Non-Coding RNA Search

Ss1.1-Pig4-TMW8033B22.3

Sequence:


               
               GACGGGCAGAAGACCCAGCCTGAAGAGACGCAGGAAGAGGAAAAAACAGAGGTAAACGGG
GCCACCGCTGCCGCCGCCTCTGCCCCGGTGGCGCGGAAGAGAGACCCGGGTGGCTGCCCG
GCTTCGCGATCCCAGCCCCGCTTCTTACTCTGTAAGGCGCCGGAGCCTGCTCAACTGCCC
TATCGGTCCCGAGGAGGAAGAGAACCAGCTCACTTGGTCAGCGCCCCGGCTCATCTCTAA
AGTAATGTGAAAACCTTTGCGTCTTCTGATAGTCTAGGCGACGTACGTACTCCCTGCCCT
TCCCCCTGCCAAAAAAAAAAGAAAAAAGAAAAAAAAAAAAAAGCAAAAAGAAAAGGAAAA
GAAAAAAAATCCCTTGTTCTCAGTGGTGCAGGATGTTGGCTCGGGGCAACAGAGAGAAAA
GACCTACAGACAGACTCGGAAAGAAAAGAGGAAGAGACGAGAAACCACAACTGACAAGAG
AAGCTGTCATCTCGTCACGCAGAAGGCTTCACTTTGGACTGAGGGCAGCTTTGCAAAATG
AGACGTTCTCAATCCACCCCGGTGCAATTATTTCTTTATTTTCTTCTCCAGTGGTCTTTG
GGCAGCGTTCACGCCGAGACGTCCTTACAGATTCTGCTAGCCTGTTCTTCTACCACTGAG
ACCTGGAAAGAAGCTGCAATACCATCCACACAGTACCGGCGGACTTTCTGACTAGAGAGC
ATCTGCAACAAAAAGTCATTTTTCTGGAGTGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGGGCAGAAGACCCAGCCTGAAGAGACGCAGGAAGAGGAAAAAACAGAGGTAAACGGG
GCCACCGCTGCCGCCGCCTCTGCCCCGGTGGCGCGGAAGAGAGACCCGGGTGGCTGCCCG
GCTTCGCGATCCCAGCCCCGCTTCTTACTCTGTAAGGCGCCGGAGCCTGCTCAACTGCCC
TATCGGTCCCGAGGAGGAAGAGAACCAGCTCACTTGGTCAGCGCCCCGGCTCATCTCTAA
AGTAATGTGAAAACCTTTGCGTCTTCTGATAGTCTAGGCGACGTACGTACTCCCTGCCCT
TCCCCCTGCCAAAAAAAAAAGAAAAAAGAAAAAAAAAAAAAAGCAAAAAGAAAAGGAAAA
GAAAAAAAATCCCTTGTTCTCAGTGGTGCAGGATGTTGGCTCGGGGCAACAGAGAGAAAA
GACCTACAGACAGACTCGGAAAGAAAAGAGGAAGAGACGAGAAACCACAACTGACAAGAG
AAGCTGTCATCTCGTCACGCAGAAGGCTTCACTTTGGACTGAGGGCAGCTTTGCAAAATG
AGACGTTCTCAATCCACCCCGGTGCAATTATTTCTTTATTTTCTTCTCCAGTGGTCTTTG
GGCAGCGTTCACGCCGAGACGTCCTTACAGATTCTGCTAGCCTGTTCTTCTACCACTGAG
ACCTGGAAAGAAGCTGCAATACCATCCACACAGTACCGGCGGACTTTCTGACTAGAGAGC
ATCTGCAACAAAAAGTCATTTTTCTGGAGTGGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               569-680, - strand, RNAz p=0.728264

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               569-680, - strand, RNAz p=0.728264

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-243, gnl|bosTau2|chr17 (622732-622969)
               

               
               1-243, gnl|Hg17|chr4 (153813933-153813698)
               

               
               1-243, gnl|Mm7|chr3 (84928376-84928620)
               


               
               334-756, gnl|bosTau2|chr17 (844999-845423)
               

               
               334-756, gnl|Hg17|chr4 (153601575-153601149)
               

               
               334-756, gnl|Mm7|chr3 (85090501-85090879)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-243, gnl|bosTau2|chr17 (622732-622969)
               

               
               1-243, gnl|Hg17|chr4 (153813933-153813698)
               

               
               1-243, gnl|Mm7|chr3 (84928376-84928620)
               


               
               334-756, gnl|bosTau2|chr17 (844999-845423)
               

               
               334-756, gnl|Hg17|chr4 (153601575-153601149)
               

               
               334-756, gnl|Mm7|chr3 (85090501-85090879)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pgl (0.236967)
               

               
               che (0.136314)
               

               
               sug (0.127291)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               che (0.136314)
               

               
               sug (0.127291)

	1-243, gnl\|bosTau2\|chr17 (622732-622969)
	1-243, gnl\|Hg17\|chr4 (153813933-153813698)
	1-243, gnl\|Mm7\|chr3 (84928376-84928620)

	334-756, gnl\|bosTau2\|chr17 (844999-845423)
	334-756, gnl\|Hg17\|chr4 (153601575-153601149)
	334-756, gnl\|Mm7\|chr3 (85090501-85090879)