Ss1.1-Pig4-TMW8033A19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTAACAGCATCTCCAAGTCCCCTGGTCCCAGCTCCCCAAAGGAGCCCCTCCTGCTCAGC CGTGACATCAGCCGCTCCGAATCCCTGCGATGCTCCAGTAGCTGCTCGCAGCAGATCTTC CGGCCATGTGACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTTGGGCAGGCCATC AAGGTGACACACAAAGCCACAGGCAAAGTGATGGTCATGAAGGAGTTAATTCGGTGTGAT GAGGAGACACAGAAGACTTTCCTGACTGAGGTGAAGGTGATGCGCAGCCTGGACCACCCC AACGTGCTCAAGTTCATCGGTGTGCTGTACAAGGACAAGAAGCTGAACCTGCTGACTGAG TACATCGAGGGGGGCACACTGAAGGACTTTCTGCGCAGCGTGGACCCGTTCCCCTGGCAG CAGAAGGTCAGATTTGCCAAAGGCATCGCCTCTGGAATGGCCTATTTACATTCCATGTGC ATCATCCACCGGGACCTGAACTCACACAACTGCCTCATCAAGCTGGACAAGACTGTGGTG GTGGCTGACTTTGGGCTGTCACGGCTCATAGTGGAGGAGCGGAAGAAGCCCTCAGTCGAG AAGGCCGCCACCAAGAAACGTACCTTACGCAAGAGTGACCGCAAGAAGCGCTACACGGTA GTGGGAAACCCCTACTGGATGGCCCCTGAGATGCTGAACGGAAAGAGCTATGATGAGACG GTGGATGTCTTCTCTTTTGGGATCGTGCTCTGTGAGATCATTGGGCAGGTGTATGCAGAT CCTGATTGCCTGCCCCGAACACTGGACTTTGGCCTCAACGTGAAGCTTTTCTGGGAGAAG TTTGTTCCCACAGACTGCCCCCCGGCCTTCTTCCCCCTGGCTGCCATCTGCTGCAAACTG GAGCCCGAGAGCAGACCCGCATTCTCAAAACTGGAGGACTCCTTTGAGGCCCTCTCCCTG TACCTGGGGGAGTTGGGCATCCCGCTGCCAGCCGAGCTGGAGGAACTAGACCATACTGTG AGCCTGCAGTACGGCCTGATCCGGGACTCGCCCCCCTAGCCCTGGCCGAGCCCCCTGCGG GGGGGCGTCCACAGCCACCACTGCCCCCTCTTCGCCCAGCCCTGCCATGGGCGGGGCCAT CCGGGCGTCTCGTGGATTGGCAGCTTGTTTAGAAGCAGAACAAGCCATTCTACTACCTCC CTAGGAGGCGAGCGGGCCCAGCACCAGGGAAACACATCTCCGCATGTTCTGAGGCCTGGT TATCGTCTGTAAATCCAACACTCGCCTGAAAGCTGTGAAGAAGAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTAACAGCATCTCCAAGTCCCCTGGTCCCAGCTCCCCAAAGGAGCCCCTCCTGCTCAGC CGTGACATCAGCCGCTCCGAATCCCTGCGATGCTCCAGTAGCTGCTCGCAGCAGATCTTC CGGCCATGTGACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTTGGGCAGGCCATC AAGGTGACACACAAAGCCACAGGCAAAGTGATGGTCATGAAGGAGTTAATTCGGTGTGAT GAGGAGACACAGAAGACTTTCCTGACTGAGGTGAAGGTGATGCGCAGCCTGGACCACCCC AACGTGCTCAAGTTCATCGGTGTGCTGTACAAGGACAAGAAGCTGAACCTGCTGACTGAG TACATCGAGGGGGGCACACTGAAGGACTTTCTGCGCAGCGTGGACCCGTTCCCCTGGCAG CAGAAGGTCAGATTTGCCAAAGGCATCGCCTCTGGAATGGCCTATTTACATTCCATGTGC ATCATCCACCGGGACCTGAACTCACACAACTGCCTCATCAAGCTGGACAAGACTGTGGTG GTGGCTGACTTTGGGCTGTCACGGCTCATAGTGGAGGAGCGGAAGAAGCCCTCAGTCGAG AAGGCCGCCACCAAGAAACGTACCTTACGCAAGAGTGACCGCAAGAAGCGCTACACGGTA GTGGGAAACCCCTACTGGATGGCCCCTGAGATGCTGAACGGAAAGAGCTATGATGAGACG GTGGATGTCTTCTCTTTTGGGATCGTGCTCTGTGAGATCATTGGGCAGGTGTATGCAGAT CCTGATTGCCTGCCCCGAACACTGGACTTTGGCCTCAACGTGAAGCTTTTCTGGGAGAAG TTTGTTCCCACAGACTGCCCCCCGGCCTTCTTCCCCCTGGCTGCCATCTGCTGCAAACTG GAGCCCGAGAGCAGACCCGCATTCTCAAAACTGGAGGACTCCTTTGAGGCCCTCTCCCTG TACCTGGGGGAGTTGGGCATCCCGCTGCCAGCCGAGCTGGAGGAACTAGACCATACTGTG AGCCTGCAGTACGGCCTGATCCGGGACTCGCCCCCCTAGCCCTGGCCGAGCCCCCTGCGG GGGGGCGTCCACAGCCACCACTGCCCCCTCTTCGCCCAGCCCTGCCATGGGCGGGGCCAT CCGGGCGTCTCGTGGATTGGCAGCTTGTTTAGAAGCAGAACAAGCCATTCTACTACCTCC CTAGGAGGCGAGCGGGCCCAGCACCAGGGAAACACATCTCCGCATGTTCTGAGGCCTGGT TATCGTCTGTAAATCCAACACTCGCCTGAAAGCTGTGAAGAAGAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 564-701, - strand, RNAz p=0.995642 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 564-701, - strand, RNAz p=0.995642 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 1-187, gnl|bosTau2|chr17 (44149697-44149511) | |
| 1-187, gnl|Hg17|chr22 (29986490-29986676) | |
| 1-187, gnl|Mm7|chr11 (3305462-3305276) | |
| 269-403, gnl|bosTau2|chr17 (44148063-44147929) | |
| 269-403, gnl|canFam2|chr26 (27261843-27261986) | |
| 269-403, gnl|canFam2|chr26 (27261978-27261848) | |
| 269-403, gnl|canFam2|chr6 (9271408-9271251) | |
| 269-403, gnl|danRer3|chr16 (4409507-4409356) | |
| 269-403, gnl|danRer3|chr5 (11694239-11694378) | |
| 269-403, gnl|danRer3|chr5 (11694372-11694246) | |
| 269-403, gnl|dasNov1|scaffold_116885 (557-684) | |
| 269-403, gnl|dasNov1|scaffold_116885 (552-683) | |
| 269-403, gnl|dasNov1|scaffold_116885 (682-560) | |
| 269-403, gnl|echTel1|scaffold_297651 (4023-4179) | |
| 269-403, gnl|echTel1|scaffold_325022 (69026-69166) | |
| 269-403, gnl|echTel1|scaffold_325022 (69161-69035) | |
| 269-403, gnl|fr1|chrUn (1975905-1976044) | |
| 269-403, gnl|fr1|chrUn (84846170-84846311) | |
| 269-403, gnl|fr1|chrUn (1976026-1975912) | |
| 269-403, gnl|galGal2|chr15 (8991343-8991204) | |
| 269-403, gnl|galGal2|chr15 (8991208-8991338) | |
| 269-403, gnl|galGal2|chr19 (602698-602853) | |
| 269-403, gnl|hg17|chr22 (29988314-29988457) | |
| 269-403, gnl|Hg17|chr22 (29988314-29988448) | |
| 269-403, gnl|hg17|chr7 (72967869-72968025) | |
| 269-403, gnl|hg17|chrX (11482391-11482519) | |
| 269-403, gnl|loxAfr1|scaffold_34544 (11644-11489) | |
| 269-403, gnl|loxAfr1|scaffold_5495 (52780-52923) | |
| 269-403, gnl|loxAfr1|scaffold_5495 (52915-52787) | |
| 269-403, gnl|mm7|chr11 (3302780-3302637) | |
| 269-403, gnl|mm7|chr11 (3302645-3302773) | |
| 269-403, gnl|Mm7|chr11 (3302778-3302644) | |
| 269-403, gnl|mm7|chr5 (133635615-133635462) | |
| 269-403, gnl|monDom2|scaffold_141 (149362-149498) | |
| 269-403, gnl|monDom2|scaffold_141 (149497-149368) | |
| 269-403, gnl|monDom2|scaffold_77 (6751130-6751285) | |
| 269-403, gnl|oryCun1|scaffold_100245 (576-420) | |
| 269-403, gnl|oryCun1|scaffold_175907 (37295-37153) | |
| 269-403, gnl|oryCun1|scaffold_175907 (37160-37290) | |
| 269-403, gnl|panTro1|chr23_random (9074906-9074763) | |
| 269-403, gnl|panTro1|chr6 (74708525-74708681) | |
| 269-403, gnl|panTro1|chrX (11808520-11808648) | |
| 269-403, gnl|rheMac2|chr10 (75150720-75150863) | |
| 269-403, gnl|rheMac2|chr10 (75150716-75150860) | |
| 269-403, gnl|rheMac2|chrX (9383694-9383822) | |
| 269-403, gnl|rn3|chr12 (22977350-22977504) | |
| 269-403, gnl|rn3|chr14 (83996246-83996103) | |
| 269-403, gnl|rn3|chr14 (83996111-83996241) | |
| 269-403, gnl|tetNig1|chr12 (6554592-6554735) | |
| 269-403, gnl|tetNig1|chr12 (6554713-6554599) | |
| 269-403, gnl|tetNig1|chrUn_random (105846519-105846663) | |
| 269-403, gnl|xenTro1|scaffold_169 (39349-39485) | |
| 269-403, gnl|xenTro1|scaffold_169 (39484-39354) | |
| 269-403, gnl|xenTro1|scaffold_32 (146025-146165) | |
| 525-701, gnl|bosTau2|chr17 (44145303-44145127) | |
| 525-701, gnl|Hg17|chr22 (29993069-29993245) | |
| 525-701, gnl|Mm7|chr11 (3299752-3299576) | |
| 913-1308, gnl|bosTau2|chr17 (43568526-43568918) | |
| 913-1308, gnl|Hg17|chr22 (29998835-29999232) | |
| 913-1308, gnl|Mm7|chr11 (3297889-3297495) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-187, gnl|bosTau2|chr17 (44149697-44149511) | |
| 1-187, gnl|Hg17|chr22 (29986490-29986676) | |
| 1-187, gnl|Mm7|chr11 (3305462-3305276) | |
| 269-403, gnl|bosTau2|chr17 (44148063-44147929) | |
| 269-403, gnl|canFam2|chr26 (27261843-27261986) | |
| 269-403, gnl|canFam2|chr26 (27261978-27261848) | |
| 269-403, gnl|canFam2|chr6 (9271408-9271251) | |
| 269-403, gnl|danRer3|chr16 (4409507-4409356) | |
| 269-403, gnl|danRer3|chr5 (11694239-11694378) | |
| 269-403, gnl|danRer3|chr5 (11694372-11694246) | |
| 269-403, gnl|dasNov1|scaffold_116885 (557-684) | |
| 269-403, gnl|dasNov1|scaffold_116885 (552-683) | |
| 269-403, gnl|dasNov1|scaffold_116885 (682-560) | |
| 269-403, gnl|echTel1|scaffold_297651 (4023-4179) | |
| 269-403, gnl|echTel1|scaffold_325022 (69026-69166) | |
| 269-403, gnl|echTel1|scaffold_325022 (69161-69035) | |
| 269-403, gnl|fr1|chrUn (1975905-1976044) | |
| 269-403, gnl|fr1|chrUn (84846170-84846311) | |
| 269-403, gnl|fr1|chrUn (1976026-1975912) | |
| 269-403, gnl|galGal2|chr15 (8991343-8991204) | |
| 269-403, gnl|galGal2|chr15 (8991208-8991338) | |
| 269-403, gnl|galGal2|chr19 (602698-602853) | |
| 269-403, gnl|hg17|chr22 (29988314-29988457) | |
| 269-403, gnl|Hg17|chr22 (29988314-29988448) | |
| 269-403, gnl|hg17|chr7 (72967869-72968025) | |
| 269-403, gnl|hg17|chrX (11482391-11482519) | |
| 269-403, gnl|loxAfr1|scaffold_34544 (11644-11489) | |
| 269-403, gnl|loxAfr1|scaffold_5495 (52780-52923) | |
| 269-403, gnl|loxAfr1|scaffold_5495 (52915-52787) | |
| 269-403, gnl|mm7|chr11 (3302780-3302637) | |
| 269-403, gnl|mm7|chr11 (3302645-3302773) | |
| 269-403, gnl|Mm7|chr11 (3302778-3302644) | |
| 269-403, gnl|mm7|chr5 (133635615-133635462) | |
| 269-403, gnl|monDom2|scaffold_141 (149362-149498) | |
| 269-403, gnl|monDom2|scaffold_141 (149497-149368) | |
| 269-403, gnl|monDom2|scaffold_77 (6751130-6751285) | |
| 269-403, gnl|oryCun1|scaffold_100245 (576-420) | |
| 269-403, gnl|oryCun1|scaffold_175907 (37295-37153) | |
| 269-403, gnl|oryCun1|scaffold_175907 (37160-37290) | |
| 269-403, gnl|panTro1|chr23_random (9074906-9074763) | |
| 269-403, gnl|panTro1|chr6 (74708525-74708681) | |
| 269-403, gnl|panTro1|chrX (11808520-11808648) | |
| 269-403, gnl|rheMac2|chr10 (75150720-75150863) | |
| 269-403, gnl|rheMac2|chr10 (75150716-75150860) | |
| 269-403, gnl|rheMac2|chrX (9383694-9383822) | |
| 269-403, gnl|rn3|chr12 (22977350-22977504) | |
| 269-403, gnl|rn3|chr14 (83996246-83996103) | |
| 269-403, gnl|rn3|chr14 (83996111-83996241) | |
| 269-403, gnl|tetNig1|chr12 (6554592-6554735) | |
| 269-403, gnl|tetNig1|chr12 (6554713-6554599) | |
| 269-403, gnl|tetNig1|chrUn_random (105846519-105846663) | |
| 269-403, gnl|xenTro1|scaffold_169 (39349-39485) | |
| 269-403, gnl|xenTro1|scaffold_169 (39484-39354) | |
| 269-403, gnl|xenTro1|scaffold_32 (146025-146165) | |
| 525-701, gnl|bosTau2|chr17 (44145303-44145127) | |
| 525-701, gnl|Hg17|chr22 (29993069-29993245) | |
| 525-701, gnl|Mm7|chr11 (3299752-3299576) | |
| 913-1308, gnl|bosTau2|chr17 (43568526-43568918) | |
| 913-1308, gnl|Hg17|chr22 (29998835-29999232) | |
| 913-1308, gnl|Mm7|chr11 (3297889-3297495) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| ebs (0.118301) |