Ss1.1-Pig4-TMW8033A16.5
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GGAAAAAAGACTCCGCTGGGAGAAGCCCAATGCGAGGTGCTGCAGACTGGTTTGTCCAGC
CGCTGGGTTTTACCGCGGTGGCTCCCAAATTCTACTCACGCGGTTGGGCCTGGGTGAGGG
CTTAGCGCGCCCGGCGCCACCCTCCAGGGGAACCTAGGAACTGAAGACTGGGCGCTGGCG
CGCGGCGGTCTCGGTGAACAGGGCTCCTCACAAGCGCTCACAGGTGCTCGTGGCCGGGCG
GCCAGGTTATCCCCGGTGTCCTGGAACCCCACACCACGCGTCCCTGGGTCTCTTCCTTCC
CTTTGCGCGGACGACTGCGCGAGGGCCTCAGTTCCTGGAAAGCGACGCCCCTCTGCTTCG
TGAAACTCTGCGACTGAGGCCTCCCAGGCTTAGCTCCGTGTTCCTTGGAAACGGTGACAC
TACTTCTGGCTGTGAATTGACCACCCTCCTCCAGTTCGGGCAGCTGTTAAGTCGCCCCTT
TCACGGGCACCGAACATTGACGAGTATCTTCCCCCAAAGGTTTCTTAGTTCTTGGGAGTG
ACTCTGTTCTAAACTAAAGCGATTTATTATAATAGTTGACTTATTCAGACTTAGGAGATG
GCTTCTTTGCAAAGGAAAGGGCTGCAGGCAAGGGTTCTCAGCTCTGAAGAAGAGGAAAAA
CTGAAAAGAGACCAGGCTTTAGTGTCTGATTTTAAACAGCAAAAACTGGAAAAAGAGGCT
CAGAAAAACTGGGACCTTTTTTACAAAAGAAATAGCACTAATTTCTTCAAAGATAGACAC
TGGACCACCAGAGAGTTTGAGGAGCTCAGATCTTGTAGAGAGTTTGAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GGAAAAAAGACTCCGCTGGGAGAAGCCCAATGCGAGGTGCTGCAGACTGGTTTGTCCAGC
CGCTGGGTTTTACCGCGGTGGCTCCCAAATTCTACTCACGCGGTTGGGCCTGGGTGAGGG
CTTAGCGCGCCCGGCGCCACCCTCCAGGGGAACCTAGGAACTGAAGACTGGGCGCTGGCG
CGCGGCGGTCTCGGTGAACAGGGCTCCTCACAAGCGCTCACAGGTGCTCGTGGCCGGGCG
GCCAGGTTATCCCCGGTGTCCTGGAACCCCACACCACGCGTCCCTGGGTCTCTTCCTTCC
CTTTGCGCGGACGACTGCGCGAGGGCCTCAGTTCCTGGAAAGCGACGCCCCTCTGCTTCG
TGAAACTCTGCGACTGAGGCCTCCCAGGCTTAGCTCCGTGTTCCTTGGAAACGGTGACAC
TACTTCTGGCTGTGAATTGACCACCCTCCTCCAGTTCGGGCAGCTGTTAAGTCGCCCCTT
TCACGGGCACCGAACATTGACGAGTATCTTCCCCCAAAGGTTTCTTAGTTCTTGGGAGTG
ACTCTGTTCTAAACTAAAGCGATTTATTATAATAGTTGACTTATTCAGACTTAGGAGATG
GCTTCTTTGCAAAGGAAAGGGCTGCAGGCAAGGGTTCTCAGCTCTGAAGAAGAGGAAAAA
CTGAAAAGAGACCAGGCTTTAGTGTCTGATTTTAAACAGCAAAAACTGGAAAAAGAGGCT
CAGAAAAACTGGGACCTTTTTTACAAAAGAAATAGCACTAATTTCTTCAAAGATAGACAC
TGGACCACCAGAGAGTTTGAGGAGCTCAGATCTTGTAGAGAGTTTGAA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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629-822, LB01610.CR_J24 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT810064.1|),
blast E-value=0, identity=95.36% |
|
629-822, LB00418.CR_J19 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT832918.1|),
blast E-value=0, identity=95.36% |
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629-822, LB00497.CR_F12 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT850874.1|),
blast E-value=0, identity=95.36% |
|
629-822, LB01124.CR_D07 GC_BGC-11 Bos taurus cDNA clone IMAGE (gb|DV839216.1|),
blast E-value=0, identity=95.36% |
|
629-822, LB02312.CR_E17 GC_BGC-23 Bos taurus cDNA clone IMAGE (gb|EE245693.1|),
blast E-value=0, identity=95.36% |
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629-822, LB01736.CR_M06 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE334491.1|),
blast E-value=0, identity=95.36% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
629-822, LB01610.CR_J24 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT810064.1|),
blast E-value=0, identity=95.36% |
|
629-822, LB00418.CR_J19 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT832918.1|),
blast E-value=0, identity=95.36% |
|
629-822, LB00497.CR_F12 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT850874.1|),
blast E-value=0, identity=95.36% |
|
629-822, LB01124.CR_D07 GC_BGC-11 Bos taurus cDNA clone IMAGE (gb|DV839216.1|),
blast E-value=0, identity=95.36% |
|
629-822, LB02312.CR_E17 GC_BGC-23 Bos taurus cDNA clone IMAGE (gb|EE245693.1|),
blast E-value=0, identity=95.36% |
|
629-822, LB01736.CR_M06 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE334491.1|),
blast E-value=0, identity=95.36% |
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68-467, gnl|bosTau2|chr1 (98821075-98820676) |
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68-467, gnl|Hg17|chr3 (15443963-15443497) |
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68-467, gnl|Mm7|chr14 (28924598-28924184) |
| |
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589-822, gnl|bosTau2|chr1 (98820129-98819896) |
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589-822, gnl|canFam2|chr23 (30256147-30255921) |
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589-822, gnl|danRer3|chr16 (39964699-39964902) |
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589-822, gnl|dasNov1|scaffold_133223 (3918-3692) |
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589-822, gnl|fr1|chrUn (191253664-191253441) |
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589-822, gnl|galGal2|chr2 (40510413-40510187) |
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589-822, gnl|hg17|chr3 (15442793-15443019) |
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589-822, gnl|Hg17|chr3 (15443031-15442798) |
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589-822, gnl|loxAfr1|scaffold_10204 (26193-26419) |
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589-822, gnl|mm7|chr14 (28923239-28923465) |
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589-822, gnl|Mm7|chr14 (28923474-28923244) |
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589-822, gnl|monDom2|scaffold_7 (71078696-71078916) |
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589-822, gnl|oryCun1|scaffold_210797 (82443-82217) |
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589-822, gnl|panTro1|chr2 (16058531-16058757) |
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589-822, gnl|rheMac2|chr2 (157756154-157756380) |
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589-822, gnl|rn3|chr16 (6938134-6938360) |
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589-822, gnl|tetNig1|chrUn_random (41385643-41385845) |
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589-822, gnl|xenTro1|scaffold_1228 (3577-3352) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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68-467, gnl|bosTau2|chr1 (98821075-98820676) |
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68-467, gnl|Hg17|chr3 (15443963-15443497) |
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68-467, gnl|Mm7|chr14 (28924598-28924184) |
| |
|
589-822, gnl|bosTau2|chr1 (98820129-98819896) |
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589-822, gnl|canFam2|chr23 (30256147-30255921) |
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589-822, gnl|danRer3|chr16 (39964699-39964902) |
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589-822, gnl|dasNov1|scaffold_133223 (3918-3692) |
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589-822, gnl|fr1|chrUn (191253664-191253441) |
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589-822, gnl|galGal2|chr2 (40510413-40510187) |
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589-822, gnl|hg17|chr3 (15442793-15443019) |
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589-822, gnl|Hg17|chr3 (15443031-15442798) |
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589-822, gnl|loxAfr1|scaffold_10204 (26193-26419) |
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589-822, gnl|mm7|chr14 (28923239-28923465) |
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589-822, gnl|Mm7|chr14 (28923474-28923244) |
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589-822, gnl|monDom2|scaffold_7 (71078696-71078916) |
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589-822, gnl|oryCun1|scaffold_210797 (82443-82217) |
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589-822, gnl|panTro1|chr2 (16058531-16058757) |
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589-822, gnl|rheMac2|chr2 (157756154-157756380) |
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589-822, gnl|rn3|chr16 (6938134-6938360) |
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589-822, gnl|tetNig1|chrUn_random (41385643-41385845) |
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589-822, gnl|xenTro1|scaffold_1228 (3577-3352) |
