Ss1.1-Pig4-TMW8032P22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACAGATTCAGGTGTTATCAGGCCACCTGCAGTGGGTTTACTGCTGCTCCATCTCACCAG ACTGCAGCATGCTATGTTCTGCGGCCGGAGAGAAGTCGGTCTTTCTGTGGAGCATGCGGT CCTACACGTTAATCCGGAAGCTAGAGGGCCACCAAAGCAGCGTTGTCTCTTGTGACTTCT CCCCCGACTCTGCCTTGCTTGTCACGGCTTCTTACGATACCAATGTGATCATGTGGGACC CCTACACTGGCGAGAGGCTGAGGTCACTCCACCACACCCAGCTCAGCCCCCCCATGGATG ACAGTGATGTCCACATAAGCTCCCTGAGATCTGTGTGCTTCTCCCCCGAAGGCTTGTACC TCGCTACAGTGGCAGATGACAGGCTCCTCAGGATCTGGGCTCTCGAACTGAAAACTCCAA TTGCATTTGCTCCTATGACCAATGGTCTTTGCTGCACATTTTTTCCACATGGTGGAGTTA TTGCCACAGGGACAAGGGATGGCCATGTCCAGTTCTGGACAGCTCCTAGGGTCCTGTCAT CACTCAAGCACTTATGCCGGAAAGCCCTTCGAAGTTTCCTGACAACGTACCAAGTGCTAG CACTGCCAATCCCCAAAAAGATGAAAGAGTTCCTCACGTACAGGACTTTTTAAGCCATTC TCCATAGTCTTGTTTTCCTTGTAGCAGGATGAATCTTCCTGACAAAGGAGTAGCCGGAGT AATGGGCCAAACATCTGGTCGTGGATGGAAATAGAATTTCTCTTTGGGATTGTGAATAGA ATGTAGCAAAACCAGATTCCAGGGGATCCGTCACGGGTCTTTTCTCCGTGACATGTGAGA GTCAGTCAGAGAAGAGGGGATTCCACTCCCGAGGTGACAGAGCCTGAGGACCTTGACTCT TTAGCCCACCTACACACGGCAGTGCCGTTTTGATTCAGAATGCCGTAGCTGAGAGGAGCA CCTGGGCTTTGAGCCCCTCTGTGGTAACAGAGAAGTTTCAACTCCCTTGACTGGGTGTGG CTTCTTCCAAGTGTCCATCTCCCACTAGTCAGAGTGGCCTTGGCCTGGGCAAGTGCTTGC CTTCCTCTCGCCCCCTCTGACGGTCTGCTGGGAGGTATTACTTAGCTTAACGAAGTACAG GTGACTCAGAGGCCGTGCTCCTGACAGACACTAGAATTGGGTTTTTTTTTTTGTTTTGTT TTGTTTTTTAAACAATGGTGTGCATGTGCAGGAGGTGGCAGATTTGTGTGTCAGGTTACA CAGGATGTATCCCTAAACTGCATGACTGTTCAGATGGCTACTGACTTGCCAGTTGTTTGC CATCCATTAGCATATTTATTTGCTGTTCTCAACACATGTTAAGGTACAACTGTGCTTTTC TCGATGGTATCTAAAAACCATAGTACTTAATTCCAACAGTTGTGAAGATGTCTCTTAGTT GTGTAAAGAATCCGTGTCATCACTTCAGCTGATTTCCTCCTGTACAAGATCTGACTTGAC TGCTTCACCTCATTGGACTCATCAGCCAGTTTCAACTCTACTCCCAAACAAAATTAGCTC CTCAAAAGTACTGTTCTCCTTCAGTGGCGTATAGTTACCTAATCAAGACACCTCATTCAA AGTCTGCCTTTGGAAAATTTAATATATTTTAAATTATTTTAAAAGAAATGCAACATCTTA TCCTTTGGCTTTCTTACTAGGTGCTTTGTGGAGGCCTGTGTACCATATATAAACGTGTAG AAAAAGCAGAGGAGTTTCTCCTCTGCCGCCTTTGTTGCTGAAAGAAAAACATTTCAAGAT GAGAGGTTTTCATTGAAGGAAAAAAGTTTAAACATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACAGATTCAGGTGTTATCAGGCCACCTGCAGTGGGTTTACTGCTGCTCCATCTCACCAG ACTGCAGCATGCTATGTTCTGCGGCCGGAGAGAAGTCGGTCTTTCTGTGGAGCATGCGGT CCTACACGTTAATCCGGAAGCTAGAGGGCCACCAAAGCAGCGTTGTCTCTTGTGACTTCT CCCCCGACTCTGCCTTGCTTGTCACGGCTTCTTACGATACCAATGTGATCATGTGGGACC CCTACACTGGCGAGAGGCTGAGGTCACTCCACCACACCCAGCTCAGCCCCCCCATGGATG ACAGTGATGTCCACATAAGCTCCCTGAGATCTGTGTGCTTCTCCCCCGAAGGCTTGTACC TCGCTACAGTGGCAGATGACAGGCTCCTCAGGATCTGGGCTCTCGAACTGAAAACTCCAA TTGCATTTGCTCCTATGACCAATGGTCTTTGCTGCACATTTTTTCCACATGGTGGAGTTA TTGCCACAGGGACAAGGGATGGCCATGTCCAGTTCTGGACAGCTCCTAGGGTCCTGTCAT CACTCAAGCACTTATGCCGGAAAGCCCTTCGAAGTTTCCTGACAACGTACCAAGTGCTAG CACTGCCAATCCCCAAAAAGATGAAAGAGTTCCTCACGTACAGGACTTTTTAAGCCATTC TCCATAGTCTTGTTTTCCTTGTAGCAGGATGAATCTTCCTGACAAAGGAGTAGCCGGAGT AATGGGCCAAACATCTGGTCGTGGATGGAAATAGAATTTCTCTTTGGGATTGTGAATAGA ATGTAGCAAAACCAGATTCCAGGGGATCCGTCACGGGTCTTTTCTCCGTGACATGTGAGA GTCAGTCAGAGAAGAGGGGATTCCACTCCCGAGGTGACAGAGCCTGAGGACCTTGACTCT TTAGCCCACCTACACACGGCAGTGCCGTTTTGATTCAGAATGCCGTAGCTGAGAGGAGCA CCTGGGCTTTGAGCCCCTCTGTGGTAACAGAGAAGTTTCAACTCCCTTGACTGGGTGTGG CTTCTTCCAAGTGTCCATCTCCCACTAGTCAGAGTGGCCTTGGCCTGGGCAAGTGCTTGC CTTCCTCTCGCCCCCTCTGACGGTCTGCTGGGAGGTATTACTTAGCTTAACGAAGTACAG GTGACTCAGAGGCCGTGCTCCTGACAGACACTAGAATTGGGTTTTTTTTTTTGTTTTGTT TTGTTTTTTAAACAATGGTGTGCATGTGCAGGAGGTGGCAGATTTGTGTGTCAGGTTACA CAGGATGTATCCCTAAACTGCATGACTGTTCAGATGGCTACTGACTTGCCAGTTGTTTGC CATCCATTAGCATATTTATTTGCTGTTCTCAACACATGTTAAGGTACAACTGTGCTTTTC TCGATGGTATCTAAAAACCATAGTACTTAATTCCAACAGTTGTGAAGATGTCTCTTAGTT GTGTAAAGAATCCGTGTCATCACTTCAGCTGATTTCCTCCTGTACAAGATCTGACTTGAC TGCTTCACCTCATTGGACTCATCAGCCAGTTTCAACTCTACTCCCAAACAAAATTAGCTC CTCAAAAGTACTGTTCTCCTTCAGTGGCGTATAGTTACCTAATCAAGACACCTCATTCAA AGTCTGCCTTTGGAAAATTTAATATATTTTAAATTATTTTAAAAGAAATGCAACATCTTA TCCTTTGGCTTTCTTACTAGGTGCTTTGTGGAGGCCTGTGTACCATATATAAACGTGTAG AAAAAGCAGAGGAGTTTCTCCTCTGCCGCCTTTGTTGCTGAAAGAAAAACATTTCAAGAT GAGAGGTTTTCATTGAAGGAAAAAAGTTTAAACATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 649-1826, + strand, RNAz p=0.999421 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 649-1826, + strand, RNAz p=0.999421 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_018639, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 98-271, gnl|bosTau2|chr17 (32230489-32230662) | |
| 98-271, gnl|canFam2|chr26 (17467906-17468048) | |
| 98-271, gnl|danRer3|chr5 (2877875-2877738) | |
| 98-271, gnl|dasNov1|scaffold_63911 (6838-6980) | |
| 98-271, gnl|echTel1|scaffold_75404 (9834-9693) | |
| 98-271, gnl|fr1|chrUn (222770900-222771049) | |
| 98-271, gnl|galGal2|chr15 (11040288-11040146) | |
| 98-271, gnl|hg17|chr12 (116936844-116936986) | |
| 98-271, gnl|Hg17|chr12 (116937036-116936863) | |
| 98-271, gnl|loxAfr1|scaffold_16953 (42683-42825) | |
| 98-271, gnl|mm7|chr5 (116605650-116605518) | |
| 98-271, gnl|Mm7|chr5 (116605466-116605639) | |
| 98-271, gnl|monDom2|scaffold_101 (2711763-2711621) | |
| 98-271, gnl|oryCun1|scaffold_209149 (23955-23818) | |
| 98-271, gnl|panTro1|chr10 (119923832-119923974) | |
| 98-271, gnl|rheMac2|chr11 (118981007-118981148) | |
| 98-271, gnl|rn3|chr12 (40272068-40272200) | |
| 98-271, gnl|tetNig1|chr12 (4447163-4447036) | |
| 98-271, gnl|xenTro1|scaffold_2 (501962-502089) | |
| 490-925, gnl|bosTau2|chr17 (32232298-32232724) | |
| 490-925, gnl|Hg17|chr12 (116934884-116934453) | |
| 1199-1826, gnl|bosTau2|chr17 (32233060-32233699) | |
| 1199-1826, gnl|Hg17|chr12 (116934084-116933441) | |
| 1199-1826, gnl|Mm7|chr5 (116607707-116608289) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-271, gnl|bosTau2|chr17 (32230489-32230662) | |
| 98-271, gnl|canFam2|chr26 (17467906-17468048) | |
| 98-271, gnl|danRer3|chr5 (2877875-2877738) | |
| 98-271, gnl|dasNov1|scaffold_63911 (6838-6980) | |
| 98-271, gnl|echTel1|scaffold_75404 (9834-9693) | |
| 98-271, gnl|fr1|chrUn (222770900-222771049) | |
| 98-271, gnl|galGal2|chr15 (11040288-11040146) | |
| 98-271, gnl|hg17|chr12 (116936844-116936986) | |
| 98-271, gnl|Hg17|chr12 (116937036-116936863) | |
| 98-271, gnl|loxAfr1|scaffold_16953 (42683-42825) | |
| 98-271, gnl|mm7|chr5 (116605650-116605518) | |
| 98-271, gnl|Mm7|chr5 (116605466-116605639) | |
| 98-271, gnl|monDom2|scaffold_101 (2711763-2711621) | |
| 98-271, gnl|oryCun1|scaffold_209149 (23955-23818) | |
| 98-271, gnl|panTro1|chr10 (119923832-119923974) | |
| 98-271, gnl|rheMac2|chr11 (118981007-118981148) | |
| 98-271, gnl|rn3|chr12 (40272068-40272200) | |
| 98-271, gnl|tetNig1|chr12 (4447163-4447036) | |
| 98-271, gnl|xenTro1|scaffold_2 (501962-502089) | |
| 490-925, gnl|bosTau2|chr17 (32232298-32232724) | |
| 490-925, gnl|Hg17|chr12 (116934884-116934453) | |
| 1199-1826, gnl|bosTau2|chr17 (32233060-32233699) | |
| 1199-1826, gnl|Hg17|chr12 (116934084-116933441) | |
| 1199-1826, gnl|Mm7|chr5 (116607707-116608289) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| sme (0.610874) | |
| hlv (0.417769) | |
| ssp (0.406559) | |
| bla (0.373042) | |
| sin (0.349895) | |
| fhi (0.339155) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| ste (0.270416) | |
| spc (0.226732) | |
| tes (0.207814) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nje (0.16592) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| cag (0.151194) | |
| spl (0.143184) | |
| csk (0.140746) | |
| cst (0.140036) | |
| che (0.136314) | |
| cov (0.132153) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.610874) | |
| hlv (0.417769) | |
| ssp (0.406559) | |
| bla (0.373042) | |
| sin (0.349895) | |
| fhi (0.339155) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| ste (0.270416) | |
| spc (0.226732) | |
| tes (0.207814) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nje (0.16592) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| cag (0.151194) | |
| spl (0.143184) | |
| csk (0.140746) | |
| cst (0.140036) | |
| che (0.136314) | |
| cov (0.132153) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |