|Mm7|chr11 (4841116-4841240) | |
| 458-582, gnl|monDom2|scaffold_30 (15942636-15942496) | |
| 458-582, gnl|monDom2|scaffold_89 (3310766-3310915) | |
| 458-582, gnl|oryCun1|scaffold_201587 (110418-110573) | |
| 458-582, gnl|oryCun1|scaffold_201587 (110565-110421) | |
| 458-582, gnl|panTro1|chr23 (28374718-28374873) | |
| 458-582, gnl|panTro1|chr23 (28374863-28374725) | |
| 458-582, gnl|rheMac2|chr10 (73387768-73387923) | |
| 458-582, gnl|rheMac2|chr16 (5444477-5444619) | |
| 458-582, gnl|rn3|chr14 (85570778-85570623) | |
| 458-582, gnl|rn3|chr14 (85570633-85570774) | |
| 458-582, gnl|tetNig1|chr10 (10557895-10557746) | |
| 458-582, gnl|tetNig1|chr7 (7715508-7715650) | |
| 458-582, gnl|xenTro1|scaffold_207 (493077-493231) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| fbs (0.175346) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |