Ss1.1-Pig4-TMW8033A17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTCTCCGGTTCGCGATCTCTCTGAGGGTGCCATGAGTTGCATCAATTTGCCCACCGTAC TGCCCGGCTCCCCCAGCAAGACCCGGGGGCAGATCCAGGTGATTCTCGGACCCATGTTCT CGGGAAAAAGTACGGAGCTGATGAGACGGGTCCGCCGCTTCCAGATTGCCCAGTACAAGT GCCTGGTGATCAAATACGCCAAAGACACGCGCTACAGCAGCAACTTCTCCACGCATGACC GGAACACCATGGAGGCCCTGCCAGCCTGTGTGCTCCGGGACGTGGCCCAGGAGGCCCTGG GCGTGTCTGTCATAGGCATCGACGAAGGGCAGTTTTTCCCTGACATCGTGGAGTTCAGCG AGACCATGGCCAACGAAGGCAAGACCGTGATTGTGGCCGCCTTGGACGGGACCTTCCAGA GGAAGGCTTTCGGGAGCATCTTGAACCTGGTGCCCCTGGCCGAGAGCGTGGTGAAGCTGA CGGCCGTGTGCATGGAGTGCTTCCGGGAGGCCGCCTACACCAAGAGGCTGGGCGTGGAGA AAGAGGTCGAGGTGATCGGAGGAGCGGACAAGTACCACTCCGTGTGCCGCCTCTGCTACT TCAAGAAGACAGGGCTGCCCATCGGGCTGGACAGCAAGGAGAACAGAGAGAACGGCCTGG CGCTGGGCGTCAGGAGGCTGTTCGGCCCCCATCAGCTCCTGCAGTGCAGCCAGGCCAACT GAGGCGCCGGCCCGCTGCTGAGCCCCGGAGGCCGCCTGCGCCCCAGGAGGAAGCGGGGGC GGTTGTCCAGCACCAGGAGCTGCCCGCCCTTCCCGGCCGAGGCCGGCGGTCTGCTCGGCA CACTTCCCTCCTGGGCCGCCCGCTGGCCTCTCTCAGTTCCCGTCCCCGCTGCTGGGCCGC TGCTCACAGGCCGCCCCAGGCCGGAGCTGGCAGCTCCGTGGCGAGGGGTCTGGCCCCGGC AGACGTCCCCTCCGCTCCCCCGGGGTGAGGCTGGAGCCACAGCCGCTGACAGGGGTGCTG CTGGCCTCTTCCCCCTTTGTGGCTTTGGCTGCCGAGTTTCTGTTCTTGCTGGGAAGCCCG AGCCCCCACCTCTGGCTGGCACCGAGCCTCTCGCGCACACAGACTGAGCCCCTCTGAGGA CAGCCAGACTGGGGCACTCTCACTTCCCTGTGGCCTGCAAGCCCTTCCGGGGCTCAGCTC CCAGGGCTCCTCTTTTAGGGAAGGGCTGTGGCCTTCTGTCAAGTTCTCTGCCATGAATAA CCACCTGGAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTCTCCGGTTCGCGATCTCTCTGAGGGTGCCATGAGTTGCATCAATTTGCCCACCGTAC TGCCCGGCTCCCCCAGCAAGACCCGGGGGCAGATCCAGGTGATTCTCGGACCCATGTTCT CGGGAAAAAGTACGGAGCTGATGAGACGGGTCCGCCGCTTCCAGATTGCCCAGTACAAGT GCCTGGTGATCAAATACGCCAAAGACACGCGCTACAGCAGCAACTTCTCCACGCATGACC GGAACACCATGGAGGCCCTGCCAGCCTGTGTGCTCCGGGACGTGGCCCAGGAGGCCCTGG GCGTGTCTGTCATAGGCATCGACGAAGGGCAGTTTTTCCCTGACATCGTGGAGTTCAGCG AGACCATGGCCAACGAAGGCAAGACCGTGATTGTGGCCGCCTTGGACGGGACCTTCCAGA GGAAGGCTTTCGGGAGCATCTTGAACCTGGTGCCCCTGGCCGAGAGCGTGGTGAAGCTGA CGGCCGTGTGCATGGAGTGCTTCCGGGAGGCCGCCTACACCAAGAGGCTGGGCGTGGAGA AAGAGGTCGAGGTGATCGGAGGAGCGGACAAGTACCACTCCGTGTGCCGCCTCTGCTACT TCAAGAAGACAGGGCTGCCCATCGGGCTGGACAGCAAGGAGAACAGAGAGAACGGCCTGG CGCTGGGCGTCAGGAGGCTGTTCGGCCCCCATCAGCTCCTGCAGTGCAGCCAGGCCAACT GAGGCGCCGGCCCGCTGCTGAGCCCCGGAGGCCGCCTGCGCCCCAGGAGGAAGCGGGGGC GGTTGTCCAGCACCAGGAGCTGCCCGCCCTTCCCGGCCGAGGCCGGCGGTCTGCTCGGCA CACTTCCCTCCTGGGCCGCCCGCTGGCCTCTCTCAGTTCCCGTCCCCGCTGCTGGGCCGC TGCTCACAGGCCGCCCCAGGCCGGAGCTGGCAGCTCCGTGGCGAGGGGTCTGGCCCCGGC AGACGTCCCCTCCGCTCCCCCGGGGTGAGGCTGGAGCCACAGCCGCTGACAGGGGTGCTG CTGGCCTCTTCCCCCTTTGTGGCTTTGGCTGCCGAGTTTCTGTTCTTGCTGGGAAGCCCG AGCCCCCACCTCTGGCTGGCACCGAGCCTCTCGCGCACACAGACTGAGCCCCTCTGAGGA CAGCCAGACTGGGGCACTCTCACTTCCCTGTGGCCTGCAAGCCCTTCCGGGGCTCAGCTC CCAGGGCTCCTCTTTTAGGGAAGGGCTGTGGCCTTCTGTCAAGTTCTCTGCCATGAATAA CCACCTGGAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 129-242, gnl|bosTau2|chr19 (47855084-47855197) | |
| 129-242, gnl|canFam2|chr9 (5958054-5957912) | |
| 129-242, gnl|danRer3|chr1 (38782454-38782575) | |
| 129-242, gnl|dasNov1|scaffold_300521 (431-292) | |
| 129-242, gnl|echTel1|scaffold_308935 (760-908) | |
| 129-242, gnl|fr1|chrUn (79808499-79808355) | |
| 129-242, gnl|galGal2|chr3_random (609275-609137) | |
| 129-242, gnl|hg17|chr17 (73692724-73692868) | |
| 129-242, gnl|Hg17|chr17 (73692843-73692730) | |
| 129-242, gnl|loxAfr1|scaffold_12748 (14480-14621) | |
| 129-242, gnl|mm7|chr11 (117933709-117933853) | |
| 129-242, gnl|Mm7|chr11 (117933828-117933715) | |
| 129-242, gnl|monDom2|scaffold_18 (7078213-7078351) | |
| 129-242, gnl|panTro1|chr19 (77243222-77243366) | |
| 129-242, gnl|rheMac2|chr16 (73479945-73480089) | |
| 129-242, gnl|rn3|chr3 (108929000-108929113) | |
| 129-242, gnl|tetNig1|chr18 (2199984-2200123) | |
| 424-547, gnl|bosTau2|chr19 (47865840-47865963) | |
| 424-547, gnl|canFam2|chr9 (5967096-5966972) | |
| 424-547, gnl|danRer3|chr1 (38781779-38781903) | |
| 424-547, gnl|echTel1|scaffold_218495 (6667-6543) | |
| 424-547, gnl|fr1|chrUn (79809370-79809247) | |
| 424-547, gnl|galGal2|chr3_random (609850-609726) | |
| 424-547, gnl|hg17|chr17 (73682724-73682848) | |
| 424-547, gnl|Hg17|chr17 (73682847-73682724) | |
| 424-547, gnl|loxAfr1|scaffold_12748 (3579-3703) | |
| 424-547, gnl|mm7|chr11 (117925392-117925611) | |
| 424-547, gnl|Mm7|chr11 (117925613-117925490) | |
| 424-547, gnl|monDom2|scaffold_18 (7064390-7064514) | |
| 424-547, gnl|oryCun1|scaffold_129959 (6206-6082) | |
| 424-547, gnl|panTro1|chr19 (77233184-77233308) | |
| 424-547, gnl|rheMac2|chr16 (73468198-73468322) | |
| 424-547, gnl|rn3|chr3 (108928696-108928815) | |
| 424-547, gnl|tetNig1|chr18 (2199080-2199203) | |
| 424-547, gnl|xenTro1|scaffold_293 (13195-13319) | |
| 821-1136, gnl|bosTau2|chr19 (47866608-47866915) | |
| 821-1136, gnl|Hg17|chr17 (73682291-73682010) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 129-242, gnl|bosTau2|chr19 (47855084-47855197) | |
| 129-242, gnl|canFam2|chr9 (5958054-5957912) | |
| 129-242, gnl|danRer3|chr1 (38782454-38782575) | |
| 129-242, gnl|dasNov1|scaffold_300521 (431-292) | |
| 129-242, gnl|echTel1|scaffold_308935 (760-908) | |
| 129-242, gnl|fr1|chrUn (79808499-79808355) | |
| 129-242, gnl|galGal2|chr3_random (609275-609137) | |
| 129-242, gnl|hg17|chr17 (73692724-73692868) | |
| 129-242, gnl|Hg17|chr17 (73692843-73692730) | |
| 129-242, gnl|loxAfr1|scaffold_12748 (14480-14621) | |
| 129-242, gnl|mm7|chr11 (117933709-117933853) | |
| 129-242, gnl|Mm7|chr11 (117933828-117933715) | |
| 129-242, gnl|monDom2|scaffold_18 (7078213-7078351) | |
| 129-242, gnl|panTro1|chr19 (77243222-77243366) | |
| 129-242, gnl|rheMac2|chr16 (73479945-73480089) | |
| 129-242, gnl|rn3|chr3 (108929000-108929113) | |
| 129-242, gnl|tetNig1|chr18 (2199984-2200123) | |
| 424-547, gnl|bosTau2|chr19 (47865840-47865963) | |
| 424-547, gnl|canFam2|chr9 (5967096-5966972) | |
| 424-547, gnl|danRer3|chr1 (38781779-38781903) | |
| 424-547, gnl|echTel1|scaffold_218495 (6667-6543) | |
| 424-547, gnl|fr1|chrUn (79809370-79809247) | |
| 424-547, gnl|galGal2|chr3_random (609850-609726) | |
| 424-547, gnl|hg17|chr17 (73682724-73682848) | |
| 424-547, gnl|Hg17|chr17 (73682847-73682724) | |
| 424-547, gnl|loxAfr1|scaffold_12748 (3579-3703) | |
| 424-547, gnl|mm7|chr11 (117925392-117925611) | |
| 424-547, gnl|Mm7|chr11 (117925613-117925490) | |
| 424-547, gnl|monDom2|scaffold_18 (7064390-7064514) | |
| 424-547, gnl|oryCun1|scaffold_129959 (6206-6082) | |
| 424-547, gnl|panTro1|chr19 (77233184-77233308) | |
| 424-547, gnl|rheMac2|chr16 (73468198-73468322) | |
| 424-547, gnl|rn3|chr3 (108928696-108928815) | |
| 424-547, gnl|tetNig1|chr18 (2199080-2199203) | |
| 424-547, gnl|xenTro1|scaffold_293 (13195-13319) | |
| 821-1136, gnl|bosTau2|chr19 (47866608-47866915) | |
| 821-1136, gnl|Hg17|chr17 (73682291-73682010) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| nms (0.427716) | |
| med (0.232504) | |
| nep (0.183925) | |
| fty (0.17584) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.427716) | |
| med (0.232504) | |
| nep (0.183925) | |
| fty (0.17584) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) |